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Search of human proteins with 19923345
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923345 RNA binding motif protein 12 [Homo sapiens]
(932 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 1919 0.0
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 1919 0.0
gi|118722349 RNA binding motif protein 12B [Homo sapiens] 199 1e-50
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 101 4e-21
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 101 4e-21
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 101 4e-21
gi|126352608 elastin isoform e precursor [Homo sapiens] 95 3e-19
gi|126352322 elastin isoform c precursor [Homo sapiens] 95 3e-19
gi|126352700 elastin isoform b precursor [Homo sapiens] 95 3e-19
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 95 3e-19
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 94 8e-19
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 94 8e-19
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 92 2e-18
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 92 2e-18
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 91 4e-18
gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo sap... 90 9e-18
gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo sap... 90 9e-18
gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo sap... 90 9e-18
gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo sap... 90 9e-18
gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo sap... 90 9e-18
gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens] 90 9e-18
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 89 2e-17
gi|126352446 elastin isoform d precursor [Homo sapiens] 89 2e-17
gi|126352440 elastin isoform a precursor [Homo sapiens] 89 2e-17
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 89 2e-17
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 87 6e-17
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 87 9e-17
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 85 4e-16
gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo sap... 82 2e-15
gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo sapi... 82 2e-15
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 1919 bits (4972), Expect = 0.0
Identities = 932/932 (100%), Positives = 932/932 (100%)
Query: 1 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT 60
MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT
Sbjct: 1 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT 60
Query: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP 120
GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP 120
Query: 121 TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS 180
TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS
Sbjct: 121 TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS 180
Query: 181 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP 240
PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP
Sbjct: 181 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP 240
Query: 241 MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN 300
MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN
Sbjct: 241 MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN 300
Query: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 361 KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS 420
KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS
Sbjct: 361 KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS 420
Query: 421 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 480
RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN
Sbjct: 421 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 480
Query: 481 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN 540
EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN
Sbjct: 481 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN 540
Query: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 600
SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK
Sbjct: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 600
Query: 601 SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV 660
SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV
Sbjct: 601 SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV 660
Query: 661 GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP 720
GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP
Sbjct: 661 GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP 720
Query: 721 FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS 780
FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS
Sbjct: 721 FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS 780
Query: 781 GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI 840
GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI
Sbjct: 781 GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI 840
Query: 841 GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA 900
GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA
Sbjct: 841 GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA 900
Query: 901 MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 932
MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG
Sbjct: 901 MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 932
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 1919 bits (4972), Expect = 0.0
Identities = 932/932 (100%), Positives = 932/932 (100%)
Query: 1 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT 60
MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT
Sbjct: 1 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT 60
Query: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP 120
GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP
Sbjct: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRRRFETANLDIPPANASRSGPPPSSGMSSRVNLP 120
Query: 121 TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS 180
TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS
Sbjct: 121 TTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTAS 180
Query: 181 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP 240
PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP
Sbjct: 181 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPP 240
Query: 241 MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN 300
MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN
Sbjct: 241 MSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPIN 300
Query: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL
Sbjct: 301 PDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL 360
Query: 361 KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS 420
KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS
Sbjct: 361 KRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKRS 420
