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Search of human proteins with 19923387
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923387 nuclear cap binding protein subunit 2, 20kDa
isoform 1 [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform... 322 6e-89
gi|110349727 nuclear cap binding protein subunit 2, 20kDa isofor... 183 4e-47
gi|239757879 PREDICTED: similar to Nuclear cap-binding protein s... 125 2e-29
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 64 4e-11
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 63 1e-10
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 62 3e-10
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 57 5e-09
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 57 5e-09
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 57 5e-09
gi|14702180 eukaryotic translation initiation factor 4H isoform ... 57 5e-09
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 56 1e-08
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 56 1e-08
gi|49472822 eukaryotic translation initiation factor 3, subunit ... 55 2e-08
gi|9558733 transformer-2 alpha [Homo sapiens] 54 7e-08
gi|11559923 eukaryotic translation initiation factor 4H isoform ... 53 1e-07
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 53 1e-07
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 53 1e-07
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 52 3e-07
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 52 3e-07
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 51 3e-07
gi|4826972 RNA binding motif protein 8A [Homo sapiens] 51 5e-07
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 51 5e-07
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 51 5e-07
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 50 6e-07
gi|34303937 RNA binding motif protein, Y-linked, family 1, membe... 50 6e-07
gi|56090529 RNA binding motif protein, Y-linked, family 1, membe... 50 6e-07
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 50 8e-07
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 49 1e-06
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 49 1e-06
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 49 2e-06
>gi|19923387 nuclear cap binding protein subunit 2, 20kDa isoform 1
[Homo sapiens]
Length = 156
Score = 322 bits (826), Expect = 6e-89
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF 60
MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF
Sbjct: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF 60
Query: 61 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120
SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK
Sbjct: 61 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120
Query: 121 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 156
EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
Sbjct: 121 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 156
>gi|110349727 nuclear cap binding protein subunit 2, 20kDa isoform 2
[Homo sapiens]
Length = 103
Score = 183 bits (465), Expect = 4e-47
Identities = 100/156 (64%), Positives = 102/156 (65%), Gaps = 53/156 (33%)
Query: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELF 60
MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLK
Sbjct: 1 MSGGLLKALRSDSYVELSQYRDQHFRGDNEEQEKLLK----------------------- 37
Query: 61 SKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120
++ AENAMRYINGTRLDDRIIRTDWDAGFK
Sbjct: 38 ------------------------------KSYAENAMRYINGTRLDDRIIRTDWDAGFK 67
Query: 121 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 156
EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ
Sbjct: 68 EGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQNQ 103
>gi|239757879 PREDICTED: similar to Nuclear cap-binding protein
subunit 2-like [Homo sapiens]
Length = 114
Score = 125 bits (313), Expect = 2e-29
Identities = 69/149 (46%), Positives = 86/149 (57%), Gaps = 40/149 (26%)
Query: 6 LKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGD 65
LK L D +ELS YRD F G +QEKLLK+S TL +GNLSFYTTEE+I+EL
Sbjct: 5 LKILCKDPALELSCYRDHQFSGRKFQQEKLLKESSTLNMGNLSFYTTEEKIHELL----- 59
Query: 66 IKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQY 125
