Guide to the Human Genome
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Name: CCDC82 Sequence: fasta or formatted (544aa) NCBI GI: 19923844
Description:

coiled-coil domain containing 82

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          9           2
 C cysteine            2.0         11           2
 D aspartate           9.4         51           2
 E glutamate          13.4         73           5
 F phenylalanine       2.9         16           1
 G glycine             3.9         21           1
 H histidine           2.8         15           1
 I isoleucine          4.0         22           2
 K lysine              8.6         47           1
 L leucine             7.9         43           2
 M methionine          1.3          7           1
 N asparagine          5.1         28           1
 P proline             1.5          8           1
 Q glutamine           5.9         32           2
 R arginine            7.0         38           2
 S serine              9.9         54           2
 T threonine           4.0         22           2
 V valine              4.8         26           2
 W tryptophan          0.6          3           1
 Y tyrosine            3.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 82 
HTATSF1               0.039   HIV-1 Tat specific factor 1 
HTATSF1               0.039   HIV-1 Tat specific factor 1 
IWS1                  0.034   IWS1 homolog 
LEO1                  0.034   Leo1, Paf1/RNA polymerase II complex component, homo...
MDN1                  0.032   MDN1, midasin homolog 
LOC283767             0.031   golgi autoantigen, golgin subfamily a-like 
DSPP                  0.031   dentin sialophosphoprotein preproprotein 
EIF5B                 0.031   eukaryotic translation initiation factor 5B 
ARID4A                0.030   retinoblastoma-binding protein 1 isoform III 
ARID4A                0.030   retinoblastoma-binding protein 1 isoform II 
ARID4A                0.030   retinoblastoma-binding protein 1 isoform I 
LOC100133758          0.030   PREDICTED: hypothetical protein, partial 
LOC440243             0.030   PREDICTED: Putative golgin subfamily A member 6-lik...
TCHH                  0.029   trichohyalin 
SUPT6H                0.029   suppressor of Ty 6 homolog 
WDR87                 0.028   NYD-SP11 protein 
CALD1                 0.028   caldesmon 1 isoform 2 
CALD1                 0.028   caldesmon 1 isoform 5 
RBM25                 0.026   RNA binding motif protein 25 
ATRX                  0.026   transcriptional regulator ATRX isoform 2 
ATRX                  0.026   transcriptional regulator ATRX isoform 1 
LOC283685             0.026   PREDICTED: golgi autoantigen, golgin subfamily a-li...
NSBP1                 0.025   nucleosomal binding protein 1 
CCAR1                 0.025   cell-cycle and apoptosis regulatory protein 1 
UBTF                  0.025   upstream binding transcription factor, RNA polymera...
UBTF                  0.025   upstream binding transcription factor, RNA polymera...
UBTF                  0.025   upstream binding transcription factor, RNA polymerase...
CHD1                  0.025   chromodomain helicase DNA binding protein 1 
RPGR                  0.025   retinitis pigmentosa GTPase regulator isoform C [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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