Query: 421 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 480
RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN
Sbjct: 421 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 480
Query: 481 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN 540
EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN
Sbjct: 481 EADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVN 540
Query: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 600
SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK
Sbjct: 541 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 600
Query: 601 SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV 660
SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV
Sbjct: 601 SERLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV 660
Query: 661 GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP 720
GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP
Sbjct: 661 GLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPP 720
Query: 721 FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS 780
FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS
Sbjct: 721 FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS 780
Query: 781 GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI 840
GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI
Sbjct: 781 GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI 840
Query: 841 GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA 900
GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA
Sbjct: 841 GGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEA 900
Query: 901 MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 932
MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG
Sbjct: 901 MVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 932
>gi|118722349 RNA binding motif protein 12B [Homo sapiens]
Length = 1001
Score = 199 bits (505), Expect = 1e-50
Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 19/348 (5%)
Query: 295 KPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQ 354
K P+ ++ Y+ + G+P+ E+DVR FF GL VD V LK H GRNNG+ +VKF S
Sbjct: 146 KTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCVDGVIFLKHHDGRNNGDAIVKFASCV 205
Query: 355 DTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTL------ 408
D LK +R M R++EV +E+QW+ GG+ + ++ + H PP+ +
Sbjct: 206 DASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVKEGDVLRRSEEHSPPRGINDRHFR 265
Query: 409 --PRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGP 466
SKSP +R+RSRSP GF V+LK L + + + +FF+ D+ ++ I Y
Sbjct: 266 KRSHSKSP---RRTRSRSP--LGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKD 320
Query: 467 NGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMI-RKRLQNFS 525
+ T FV F+ DY AL HK + R + + PI++K ML+ I +KR +
Sbjct: 321 ENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIARYEKKRSGSLE 379
Query: 526 YDQREMI---LNPEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNG 582
D+ + + EG+ + K+C +I N PF +TK++V +F + E+ +++L D+ G
Sbjct: 380 RDRPGHVSQKYSQEGN-SGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKG 438
Query: 583 QGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIEKN 630
GLG+ALV+FK+E+ A K+ERL+R++ G E + +++ ++E N
Sbjct: 439 VGLGEALVKFKSEEQAMKAERLNRRRFLGTEVLLRLISEAQIQEFGVN 486
Score = 129 bits (325), Expect = 1e-29
Identities = 63/87 (72%), Positives = 72/87 (82%)
Query: 1 MAVVIRLQGLPIVAGTMDIRHFFSGLTIPDGGVHIVGGELGEAFIVFATDEDARLGMMRT 60
MAVVIRL GLP +AG +DIRHFF+GLTIPDGGVHI+GGE+GEAFI+FATDEDAR + R+
Sbjct: 1 MAVVIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHIIGGEIGEAFIIFATDEDARRAISRS 60
Query: 61 GGTIKGSKVTLLLSSKTEMQNMIELSR 87
GG IK S V L LSSK EMQ IE+ R
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKR 87
Score = 103 bits (256), Expect = 1e-21
Identities = 49/88 (55%), Positives = 67/88 (76%), Gaps = 2/88 (2%)
Query: 844 PGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVA 903
P SG+ P IK+ N+PF +++EILDFF+GY++IP SV ++YNE+G+PTGEA+VA
Sbjct: 915 PKINCGSGRVTP--IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVA 972
Query: 904 FESRDEATAAVIDLNDRPIGSRKVKLVL 931
+ +EA AA+ DLNDRP+G RKVKL L
Sbjct: 973 MINYNEAMAAIKDLNDRPVGPRKVKLTL 1000
Score = 61.6 bits (148), Expect = 3e-09
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 17/216 (7%)
Query: 289 NSQSSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNG 346
+S+S + +P YV + + S E D+R+FF G L + + L R
Sbjct: 269 HSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRNFFRGTDLTDEQIRFLYKDENRTR-YA 327
Query: 347 LVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQ 406
V F + +D AL ++ ++ R V + P + +Q + K+ G + P
Sbjct: 328 FVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRKQMLKFIARYE-KKRSGSLERDRPGHV 386
Query: 407 TLPRS-KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG 465
+ S + SGQK C+Y++ PF+ V FF + ED IY+ Y
Sbjct: 387 SQKYSQEGNSGQK-----------LCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYD 435
Query: 466 PNGKATGEGFVEFRNEAD-YKAALCRHKQYMGNRFI 500
G GE V+F++E KA ++++G +
Sbjct: 436 DKGVGLGEALVKFKSEEQAMKAERLNRRRFLGTEVL 471
Score = 59.3 bits (142), Expect = 2e-08
Identities = 81/384 (21%), Positives = 148/384 (38%), Gaps = 54/384 (14%)
Query: 310 GMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLM 367
G+PF A D+R FF GL + VH+ +G G + F + +D A+ R+ +
Sbjct: 9 GLPFIAGPVDIRHFFTGLTIPDGGVHI----IGGEIGEAFIIFATDEDARRAISRSGGFI 64
Query: 368 IQRYVEV-------------SPATERQWVAAGGHIT------------FKQNMGPSGQTH 402
VE+ T+R G T K+ SG
Sbjct: 65 KDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNSGYGS 124
Query: 403 PPPQT--LPRSKSPSGQKRSRSRSPHEA-GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS 459
Q + + G R R P +A ++L+GLP+ V FF L + D
Sbjct: 125 SINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV--DG 182
Query: 460 IYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLE------- 512
+ +G+ G+ V+F + D L H+ +MG+RFI+V +++ +E
Sbjct: 183 VIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSRFIEVMQGSEQQWIEFGGNAVK 242
Query: 513 KIDMIRKR--------LQNFSYDQREMILNPEGDVNSAKV--CAHITNIPFSITKMDVLQ 562
+ D++R+ + + + +R +P + + + H+ N+ SI + D+
Sbjct: 243 EGDVLRRSEEHSPPRGINDRHFRKRSHSKSPRRTRSRSPLGFYVHLKNLSLSIDERDLRN 302
Query: 563 FLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 622
F G + + + L + + A V FK D + LH+ L R + ++ +
Sbjct: 303 FFRGTDLTDEQIRFLYKDENR-TRYAFVMFKTLKDYNTALSLHKTVLQYRPVHIDPISRK 361
Query: 623 DMREIEKNPPAQGKKGLKMPVPGN 646
M + + L+ PG+
Sbjct: 362 QMLKFIARYEKKRSGSLERDRPGH 385
Score = 44.7 bits (104), Expect = 4e-04
Identities = 54/239 (22%), Positives = 93/239 (38%), Gaps = 50/239 (20%)
Query: 432 VYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRH 491
+ L GLPF A + FF L I + ++I G GE F+ F + D + A+ R
Sbjct: 5 IRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRAISRS 60
Query: 492 KQYMGNRFIQVHPITKKGMLEKIDMIR----------------KRLQNFSYDQREMILNP 535