+ GT LD+ II TDWD GF+EG+QY
Sbjct: 60 -----------------------------------LTGTCLDEWIICTDWDVGFREGQQY 84
Query: 126 GRGRSGGQVRDEYRQDYDAGRGGYGKLAQ 154
GRG+SGGQVRDE+R+D+ +GRGG+G+ Q
Sbjct: 85 GRGKSGGQVRDEFREDFHSGRGGFGRQTQ 113
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 64.3 bits (155), Expect = 4e-11
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 22/130 (16%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L+VG LSF T E+ + ++FSK G I ++++ D+ + + GF FV + + DA++AM +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 102 NGTRLDDRIIRTDWDAG--------------------FKEGRQYGRGRS-GGQVRDEYRQ 140
NG +D R IR D AG F+ GR GRG S GG R
Sbjct: 68 NGKSVDGRQIRVD-QAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGN 126
Query: 141 DYDAGRGGYG 150
+++ GGYG
Sbjct: 127 RFESRSGGYG 136
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 62.8 bits (151), Expect = 1e-10
Identities = 46/132 (34%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
+C L V LS YTTE + E+FSK G I + + D+ + + GF FV + + DA+ A
Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176
Query: 99 RYINGTRLDDRIIRTDWD---------AGFKEGR-QYGRGR----------SGGQVRDEY 138
NG LD R IR D+ G GR YG R G RD Y
Sbjct: 177 ERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYY 236
Query: 139 RQDYDAGRGGYG 150
+ Y G GG G
Sbjct: 237 SRSYRGGGGGGG 248
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 61.6 bits (148), Expect = 3e-10
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 10/119 (8%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L+VG L+F T E+ + + FS G I ++++ D+ + + GF F+ + + A AMR +
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 102 NGTRLDDRIIRTDWDAGFKEGRQ------YGRGRS----GGQVRDEYRQDYDAGRGGYG 150
NG LD R IR D G + +GRGRS GG + YD+ GGYG
Sbjct: 68 NGESLDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGGGDQGYGSGRYYDSRPGGYG 126
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.4 bits (137), Expect = 5e-09
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK---TACGFC 84
+ EE+E+ CTL++ NL+F TTEE++ E+FSK G +K + K K + GF
Sbjct: 718 EEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFG 777
Query: 85 FVEYYSRADAENAMRYINGTRLD 107
FVEY A+ A++ + G +D
Sbjct: 778 FVEYRKPEQAQKALKQLQGHVVD 800
Score = 50.4 bits (119), Expect = 6e-07
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 27 GDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
G+NEE+E L + S L+V NL + +TEE + +LFSK G + ++ +D + K GF F+
Sbjct: 390 GENEEEEDLAE-SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448
Query: 87 EYYSRADAENAMRYINGTRLDDRII 111
+ A A ++G R++
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRML 473
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.4 bits (137), Expect = 5e-09
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK---TACGFC 84
+ EE+E+ CTL++ NL+F TTEE++ E+FSK G +K + K K + GF
Sbjct: 718 EEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFG 777
Query: 85 FVEYYSRADAENAMRYINGTRLD 107
FVEY A+ A++ + G +D
Sbjct: 778 FVEYRKPEQAQKALKQLQGHVVD 800
Score = 50.4 bits (119), Expect = 6e-07
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 27 GDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
G+NEE+E L + S L+V NL + +TEE + +LFSK G + ++ +D + K GF F+
Sbjct: 390 GENEEEEDLAE-SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448
Query: 87 EYYSRADAENAMRYINGTRLDDRII 111
+ A A ++G R++
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRML 473
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 57.4 bits (137), Expect = 5e-09
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK---TACGFC 84
+ EE+E+ CTL++ NL+F TTEE++ E+FSK G +K + K K + GF
Sbjct: 718 EEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFG 777
Query: 85 FVEYYSRADAENAMRYINGTRLD 107
FVEY A+ A++ + G +D
Sbjct: 778 FVEYRKPEQAQKALKQLQGHVVD 800
Score = 50.4 bits (119), Expect = 6e-07
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 27 GDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
G+NEE+E L + S L+V NL + +TEE + +LFSK G + ++ +D + K GF F+
Sbjct: 390 GENEEEEDLAE-SGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448
Query: 87 EYYSRADAENAMRYINGTRLDDRII 111
+ A A ++G R++
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRML 473
>gi|14702180 eukaryotic translation initiation factor 4H isoform 2