++ + +++ +K M + I+M R L NF +E N
Sbjct: 61 GGFIKDSSVELFLSSKAEMQKTIEMKRTDRVGRGRPGSGTSGVDSLSNFIESVKEEASNS 120
Query: 536 ------------------EGDVNSAKV--------CAHITNIPFSITKMDVLQFLEGIPV 569
G++ K + +P+ + + DV F G+ V
Sbjct: 121 GYGSSINQDAGFHTNGTGHGNLRPRKTRPLKAENPYLFLRGLPYLVNEDDVRVFFSGLCV 180
Query: 570 DENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLEDMREIE 628
D V L ++G+ G A+V+F + DA + HR + R F+ V+ + + IE
Sbjct: 181 D--GVIFLKHHDGRNNGDAIVKFASCVDASGGLKCHRSFMGSR--FIEVMQGSEQQWIE 235
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 848 SSSGKPGPTV-IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 906
S G G + I ++N PF V+ E+ FF + + + L Y++KG+ GEA+V F+S
Sbjct: 391 SQEGNSGQKLCIYIRNFPFDVTKVEVQKFFADFLLAEDDIYLLYDDKGVGLGEALVKFKS 450
Query: 907 RDEATAA 913
++A A
Sbjct: 451 EEQAMKA 457
Score = 42.7 bits (99), Expect = 0.002
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 386 GGHITF-KQNMGPSGQTHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENK 444
GG F K NMG + P + +P K G R + + LPF+A
Sbjct: 893 GGKFDFGKHNMG----SFPEGRFMPDPKINCGSGRVTP---------IKIMNLPFKANVN 939
Query: 445 HVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
++DFF I+ DS+ I Y G TGE V N + AA+
Sbjct: 940 EILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAI 983
Score = 37.7 bits (86), Expect = 0.050
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
+ + +PF A N++ DFFHG R+ D+V + + G G +V ++ + A+K
Sbjct: 927 IKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGLPTGEAIVAMINYNEAMAAIK 984
Score = 35.8 bits (81), Expect = 0.19
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 544 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 601
V + +PF +D+ F G+ + + VH++ G +G+A + F ++DAR++
Sbjct: 3 VVIRLLGLPFIAGPVDIRHFFTGLTIPDGGVHII----GGEIGEAFIIFATDEDARRA 56
Score = 34.7 bits (78), Expect = 0.42
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 7 LQGLPIVAGTMDIRHFFSGLTIPDGGV---HIVGGELGEAFIVFATDEDARLGM 57
L+GLP + D+R FFSGL + DG + H G G+A + FA+ DA G+
Sbjct: 159 LRGLPYLVNEDDVRVFFSGLCV-DGVIFLKHHDGRNNGDAIVKFASCVDASGGL 211
Score = 32.3 bits (72), Expect = 2.1
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 525 SYDQREMILNPEGDVNSAKVCA-HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQ 583
S+ + + +P+ + S +V I N+PF ++L F G + ++V + + G
Sbjct: 905 SFPEGRFMPDPKINCGSGRVTPIKIMNLPFKANVNEILDFFHGYRIIPDSVSIQYNEQGL 964
Query: 584 GLGQALVQFKNEDDA 598
G+A+V N ++A
Sbjct: 965 PTGEAIVAMINYNEA 979
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 101 bits (251), Expect = 4e-21
Identities = 97/247 (39%), Positives = 110/247 (44%), Gaps = 49/247 (19%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMP----NAGLPGVGLPSAGLPGA-GLPSTGLPGSAITSA 685
P +G G + PG P +PG P + GLPG GLPG GLP G+PGS
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPG----DPGLPGQPGLP--GIPGSK-GEP 701
Query: 686 GLPGAGMPSA----GIPSAGGEEHAFLTVG--SKEANNGPPFNFPGNFG--GSNAFGPPI 737
G+PG G+P G P G A T G E GPP FPG G G GPP
Sbjct: 702 GIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP-GFPGPKGEPGFALPGPPG 760
Query: 738 PP--PGLGG--GAFGDAR-PGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQN 791
PP PG G G GD PG P G +GL GL GP GP+G
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP--------GPKGDVGPNG------- 805
Query: 792 FGNGPGSLGGP--PGFG-SGPPGLGSAPGHLGGPPAFG-PGPGPGPGPGPIHIGGPPGFA 847
PG +G P PG G GPPG PG +G P G PG PGP + + GPPG
Sbjct: 806 ---QPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Query: 848 SSSGKPG 854
S G PG
Sbjct: 863 GSPGIPG 869
Score = 97.8 bits (242), Expect = 4e-20
Identities = 103/268 (38%), Positives = 113/268 (42%), Gaps = 54/268 (20%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMP-------NAGLPGVGLPSAGLPGA----GLPS-TG 676
P QG +G P VPG P PG+P + G+ +GLP GLPG GLP G
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLP--GLPGPKGEPGLPGYPG 1092
Query: 677 LPG--SAITSAGLPGA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFN-----FPGNF 727
PG ++ GLPG G P A G P G G K + GPP N PG
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGIS-GPPGNPGLPGEPGPV 1151
Query: 728 GGSNAFGPPIPP--------PGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNL 779
GG G P PP G+ G A PG P GN G PGL PG L
Sbjct: 1152 GGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGL----PG-------L 1200
Query: 780 SGPSGFGGGPQNFGNGPGSLG--GPPGFGS-----GPPGLGSAPGHLGGPPAFGPGPGPG 832
SG G GG P GN PG G G PGF GPPG +PG P PGP
Sbjct: 1201 SGQKGDGGLPGIPGN-PGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGP 1259
Query: 833 PG-PGPIHIGGPPGFASSSGKPGPTVIK 859
PG PGP G PG G PG IK
Sbjct: 1260 PGRPGPTGFQGLPGPEGPPGLPGNGGIK 1287
Score = 85.9 bits (211), Expect = 2e-16
Identities = 99/293 (33%), Positives = 115/293 (39%), Gaps = 79/293 (26%)
Query: 631 PPAQGKKGLK-MPVPGNPAVPGMPNA-GLPGV-GLPSA-GLPGA-GLPSTGLPGSAITSA 685
P G GL + V G P PG+P G PG+ G+P G PG GL G PG S
Sbjct: 807 PGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER-GSP 865
Query: 686 GLPGAGMP-----SAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP- 739
G+PGA P S G+P G FPG G GPP PP
Sbjct: 866 GIPGAPGPIGPPGSPGLPGKAGAS-----------------GFPGTKGEMGMMGPPGPPG 908
Query: 740 ----------PGLGGGAFGDARPGMP-------SVGNSGLPG---------LGLD----V 769
PGL G +PG+P S G GLPG LG
Sbjct: 909 PLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGE 968
Query: 770 PGFGGGPNNLSGPSGFGGGPQNFG----NGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAF 825
PG G P +SGP G+ G P + G +G L GPPG G PGL PG +G P
Sbjct: 969 PGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGPPG-PKGNPGLPGQPGLIGPPGLK 1026
Query: 826 G-------PGPG-----PGPGPGPIHIGGP--PGFASSSGKPGPTVIKVQNMP 864
G PGP PGP P G P PG G PG + I + +P
Sbjct: 1027 GTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Score = 82.0 bits (201), Expect = 2e-15
Identities = 110/335 (32%), Positives = 127/335 (37%), Gaps = 113/335 (33%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMP-------NAGLPGV----------GLPSA-------G 666
P G KG+ P PGNP +PG P + G PG G+P G
Sbjct: 1127 PGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG 1185
Query: 667 LPGAGLPST-GLPGSAITSA--GLPGA-GMPSAGIPSAGGEE--HAFLTV-------GSK 713
PG G P GLPG + GLPG G P G+P GE H F V GS
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP--GLPGPKGEPGFHGFPGVQGPPGPPGSP 1243
Query: 714 -------EANNGP--PFNFPGNFGGSNAFGPPIPP--PGLGG--GAFGD-ARPGMPSV-- 757
+ N GP P PG G GP PP PG GG G G+ +PG+P +
Sbjct: 1244 GPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPG 1303
Query: 758 -----------GNSGLPGL-------GLD-VPGFGG--GPNNLSGPSGFGGGPQNFGN-G 795
GN G PGL GL VPGF G GP+ + G +G G P G G
Sbjct: 1304 LKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPG 1363
Query: 796 PGSLGGPPGFG------SGPPGLGSAPGHLGGPPAFGPGPGPGPG--------------- 834
P L GP G +GPPG+ PG G P GP PGP
Sbjct: 1364 PPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFD 1423