[Homo sapiens]
Length = 228
Score = 57.4 bits (137), Expect = 5e-09
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 27 GDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
G ++E + T YVGNL F T + I +F K I+ + + DK GFC+V
Sbjct: 29 GSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYV 87
Query: 87 EYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGR 146
E+ + A+ Y +G L DR +R D G K+ + R GG +R D+ GR
Sbjct: 88 EFDEVDSLKEALTY-DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGFRDDFLGGR 146
Query: 147 GG 148
GG
Sbjct: 147 GG 148
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 55.8 bits (133), Expect = 1e-08
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L++G L+ T E+ + +F K G I ++++ D+ + GF FV + S ADA++A R +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 102 NGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYR---QDYDAGRGGYG 150
NG LD + I+ + + RGR G R + + AGRGG G
Sbjct: 70 NGKSLDGKAIKVEQ----ATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSG 117
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 55.8 bits (133), Expect = 1e-08
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L++G L+ T E+ + +F K G I ++++ D+ + GF FV + S ADA++A R +
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 102 NGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYR---QDYDAGRGGYG 150
NG LD + I+ + + RGR G R + + AGRGG G
Sbjct: 70 NGKSLDGKAIKVEQ----ATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSG 117
>gi|49472822 eukaryotic translation initiation factor 3, subunit 4
delta, 44kDa [Homo sapiens]
Length = 320
Score = 55.5 bits (132), Expect = 2e-08
Identities = 31/106 (29%), Positives = 51/106 (48%)
Query: 10 RSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKI 69
++ YV S RG++ + + + T+ V NLS T E + ELF G I +I
Sbjct: 209 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268
Query: 70 IMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115
+ DK + GF F+ ++ R DA A+ ++G D I+ +W
Sbjct: 269 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 314
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 53.5 bits (127), Expect = 7e-08
Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L V LS YTTE + E+FS+ G + + + D+ + GF FV + D++ AM
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 102 NGTRLDDRIIRTDW--------------------DAGFKEGRQYGRGRSGGQVRDE-YRQ 140
NG LD R IR D+ G G G G GG+ RD Y +
Sbjct: 181 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDR 240
Query: 141 DYDAGRGGY 149
YD G Y
Sbjct: 241 GYDRGYDRY 249
>gi|11559923 eukaryotic translation initiation factor 4H isoform 1
[Homo sapiens]
Length = 248
Score = 52.8 bits (125), Expect = 1e-07
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 27 GDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFV 86
G ++E + T YVGNL F T + I +F K I+ + + DK GFC+V
Sbjct: 29 GSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIF-KDLSIRSVRLVRDKDTDKFKGFCYV 87
Query: 87 EYYSRADAENAMRYINGTRLDDRIIRTD---------WDAGFKEGRQYGRG-------RS 130
E+ + A+ Y +G L DR +R D GF++G RG R
Sbjct: 88 EFDEVDSLKEALTY-DGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGMGSSRESRG 146
Query: 131 GGQVRDE----YRQDYDAGRGG 148
G RD+ +R D+ GRGG
Sbjct: 147 GWDSRDDFNSGFRDDFLGGRGG 168
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 52.8 bits (125), Expect = 1e-07
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L++G L+ T E+ + +F K G I ++++ D+ + GF FV + S ADA++A R +
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 102 NGTRLDDRIIRTD--WDAGFKEGRQYGRG-----RSGGQVRDEYRQDYDAGRGGYG 150
NG LD + I+ + F+ GR RG RS G R GRGG G
Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGR---RGPPPPPRSRGPPR-----GLRGGRGGSG 117
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 52.8 bits (125), Expect = 1e-07
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADA 94
L T+YV NL F T +Y +FSK G + K+ + DK + + G F+ + + A
Sbjct: 5 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
Query: 95 ENAMRYINGTRLDDRIIR 112
+N R IN +L R+I+
Sbjct: 65 QNCTRAINNKQLFGRVIK 82
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 51.6 bits (122), Expect = 3e-07
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
+LYVG+L TE +YE FS +G I I + DK+ + + G+ +V Y DA+ A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 INGTRLDDRIIRTDWDAGFKEGRQYGRG 128
+N + R +R W R+ G G
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG 90
Score = 32.3 bits (72), Expect = 0.17
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 31 EQEKLLKKSCT--LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY 88
+++ L+KS +++ NL + +Y +FS G+I + D +K G+ FV +
Sbjct: 79 QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHF 136
Query: 89 YSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYD 143
+ AE A+ +NG L+ R I KE R+ RG Q +D++
Sbjct: 137 QKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE-REAERGAWARQSTSADVKDFE 190
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 51.6 bits (122), Expect = 3e-07
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
+LYVG+L TE +YE FS +G I I + DK+ + + G+ +V Y DA+ A+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 101 INGTRLDDRIIRTDWDAGFKEGRQYGRG 128
+N + R +R W R+ G G
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVG 90
Score = 32.3 bits (72), Expect = 0.17
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 31 EQEKLLKKSCT--LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY 88
+++ L+KS +++ NL + +Y +FS G+I + D +K G+ FV +
Sbjct: 79 QRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACD--EKGPKGYGFVHF 136
Query: 89 YSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYD 143
+ AE A+ +NG L+ R I KE R+ RG Q +D++
Sbjct: 137 QKQESAERAIDVMNGMFLNYRKIFVGRFKSHKE-REAERGAWARQSTSADVKDFE 190
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 51.2 bits (121), Expect = 3e-07
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
TLYVGNLS TE I +LFS+ G K M + +CFVE+Y DA A+
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 101 INGTRLDDRIIRTDW 115
+NG ++ + ++ +W
Sbjct: 68 MNGRKILGKEVKVNW 82
Score = 48.9 bits (115), Expect = 2e-06
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 32 QEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91
Q+K ++VG+LS T E I F+ G I + D + G+ FV +Y++
Sbjct: 89 QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 148
Query: 92 ADAENAMRYINGTRLDDRIIRTDW 115
DAENA+ ++ G L R IRT+W
Sbjct: 149 LDAENAIVHMGGQWLGGRQIRTNW 172
Score = 43.1 bits (100), Expect = 9e-05
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 97
K+CT+Y G ++ T++ + + FS G I +I + +K G+ FV + + A +A
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHA 256
Query: 98 MRYINGTRLDDRIIRTDW 115
+ +NGT ++ +++ W
Sbjct: 257 IVSVNGTTIEGHVVKCYW 274
>gi|4826972 RNA binding motif protein 8A [Homo sapiens]
Length = 174
Score = 50.8 bits (120), Expect = 5e-07
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L+V + TEE I++ F++ G+IK I + LD+ G+ VEY + +A+ AM +
Sbjct: 75 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134
Query: 102 NGTRLDDRIIRTDWDAGFKEGRQYGRGRSG 131
NG L + I DW F G G+ R G
Sbjct: 135 NGQDLMGQPISVDW--CFVRGPPKGKRRGG 162
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 50.8 bits (120), Expect = 5e-07
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
+L V NL++ T+ + + +F K G + + + D+ K + GF FV ++ + DAE+AM
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 101 INGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAGRGGYGKLAQN 155
++G LD R +R + +YGR R G GGYG+ +++
Sbjct: 75 MDGAVLDGRELRV-------QMARYGRPPDSHHSR-RGPPPRRYGGGGYGRRSRS 121
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 50.8 bits (120), Expect = 5e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
+++VGN+ + TEEQ+ ++FS+ G + + D+ G+ F EY + A +AMR
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 101 INGTRLDDRIIRTD 114
+NG R +R D
Sbjct: 77 LNGREFSGRALRVD 90
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 50.4 bits (119), Expect = 6e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
+++VGN+ + TEEQ+ ++FS+ G + + D+ G+ F EY + A +AMR
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 101 INGTRLDDRIIRTD 114
+NG R +R D
Sbjct: 77 LNGREFSGRALRVD 90
>gi|34303937 RNA binding motif protein, Y-linked, family 1, member F
[Homo sapiens]
Length = 496
Score = 50.4 bits (119), Expect = 6e-07
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L++G L+ T E+ + +F K G I ++++ D+ K+ GF F+ + + ADA+NA + +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 102 NGTRLDDRIIRTD 114