Query: 835 --------------PGPIHIGGPPGFASSSGKPGP 855
PG + GPPG G PGP
Sbjct: 1424 GAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGP 1458
Score = 81.3 bits (199), Expect = 4e-15
Identities = 79/220 (35%), Positives = 88/220 (40%), Gaps = 42/220 (19%)
Query: 645 GNPAVPGMPNAGLPGVGLPSA--GLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGG 702
G PG+P G+PGV P GLPG G PG + GLPG P G P G
Sbjct: 964 GEKGEPGLP--GIPGVSGPKGYQGLPG----DPGQPGLS-GQPGLPGPPGPK-GNPGLPG 1015
Query: 703 EEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP-----PGLGGGAFGDARPGMPSV 757
+ G K FPG G GP P PGL G PG+ S+
Sbjct: 1016 QPGLIGPPGLKGTIGD--MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSI 1073
Query: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPG 817
G GLPG P G G+ G P GS+G P G PGL PG
Sbjct: 1074 GLPGLPG-----------PKGEPGLPGYPGNP----GIKGSVGDP-----GLPGLPGTPG 1113
Query: 818 HLGGP--PAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
G P P F PGP PGP I GPPG G+PGP
Sbjct: 1114 AKGQPGLPGFPGTPGP---PGPKGISGPPGNPGLPGEPGP 1150
Score = 76.6 bits (187), Expect = 1e-13
Identities = 83/236 (35%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 644 PGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSA--GLPGA-GMPSA-GIPS 699
PG P +PG+P G PG S G PG G G A + GLPG G P A G P
Sbjct: 493 PGQPGLPGLP--GPPG----SLGFPG----QKGEKGQAGATGPKGLPGIPGAPGAPGFPG 542
Query: 700 AGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PGLGGGAFGDARPGMPSV 757
+ GE LT FPG G G P P PGL G D PG+P
Sbjct: 543 SKGEPGDILT-------------FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLP-- 587
Query: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGS-GPPGLGSAP 816
G G PG G+ G G P N G G P N G GPPGFG GP G
Sbjct: 588 GPKGEPG-GITFKGERGPPGN----PGLPGLPGNIGPM-----GPPGFGPPGPVGEKGIQ 637
Query: 817 GHLGGPPAFG-PGPGPGPGP-----------------GPIHIGGPPGFASSSGKPG 854
G G P G PGP PG G + + G PG G PG
Sbjct: 638 GVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG 693
Score = 76.3 bits (186), Expect = 1e-13
Identities = 95/310 (30%), Positives = 115/310 (37%), Gaps = 60/310 (19%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMPNAGLPGV-GLPSA-GLPGAG--LPSTGLPGSAITS 684
P G KG++ P +PG P PG+P G+PG G P G+PG G PGS
Sbjct: 83 PGPPGPKGIRGPPGLPGFPGTPGLP--GMPGHDGAPGPQGIPGCNGTKGERGFPGSP--- 137
Query: 685 AGLPGAGMPSA--GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGP-----PI 737
G PG P GIP GE + + + S G P +PG G GP PI
Sbjct: 138 -GFPGLQGPPGPPGIPGMKGEPGSII-MSSLPGPKGNP-GYPGPPGIQGLPGPTGIPGPI 194
Query: 738 PPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSG------------- 784
PPG G PG+P G G GL P G L GP G
Sbjct: 195 GPPGPPGLMGPPGPPGLP--GPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 785 --FGGGPQNFGNGPGSLG--------GPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPG-- 832
F G Q G G GPPG G G PG G P G PG
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 833 -----PG-PGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV 886
PG PG G G +G PGP + + ++I E + G +PG
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI--GLPGLPG-- 368
Query: 887 CLKYNEKGMP 896
+ E+G P
Sbjct: 369 --EKGERGFP 376
Score = 75.1 bits (183), Expect = 3e-13
Identities = 95/286 (33%), Positives = 107/286 (37%), Gaps = 71/286 (24%)
Query: 631 PPAQGKKGLKMP----VPGNPAVPGMP-------NAGLPGVGLPSA----GLPGA-GLPS 674
P QG GL P V G P PG P + G PG+ +P G PGA GLP
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLP- 434
Query: 675 TGLPGSA---------ITSAGLPGA-GMPS-------AGIPSAGGEEHAFLTVGSKEANN 717
G PG A I G PG G P G+ G+ F +G+ +
Sbjct: 435 -GPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT-CFNCIGTGISGP 492
Query: 718 ----------GPP--FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGL 765
GPP FPG G G P GL G PG P G+ G PG
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGAT-GPKGLPGIPGAPGAPGFP--GSKGEPGD 549
Query: 766 GLDVPGFGGGPNNLSGPS-----GFGGGPQNFG--NGPGSLGGPPGFG-------SGPPG 811
L PG G L P G G P G PG G P G G PG
Sbjct: 550 ILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPG 609
Query: 812 LGSAPGHLG--GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
L PG++G GPP FGP PGP G + G PG G PGP
Sbjct: 610 LPGLPGNIGPMGPPGFGP-PGPVGEKGIQGVAGNPG---QPGIPGP 651
Score = 72.4 bits (176), Expect = 2e-12
Identities = 81/224 (36%), Positives = 88/224 (39%), Gaps = 42/224 (18%)
Query: 657 LPGVGLPSAGLPGAGLPSTGLPGSAITSAGL-PGAGMPSAGIPSAGGEEHAFLTVGSKEA 715
L GV L +AGL L G P A G PG+ +GI GE E
Sbjct: 3 LRGVSL-AAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERG----FPGLEG 57
Query: 716 NNGPPFNFPGNFGGSNAFGPP----IP-PPGLGGGAFGDARPGMPSVGNSGLPGLGLDVP 770
+ G P FPG G G IP PPG G PG P G GLPG+ P
Sbjct: 58 HPGLP-GFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFP--GTPGLPGM----P 110
Query: 771 GFGGGPNNLSGPSGFGG-----GPQNFGNGPGSLG-----GPPGFGS--GPPG---LGSA 815
G G P GP G G G + F PG G GPPG G PG + S
Sbjct: 111 GHDGAP----GPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSL 166
Query: 816 PGHLG-----GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPG 854
PG G GPP PGP PGPI GPPG G PG
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPG 210
Score = 68.6 bits (166), Expect = 3e-11
Identities = 84/235 (35%), Positives = 94/235 (40%), Gaps = 60/235 (25%)
Query: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV----GLP----SAGLPGAG--LPSTGL 677
E P G G+K GNP PG+P GLPG+ G P + G PG GL
Sbjct: 1275 EGPPGLPGNGGIKGE-KGNPGQPGLP--GLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGL 1331
Query: 678 PGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPI 737
PG G PG PS G+P + G E +G GPP PG G S
Sbjct: 1332 PGVP----GFPGMKGPS-GVPGSAGPEGEPGLIGPP----GPP-GLPGPSGQSIIIKGDA 1381
Query: 738 PPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPG 797
PPG+ PG P G GLPG GP L GP+G G P G
Sbjct: 1382 GPPGI---------PGQP--GLKGLPG--------PQGPQGLPGPTGPPGDP-----GRN 1417
Query: 798 SLGGPPGFGS--GPPGLGSAPGHLG--GPPAFGPGPGPGPGPGPIHIGGPPGFAS 848
L G G G G PGL PG G GPP GP GP GPPG +S
Sbjct: 1418 GLPGFDGAGGRKGDPGLPGQPGTRGLDGPP--GPDGLQGP-------PGPPGTSS 1463
Score = 67.4 bits (163), Expect = 6e-11
Identities = 85/259 (32%), Positives = 96/259 (37%), Gaps = 61/259 (23%)
Query: 626 EIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGA----GLPSTGLPGSA 681
++E QG G + P PG P + G P G PG G G G P
Sbjct: 252 DVEFQKGDQGLPGDRGP-PGPPGIRGPP--GPPGGEKGEKGEQGEPGKRGKPGKDGENGQ 308
Query: 682 ITSAGLPG-AGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP---I 737
GLPG G P G P GE+ ++ + GPP GPP I
Sbjct: 309 PGIPGLPGDPGYP--GEPGRDGEK-------GQKGDTGPP-------------GPPGLVI 346
Query: 738 PPPGLG---GGAFGDARPGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFG----GGP 789
P PG G G PG+P G G PG+ GP L GP G GP
Sbjct: 347 PRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQ--------GPPGLPGPPGAAVMGPPGP 398
Query: 790 QNFGNGPGSLG--GPPGFG-SGPPGLGSAPGHLGGPPAFGP-GPGPGPG-----PGPIHI 840
F G G GPPG GPPGL PG G P GP GP P PGP
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGP--- 455
Query: 841 GGPPGFASSSGKPGPTVIK 859
GPPG G G +K
Sbjct: 456 PGPPGSPGDKGLQGEQGVK 474
Score = 65.5 bits (158), Expect = 2e-10
Identities = 79/260 (30%), Positives = 94/260 (36%), Gaps = 48/260 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPG--AGLPSTGLPGSAITSAGLP 688
P +G++G + G P +PG P A + G P G PG G PG +I G P
Sbjct: 367 PGEKGERGFP-GIQGPPGLPGPPGAAVMGPPGPP-GFPGERGQKGDEGPPGISIP--GPP 422
Query: 689 GA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PGLGG 744
G G P A G+P G + + GPP GPP P GL G
Sbjct: 423 GLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPP-------------GPPGSPGDKGLQG 469
Query: 745 -----GAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSL 799
G GD G SG PG +PG G P +L P G Q GP L
Sbjct: 470 EQGVKGDKGDTCFNCIGTGISGPPGQP-GLPGLPGPPGSLGFPGQKGEKGQAGATGPKGL 528
Query: 800 GGPPGFGSGP---------------PGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPP 844
G PG P PG+ G LG P A PG PG G P
Sbjct: 529 PGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGA----PGLPGLPGTPGQDGLP 584
Query: 845 GFASSSGKPGPTVIKVQNMP 864
G G+PG K + P
Sbjct: 585 GLPGPKGEPGGITFKGERGP 604
Score = 64.7 bits (156), Expect = 4e-10
Identities = 85/266 (31%), Positives = 98/266 (36%), Gaps = 56/266 (21%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG-AG 691
+G++G + G+P +PG P G PG P G+P P GLPG G
Sbjct: 47 KGERGFP-GLEGHPGLPGFPGPEGPPG---PRGQKGDDGIPGPPGPKGIRGPPGLPGFPG 102
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNGP-PFNFPGNFGGSNAFGPPIPP--PGLGG---- 744
P G+P G + A G N FPG+ G GPP PP PG+ G
Sbjct: 103 TP--GLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGS 160
Query: 745 -------GAFGDARPGMPSV-GNSGLPG-LGLDVPGFGGGPNNLSGPSGFGGGPQNFGN- 794
G G+ PG P G GLPG G+ P GP L GP G G P GN
Sbjct: 161 IIMSSLPGPKGN--PGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Query: 795 -----------GPGSLGGPPG---------------FGSGPPGLGSAPGHLGGPPAFGPG 828
G L GPPG F G GL G G P GP
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGP- 277
Query: 829 PGPGPGPGPIHIGGPPGFASSSGKPG 854
PGP G G G GKPG
Sbjct: 278 --PGPPGGEKGEKGEQGEPGKRGKPG 301
Score = 39.3 bits (90), Expect = 0.017
Identities = 35/128 (27%), Positives = 42/128 (32%), Gaps = 20/128 (15%)
Query: 160 PNMGASFGSPTFSSTVPSTA--SPMNTVPPPPIPPIPAMPSLPPMPS------------- 204
P G P T+ P PP +P P P +P
Sbjct: 1014 PGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSI 1073
Query: 205 -IPPIPVPPPVPTLPPVPPVPPIPPV---PSVPPMTPLPPMSGMPPLNPPPVAPLPAGMN 260
+P +P P P LP P P I P +P + P G P L P P P G
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 261 G-SGAPMN 267
G SG P N
Sbjct: 1134 GISGPPGN 1141
Score = 38.9 bits (89), Expect = 0.023
Identities = 38/148 (25%), Positives = 47/148 (31%), Gaps = 47/148 (31%)
Query: 175 VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTL----------------- 217
+P P PP +P P P LP MP P P +P
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 218 ---PPVPPVPP-------------------IPPVPSVPPMTPLPPMSGMP-PLNPPPVAP 254
PP PP P P P P + LP +G+P P+ PP
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPG--- 198
Query: 255 LPAGMNGSGAPMNL---NNNLNPMFLGP 279
P G+ G P L N+ F GP
Sbjct: 199 -PPGLMGPPGPPGLPGPKGNMGLNFQGP 225
Score = 38.9 bits (89), Expect = 0.023
Identities = 37/145 (25%), Positives = 49/145 (33%), Gaps = 14/145 (9%)
Query: 160 PNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVP---T 216
P S G P T P + P P +P +P P +P +P P P T
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 217 LPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMF 276
P P +P +P + P+ PP P P + G N P
Sbjct: 598 FKGERGPPGNPGLPGLP--------GNIGPMGPPGFGP-PGPVGEKGIQGVAGNPGQPGI 648
Query: 277 LGPLNPVNPIQMNSQSSVKPLPINP 301
GP +P Q +Q LP NP
Sbjct: 649 PGPKG--DPGQTITQPGKPGLPGNP 671
Score = 38.9 bits (89), Expect = 0.023
Identities = 39/151 (25%), Positives = 51/151 (33%), Gaps = 31/151 (20%)
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP 218
PP + G P +P P PP +P P P IP P P P P
Sbjct: 826 PPGIPGPIGQPGLHG-IPGEKGD----PGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSP 880
Query: 219 PVPPV-----------------PPIPPVP-SVPPMTPLPPMSGMPPLNPPPVAPLPAGMN 260
+P PP PP P +P + +P + G L P P P G
Sbjct: 881 GLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEK 940
Query: 261 GSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQ 291
GS P GP P++P + S+
Sbjct: 941 GSKG--------EPGLPGPPGPMDPNLLGSK 963
Score = 38.1 bits (87), Expect = 0.038
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 167 GSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPI 226
G+P P T+ P P +P P +P P P P LP +P
Sbjct: 641 GNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Query: 227 PPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAP 265
P +P + P P G P + PP AP G G P
Sbjct: 701 PGIPGIGLPGP-PGPKGFPGIPGPPGAPGTPGRIGLEGP 738
Score = 37.0 bits (84), Expect = 0.086
Identities = 44/176 (25%), Positives = 55/176 (31%), Gaps = 30/176 (17%)
Query: 98 PPANASRSGPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGT 157
PP G P G+ L T+ + P P V
Sbjct: 1004 PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG------------------ 1045
Query: 158 APPNMGASFGSPTFSSTVPSTASP-MNTVPPPPIPPIPAMPSLPPMPSIPPI------PV 210
P + GSP P ++++ P +P P LP P P I P
Sbjct: 1046 -PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Query: 211 PPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPP-PVAPLPAGMNGSGAP 265
P +P P P +P P P P P PP NP P P P G G G P
Sbjct: 1105 LPGLPGTPGAKGQPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVG--GGGHP 1157
Score = 35.8 bits (81), Expect = 0.19
Identities = 43/146 (29%), Positives = 52/146 (35%), Gaps = 25/146 (17%)
Query: 188 PPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP-----PVPPVPPIPPVPSVPPMTPLPPMS 242
P IP I +P P P IP PP P P PP PP P P P LP
Sbjct: 701 PGIPGI-GLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPP 759
Query: 243 GMP-------PLNP--------PPVAPLPAGMNGSGAPM-NLNNNLNPMFLGPLNPVNPI 286
G P L P PP P G++G P ++ N P GP+ P
Sbjct: 760 GPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQP---GPMGPPGLP 816
Query: 287 QMNSQSSVKPLPINPDDLYVSVHGMP 312
+ Q P I +HG+P
Sbjct: 817 GIGVQGPPGPPGIPGPIGQPGLHGIP 842
Score = 35.0 bits (79), Expect = 0.33
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP 218
PP GA+ P P PP I IP P L P P +P PP P P
Sbjct: 387 PP--GAAVMGPPGPPGFPGERGQKGDEGPPGIS-IPGPPGLDGQPGAPGLP-GPPGPAGP 442
Query: 219 PVPPVPPI-PPVPSVPPMTP 237
+PP I P P PP +P
Sbjct: 443 HIPPSDEICEPGPPGPPGSP 462
Score = 35.0 bits (79), Expect = 0.33
Identities = 26/82 (31%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 187 PPPIPPIPAMPS---LPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSG 243
PP +P + LP +P P +P P P P V PP P P L G