NGT L + I+ +
Sbjct: 69 NGTSLHGKAIKVE 81
>gi|56090529 RNA binding motif protein, Y-linked, family 1, member J
[Homo sapiens]
Length = 496
Score = 50.4 bits (119), Expect = 6e-07
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
L++G L+ T E+ + +F K G I ++++ D+ K+ GF F+ + + ADA+NA + +
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR-GFAFITFENPADAKNAAKDM 68
Query: 102 NGTRLDDRIIRTD 114
NGT L + I+ +
Sbjct: 69 NGTSLHGKAIKVE 81
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 50.1 bits (118), Expect = 8e-07
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
TL V NL++ T+ + + +F K G + + + + K GF FV ++ R DA++A
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 101 INGTRLDDRIIRTDWD-------AGFKEGRQYGRGRSGGQVR 135
++G LD R +R ++G GR R GG R
Sbjct: 75 MDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGR 116
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 49.3 bits (116), Expect = 1e-06
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
TLYVGNLS TE I +LFS+ G K M +D +CFVE++ A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65
Query: 101 INGTRLDDRIIRTDW 115
+NG ++ + ++ +W
Sbjct: 66 MNGRKIMGKEVKVNW 80
Score = 46.2 bits (108), Expect = 1e-05
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 32 QEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91
Q+K ++VG+LS T E I F+ G I + D + G+ FV ++++
Sbjct: 87 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 146
Query: 92 ADAENAMRYINGTRLDDRIIRTDW 115
DAENA++ + G L R IRT+W
Sbjct: 147 WDAENAIQQMGGQWLGGRQIRTNW 170
Score = 44.7 bits (104), Expect = 3e-05
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
+CT+Y G ++ TE+ + + FS G I +I + DK G+ FV + S A +A+
Sbjct: 202 NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAI 255
Query: 99 RYINGTRLDDRIIRTDW 115
+NGT ++ +++ W
Sbjct: 256 VSVNGTTIEGHVVKCYW 272
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 49.3 bits (116), Expect = 1e-06
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100
TLYVGNLS TE I +LFS+ G K M +D +CFVE++ A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALAA 65
Query: 101 INGTRLDDRIIRTDW 115
+NG ++ + ++ +W
Sbjct: 66 MNGRKIMGKEVKVNW 80
Score = 45.8 bits (107), Expect = 1e-05
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 42 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101
++VG+LS T E I F+ G I + D + G+ FV ++++ DAENA++ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 102 NGTRLDDRIIRTDW 115
G L R IRT+W
Sbjct: 168 GGQWLGGRQIRTNW 181
Score = 44.7 bits (104), Expect = 3e-05
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 98
+CT+Y G ++ TE+ + + FS G I +I + DK G+ FV + S A +A+
Sbjct: 213 NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAI 266
Query: 99 RYINGTRLDDRIIRTDW 115
+NGT ++ +++ W
Sbjct: 267 VSVNGTTIEGHVVKCYW 283
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 48.9 bits (115), Expect = 2e-06
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 32 QEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 91
Q+K ++VG+LS T E I F+ G I + D + G+ FV +Y++
Sbjct: 106 QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 165
Query: 92 ADAENAMRYINGTRLDDRIIRTDW 115
DAENA+ ++ G L R IRT+W
Sbjct: 166 LDAENAIVHMGGQWLGGRQIRTNW 189
Score = 47.8 bits (112), Expect = 4e-06
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 15/90 (16%)
Query: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIM--------------GLDKMKKTACG-FCF 85
TLYVGNLS TE I +LFS+ G K M G ++ T+ +CF
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
Query: 86 VEYYSRADAENAMRYINGTRLDDRIIRTDW 115
VE+Y DA A+ +NG ++ + ++ +W
Sbjct: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNW 99
Score = 43.1 bits (100), Expect = 9e-05
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 97
K+CT+Y G ++ T++ + + FS G I +I + +K G+ FV + + A +A
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHA 273
Query: 98 MRYINGTRLDDRIIRTDW 115
+ +NGT ++ +++ W
Sbjct: 274 IVSVNGTTIEGHVVKCYW 291
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,637,580
Number of Sequences: 37866
Number of extensions: 229936
Number of successful extensions: 1144
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 414
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.