Sbjct: 1194 PPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG-PPGPPGSPGPALEGPKG 1252
Query: 244 MPPLNPPPVAPLPAGMNGSGAP 265
P PP P P G G P
Sbjct: 1253 NPGPQGPPGRPGPTGFQGLPGP 1274
Score = 33.1 bits (74), Expect = 1.2
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 186 PPPPIPPIPAMPSL---------PPMPSIPPIPVPPPVPTLPPVPPVPPI---PPVPSVP 233
P P PP P P+L P +P IP + P LP P P + P +P P
Sbjct: 946 PGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPP 1005
Query: 234 PMTPLPPMSGMPPLNPPPVA---------PLPAGMNGSGAP 265
P + G P L PP P P G+ G P
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGP 1046
Score = 31.2 bits (69), Expect = 4.7
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 194 PAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVA 253
P P LP +P + PP + P P + + P +P + P M G
Sbjct: 1293 PGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG---------- 1342
Query: 254 PLPAGMNGSGAPMNLNNNLNPMFLGPLNP 282
P+G+ GS P P +GP P
Sbjct: 1343 --PSGVPGSAGPEG-----EPGLIGPPGP 1364
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 101 bits (251), Expect = 4e-21
Identities = 97/247 (39%), Positives = 110/247 (44%), Gaps = 49/247 (19%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMP----NAGLPGVGLPSAGLPGA-GLPSTGLPGSAITSA 685
P +G G + PG P +PG P + GLPG GLPG GLP G+PGS
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPG----DPGLPGQPGLP--GIPGSK-GEP 701
Query: 686 GLPGAGMPSA----GIPSAGGEEHAFLTVG--SKEANNGPPFNFPGNFG--GSNAFGPPI 737
G+PG G+P G P G A T G E GPP FPG G G GPP
Sbjct: 702 GIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP-GFPGPKGEPGFALPGPPG 760
Query: 738 PP--PGLGG--GAFGDAR-PGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQN 791
PP PG G G GD PG P G +GL GL GP GP+G
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP--------GPKGDVGPNG------- 805
Query: 792 FGNGPGSLGGP--PGFG-SGPPGLGSAPGHLGGPPAFG-PGPGPGPGPGPIHIGGPPGFA 847
PG +G P PG G GPPG PG +G P G PG PGP + + GPPG
Sbjct: 806 ---QPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Query: 848 SSSGKPG 854
S G PG
Sbjct: 863 GSPGIPG 869
Score = 88.2 bits (217), Expect = 3e-17
Identities = 100/278 (35%), Positives = 111/278 (39%), Gaps = 60/278 (21%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMP-------NAGLPGVGLPSAGLPGA----GLPS-TG 676
P QG +G P VPG P PG+P + G+ +GLP GLPG GLP G
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLP--GLPGPKGEPGLPGYPG 1092
Query: 677 LPG--SAITSAGLPGA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFN-----FPGNF 727
PG ++ GLPG G P A G P G G K + GPP N PG
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGIS-GPPGNPGLPGEPGPV 1151
Query: 728 GGSNAFGPPIPP--------PGLGGGAFGDARPGMPSVGNSGLPGL-GLD-------VPG 771
GG G P PP G+ G A PG P GN G PGL GL +PG
Sbjct: 1152 GGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPG 1211
Query: 772 FGGGPNNLSGPSG---FGGGPQNFGNGPGSLGGPPGFG----SGPPGLGSAPGHLGGPPA 824
G P L GP G F G P GP G PG G PG PG G P
Sbjct: 1212 IPGNPG-LPGPKGEPGFHGFPGV--QGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGP 1268
Query: 825 FGPGPGPGPG--------PGPIHIGGPPGFASSSGKPG 854
GP PG G PG + G PG G PG
Sbjct: 1269 EGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPG 1306
Score = 85.9 bits (211), Expect = 2e-16
Identities = 99/293 (33%), Positives = 115/293 (39%), Gaps = 79/293 (26%)
Query: 631 PPAQGKKGLK-MPVPGNPAVPGMPNA-GLPGV-GLPSA-GLPGA-GLPSTGLPGSAITSA 685
P G GL + V G P PG+P G PG+ G+P G PG GL G PG S
Sbjct: 807 PGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER-GSP 865
Query: 686 GLPGAGMP-----SAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP- 739
G+PGA P S G+P G FPG G GPP PP
Sbjct: 866 GIPGAPGPIGPPGSPGLPGKAGAS-----------------GFPGTKGEMGMMGPPGPPG 908
Query: 740 ----------PGLGGGAFGDARPGMP-------SVGNSGLPG---------LGLD----V 769
PGL G +PG+P S G GLPG LG
Sbjct: 909 PLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGE 968
Query: 770 PGFGGGPNNLSGPSGFGGGPQNFG----NGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAF 825
PG G P +SGP G+ G P + G +G L GPPG G PGL PG +G P
Sbjct: 969 PGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGPPG-PKGNPGLPGQPGLIGPPGLK 1026
Query: 826 G-------PGPG-----PGPGPGPIHIGGP--PGFASSSGKPGPTVIKVQNMP 864
G PGP PGP P G P PG G PG + I + +P
Sbjct: 1027 GTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Score = 83.2 bits (204), Expect = 1e-15
Identities = 96/298 (32%), Positives = 114/298 (38%), Gaps = 93/298 (31%)
Query: 631 PPAQGKKGLK-MPVPGNPAVPGMP-------NAGLPGV----GLPSA-------GLPGAG 671
P G+KG P GNP PG+P + GLPG+ GLP G PG
Sbjct: 1175 PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQ 1234
Query: 672 LPS--TGLPGSAITSA-------------GLPGAGMPSAGIPSAGGEEHAFLTVGSKEAN 716
P G PG A+ GLPG P G+P GG + ++ N
Sbjct: 1235 GPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPP-GLPGNGG-------IKGEKGN 1286
Query: 717 NGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSV-GNSGLPGLGLDVPGFGG- 774
G P PG G GPP GL G RPG+ + G+ GLPG VPGF G
Sbjct: 1287 PGQP-GLPGLPGLKGDQGPP----GLQGNP---GRPGLNGMKGDPGLPG----VPGFPGM 1334
Query: 775 -GPNNLSGPSGFGGGPQNFGN-GPGSLGGPPGFG------SGPPGLGSAPGHLGGPPAFG 826
GP+ + G +G G P G GP L GP G +GPPG+ PG G P G
Sbjct: 1335 KGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQG 1394
Query: 827 PGPGPGPG-----------------------------PGPIHIGGPPGFASSSGKPGP 855
P PGP PG + GPPG G PGP
Sbjct: 1395 PQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGP 1452
Score = 82.0 bits (201), Expect = 2e-15
Identities = 95/274 (34%), Positives = 110/274 (40%), Gaps = 66/274 (24%)
Query: 631 PPAQGKKGLKMPV--PGNPAVPGMPNA-GLPGVG--LPSAGLPGA----GLPS-TGLPGS 680
P G+ GL P GNP +PG P G PG+ + G PG G P +G+PG
Sbjct: 993 PGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQ 1052
Query: 681 AITSAGLPGA-------GMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAF 733
S GLPG G+ S G+P G + G P +PGN G +
Sbjct: 1053 P-GSPGLPGQKGDKGDPGISSIGLPGLPGPK----------GEPGLP-GYPGNPGIKGSV 1100
Query: 734 GPPIPPPGLGGGAFGDARPGMPSV----------------GNSGLPGLGLDVPGFGGGPN 777
G P PGL G +PG+P GN GLPG P GGG
Sbjct: 1101 GDP-GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE--PGPVGGGGHP 1157
Query: 778 NLSGPSGFGGGPQNFGNGPGSLG-----GPPGFGS-GPPGLGSAPGHLG--GPPAFGPGP 829
GP G G P G PG G G PGFG+ GPPGL G G G P P
Sbjct: 1158 GQPGPPGEKGKPGQDGI-PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP 1216
Query: 830 G-PGPGPGPIHIG-----GPPGFASSSGKPGPTV 857
G PGP P G GPPG G PGP +
Sbjct: 1217 GLPGPKGEPGFHGFPGVQGPPG---PPGSPGPAL 1247
Score = 81.3 bits (199), Expect = 4e-15
Identities = 79/220 (35%), Positives = 88/220 (40%), Gaps = 42/220 (19%)
Query: 645 GNPAVPGMPNAGLPGVGLPSA--GLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGG 702
G PG+P G+PGV P GLPG G PG + GLPG P G P G
Sbjct: 964 GEKGEPGLP--GIPGVSGPKGYQGLPG----DPGQPGLS-GQPGLPGPPGPK-GNPGLPG 1015
Query: 703 EEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP-----PGLGGGAFGDARPGMPSV 757
+ G K FPG G GP P PGL G PG+ S+
Sbjct: 1016 QPGLIGPPGLKGTIGD--MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSI 1073
Query: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPG 817
G GLPG P G G+ G P GS+G P G PGL PG
Sbjct: 1074 GLPGLPG-----------PKGEPGLPGYPGNP----GIKGSVGDP-----GLPGLPGTPG 1113
Query: 818 HLGGP--PAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
G P P F PGP PGP I GPPG G+PGP
Sbjct: 1114 AKGQPGLPGFPGTPGP---PGPKGISGPPGNPGLPGEPGP 1150
Score = 80.9 bits (198), Expect = 5e-15
Identities = 87/254 (34%), Positives = 99/254 (38%), Gaps = 36/254 (14%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSA--GLPGAG--LPSTGLPGSAITSA 685
P G KG + +PG+P PG+ GLPG P GLPG + GL G+ I
Sbjct: 975 PGVSGPKGYQ-GLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGT-IGDM 1032
Query: 686 GLPGA----GMPS-AGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP- 739
G PG G P +G+P G G K PG G G P P
Sbjct: 1033 GFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPG 1092
Query: 740 -PGLGGGAFGDARPGMPSV-GNSGLPGLGLDVPGFGG-----GPNNLSGPSG-------- 784
PG+ G PG+P G G PGL PGF G GP +SGP G
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGL----PGFPGTPGPPGPKGISGPPGNPGLPGEP 1148
Query: 785 --FGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPG-PGPIHIG 841
GGG GP G PG G PG G G P PGP PG G G
Sbjct: 1149 GPVGGGGHPGQPGPPGEKGKPG-QDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG 1207
Query: 842 GPPGFASSSGKPGP 855
G PG + G PGP
Sbjct: 1208 GLPGIPGNPGLPGP 1221
Score = 80.9 bits (198), Expect = 5e-15
Identities = 110/299 (36%), Positives = 119/299 (39%), Gaps = 85/299 (28%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMP-------NAGLPGV----------GLPSA-------G 666
P G KG+ P PGNP +PG P + G PG G+P G
Sbjct: 1127 PGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG 1185
Query: 667 LPGAGLPST-GLPGSAITSA--GLPGA-GMPSAGIPSAGGEE--HAFLTV-------GSK 713
PG G P GLPG + GLPG G P G+P GE H F V GS
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP--GLPGPKGEPGFHGFPGVQGPPGPPGSP 1243
Query: 714 -EANNGPPFNFPGNFGGSNAFGPPIP--PPGL--GGGAFGD-ARPGMPSVGNSGLPGLGL 767
A GP N PG G G P P PPGL GG G+ PG P G GLPGL
Sbjct: 1244 GPALEGPKGN-PGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNPGQP--GLPGLPGLKG 1300
Query: 768 DV--PGFGGGP-----NNLSGPSGFGGGPQNFG-----NGPGSLG--GPPGFGSGPPGLG 813
D PG G P N + G G G P G PGS G G PG GPPG
Sbjct: 1301 DQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGL-IGPPGPP 1359
Query: 814 SAPGHLG---------GPPAFGPGPG----PGPG-----PGPIHIGGPPGFASSSGKPG 854
PG G GPP PG PGP PGP GPPG +G PG
Sbjct: 1360 GLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPT---GPPGDPGRNGLPG 1415
Score = 76.6 bits (187), Expect = 1e-13
Identities = 83/236 (35%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 644 PGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSA--GLPGA-GMPSA-GIPS 699
PG P +PG+P G PG S G PG G G A + GLPG G P A G P
Sbjct: 493 PGQPGLPGLP--GPPG----SLGFPG----QKGEKGQAGATGPKGLPGIPGAPGAPGFPG 542
Query: 700 AGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PGLGGGAFGDARPGMPSV 757
+ GE LT FPG G G P P PGL G D PG+P
Sbjct: 543 SKGEPGDILT-------------FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLP-- 587
Query: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGS-GPPGLGSAP 816
G G PG G+ G G P N G G P N G GPPGFG GP G
Sbjct: 588 GPKGEPG-GITFKGERGPPGN----PGLPGLPGNIGPM-----GPPGFGPPGPVGEKGIQ 637
Query: 817 GHLGGPPAFG-PGPGPGPGP-----------------GPIHIGGPPGFASSSGKPG 854
G G P G PGP PG G + + G PG G PG
Sbjct: 638 GVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG 693
Score = 76.3 bits (186), Expect = 1e-13
Identities = 95/310 (30%), Positives = 115/310 (37%), Gaps = 60/310 (19%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMPNAGLPGV-GLPSA-GLPGAG--LPSTGLPGSAITS 684
P G KG++ P +PG P PG+P G+PG G P G+PG G PGS
Sbjct: 83 PGPPGPKGIRGPPGLPGFPGTPGLP--GMPGHDGAPGPQGIPGCNGTKGERGFPGSP--- 137
Query: 685 AGLPGAGMPSA--GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGP-----PI 737
G PG P GIP GE + + + S G P +PG G GP PI
Sbjct: 138 -GFPGLQGPPGPPGIPGMKGEPGSII-MSSLPGPKGNP-GYPGPPGIQGLPGPTGIPGPI 194
Query: 738 PPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSG------------- 784
PPG G PG+P G G GL P G L GP G
Sbjct: 195 GPPGPPGLMGPPGPPGLP--GPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 785 --FGGGPQNFGNGPGSLG--------GPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPG-- 832
F G Q G G GPPG G G PG G P G PG
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 833 -----PG-PGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV 886
PG PG G G +G PGP + + ++I E + G +PG
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI--GLPGLPG-- 368
Query: 887 CLKYNEKGMP 896
+ E+G P
Sbjct: 369 --EKGERGFP 376
Score = 75.1 bits (183), Expect = 3e-13
Identities = 95/286 (33%), Positives = 107/286 (37%), Gaps = 71/286 (24%)
Query: 631 PPAQGKKGLKMP----VPGNPAVPGMP-------NAGLPGVGLPSA----GLPGA-GLPS 674
P QG GL P V G P PG P + G PG+ +P G PGA GLP
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLP- 434
Query: 675 TGLPGSA---------ITSAGLPGA-GMPS-------AGIPSAGGEEHAFLTVGSKEANN 717
G PG A I G PG G P G+ G+ F +G+ +
Sbjct: 435 -GPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT-CFNCIGTGISGP 492
Query: 718 ----------GPP--FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGL 765
GPP FPG G G P GL G PG P G+ G PG
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGAT-GPKGLPGIPGAPGAPGFP--GSKGEPGD 549
Query: 766 GLDVPGFGGGPNNLSGPS-----GFGGGPQNFG--NGPGSLGGPPGFG-------SGPPG 811
L PG G L P G G P G PG G P G G PG
Sbjct: 550 ILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPG 609
Query: 812 LGSAPGHLG--GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
L PG++G GPP FGP PGP G + G PG G PGP
Sbjct: 610 LPGLPGNIGPMGPPGFGP-PGPVGEKGIQGVAGNPG---QPGIPGP 651
Score = 72.4 bits (176), Expect = 2e-12
Identities = 81/224 (36%), Positives = 88/224 (39%), Gaps = 42/224 (18%)
Query: 657 LPGVGLPSAGLPGAGLPSTGLPGSAITSAGL-PGAGMPSAGIPSAGGEEHAFLTVGSKEA 715
L GV L +AGL L G P A G PG+ +GI GE E
Sbjct: 3 LRGVSL-AAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERG----FPGLEG 57
Query: 716 NNGPPFNFPGNFGGSNAFGPP----IP-PPGLGGGAFGDARPGMPSVGNSGLPGLGLDVP 770
+ G P FPG G G IP PPG G PG P G GLPG+ P
Sbjct: 58 HPGLP-GFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFP--GTPGLPGM----P 110
Query: 771 GFGGGPNNLSGPSGFGG-----GPQNFGNGPGSLG-----GPPGFGS--GPPG---LGSA 815
G G P GP G G G + F PG G GPPG G PG + S
Sbjct: 111 GHDGAP----GPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSL 166
Query: 816 PGHLG-----GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPG 854
PG G GPP PGP PGPI GPPG G PG
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPG 210
Score = 68.6 bits (166), Expect = 3e-11
Identities = 84/235 (35%), Positives = 94/235 (40%), Gaps = 60/235 (25%)
Query: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGV----GLP----SAGLPGAG--LPSTGL 677
E P G G+K GNP PG+P GLPG+ G P + G PG GL
Sbjct: 1269 EGPPGLPGNGGIKGE-KGNPGQPGLP--GLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGL 1325
Query: 678 PGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPI 737
PG G PG PS G+P + G E +G GPP PG G S
Sbjct: 1326 PGVP----GFPGMKGPS-GVPGSAGPEGEPGLIGPP----GPP-GLPGPSGQSIIIKGDA 1375
Query: 738 PPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPG 797
PPG+ PG P G GLPG GP L GP+G G P G
Sbjct: 1376 GPPGI---------PGQP--GLKGLPG--------PQGPQGLPGPTGPPGDP-----GRN 1411
Query: 798 SLGGPPGFGS--GPPGLGSAPGHLG--GPPAFGPGPGPGPGPGPIHIGGPPGFAS 848
L G G G G PGL PG G GPP GP GP GPPG +S
Sbjct: 1412 GLPGFDGAGGRKGDPGLPGQPGTRGLDGPP--GPDGLQGP-------PGPPGTSS 1457
Score = 67.4 bits (163), Expect = 6e-11
Identities = 85/259 (32%), Positives = 96/259 (37%), Gaps = 61/259 (23%)
Query: 626 EIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGA----GLPSTGLPGSA 681
++E QG G + P PG P + G P G PG G G G P
Sbjct: 252 DVEFQKGDQGLPGDRGP-PGPPGIRGPP--GPPGGEKGEKGEQGEPGKRGKPGKDGENGQ 308
Query: 682 ITSAGLPG-AGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP---I 737
GLPG G P G P GE+ ++ + GPP GPP I
Sbjct: 309 PGIPGLPGDPGYP--GEPGRDGEK-------GQKGDTGPP-------------GPPGLVI 346
Query: 738 PPPGLG---GGAFGDARPGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFG----GGP 789
P PG G G PG+P G G PG+ GP L GP G GP
Sbjct: 347 PRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQ--------GPPGLPGPPGAAVMGPPGP 398
Query: 790 QNFGNGPGSLG--GPPGFG-SGPPGLGSAPGHLGGPPAFGP-GPGPGPG-----PGPIHI 840
F G G GPPG GPPGL PG G P GP GP P PGP
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGP--- 455
Query: 841 GGPPGFASSSGKPGPTVIK 859
GPPG G G +K
Sbjct: 456 PGPPGSPGDKGLQGEQGVK 474
Score = 65.5 bits (158), Expect = 2e-10
Identities = 79/260 (30%), Positives = 94/260 (36%), Gaps = 48/260 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPG--AGLPSTGLPGSAITSAGLP 688
P +G++G + G P +PG P A + G P G PG G PG +I G P
Sbjct: 367 PGEKGERGFP-GIQGPPGLPGPPGAAVMGPPGPP-GFPGERGQKGDEGPPGISIP--GPP 422
Query: 689 GA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PGLGG 744
G G P A G+P G + + GPP GPP P GL G
Sbjct: 423 GLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPP-------------GPPGSPGDKGLQG 469
Query: 745 -----GAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSL 799
G GD G SG PG +PG G P +L P G Q GP L
Sbjct: 470 EQGVKGDKGDTCFNCIGTGISGPPGQP-GLPGLPGPPGSLGFPGQKGEKGQAGATGPKGL 528
Query: 800 GGPPGFGSGP---------------PGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPP 844
G PG P PG+ G LG P A PG PG G P
Sbjct: 529 PGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGA----PGLPGLPGTPGQDGLP 584
Query: 845 GFASSSGKPGPTVIKVQNMP 864
G G+PG K + P
Sbjct: 585 GLPGPKGEPGGITFKGERGP 604
Score = 64.7 bits (156), Expect = 4e-10
Identities = 85/266 (31%), Positives = 98/266 (36%), Gaps = 56/266 (21%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG-AG 691
+G++G + G+P +PG P G PG P G+P P GLPG G
Sbjct: 47 KGERGFP-GLEGHPGLPGFPGPEGPPG---PRGQKGDDGIPGPPGPKGIRGPPGLPGFPG 102
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNGP-PFNFPGNFGGSNAFGPPIPP--PGLGG---- 744
P G+P G + A G N FPG+ G GPP PP PG+ G
Sbjct: 103 TP--GLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGS 160
Query: 745 -------GAFGDARPGMPSV-GNSGLPG-LGLDVPGFGGGPNNLSGPSGFGGGPQNFGN- 794
G G+ PG P G GLPG G+ P GP L GP G G P GN
Sbjct: 161 IIMSSLPGPKGN--PGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Query: 795 -----------GPGSLGGPPG---------------FGSGPPGLGSAPGHLGGPPAFGPG 828
G L GPPG F G GL G G P GP
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGP- 277
Query: 829 PGPGPGPGPIHIGGPPGFASSSGKPG 854
PGP G G G GKPG
Sbjct: 278 --PGPPGGEKGEKGEQGEPGKRGKPG 301
Score = 39.3 bits (90), Expect = 0.017
Identities = 35/128 (27%), Positives = 42/128 (32%), Gaps = 20/128 (15%)
Query: 160 PNMGASFGSPTFSSTVPSTA--SPMNTVPPPPIPPIPAMPSLPPMPS------------- 204
P G P T+ P PP +P P P +P
Sbjct: 1014 PGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSI 1073
Query: 205 -IPPIPVPPPVPTLPPVPPVPPIPPV---PSVPPMTPLPPMSGMPPLNPPPVAPLPAGMN 260
+P +P P P LP P P I P +P + P G P L P P P G
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 261 G-SGAPMN 267
G SG P N
Sbjct: 1134 GISGPPGN 1141
Score = 38.9 bits (89), Expect = 0.023
Identities = 38/148 (25%), Positives = 47/148 (31%), Gaps = 47/148 (31%)
Query: 175 VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTL----------------- 217
+P P PP +P P P LP MP P P +P
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 218 ---PPVPPVPP-------------------IPPVPSVPPMTPLPPMSGMP-PLNPPPVAP 254
PP PP P P P P + LP +G+P P+ PP
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPG--- 198
Query: 255 LPAGMNGSGAPMNL---NNNLNPMFLGP 279
P G+ G P L N+ F GP
Sbjct: 199 -PPGLMGPPGPPGLPGPKGNMGLNFQGP 225
Score = 38.9 bits (89), Expect = 0.023
Identities = 37/145 (25%), Positives = 49/145 (33%), Gaps = 14/145 (9%)
Query: 160 PNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVP---T 216
P S G P T P + P P +P +P P +P +P P P T
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 217 LPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMF 276
P P +P +P + P+ PP P P + G N P
Sbjct: 598 FKGERGPPGNPGLPGLP--------GNIGPMGPPGFGP-PGPVGEKGIQGVAGNPGQPGI 648
Query: 277 LGPLNPVNPIQMNSQSSVKPLPINP 301
GP +P Q +Q LP NP
Sbjct: 649 PGPKG--DPGQTITQPGKPGLPGNP 671
Score = 38.9 bits (89), Expect = 0.023
Identities = 39/151 (25%), Positives = 51/151 (33%), Gaps = 31/151 (20%)
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP 218
PP + G P +P P PP +P P P IP P P P P
Sbjct: 826 PPGIPGPIGQPGLHG-IPGEKGD----PGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSP 880
Query: 219 PVPPV-----------------PPIPPVP-SVPPMTPLPPMSGMPPLNPPPVAPLPAGMN 260
+P PP PP P +P + +P + G L P P P G
Sbjct: 881 GLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEK 940
Query: 261 GSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQ 291
GS P GP P++P + S+
Sbjct: 941 GSKG--------EPGLPGPPGPMDPNLLGSK 963
Score = 38.1 bits (87), Expect = 0.038
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 167 GSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPI 226
G+P P T+ P P +P P +P P P P LP +P
Sbjct: 641 GNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Query: 227 PPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAP 265
P +P + P P G P + PP AP G G P
Sbjct: 701 PGIPGIGLPGP-PGPKGFPGIPGPPGAPGTPGRIGLEGP 738
Score = 37.0 bits (84), Expect = 0.086
Identities = 44/176 (25%), Positives = 55/176 (31%), Gaps = 30/176 (17%)
Query: 98 PPANASRSGPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGT 157
PP G P G+ L T+ + P P V
Sbjct: 1004 PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG------------------ 1045
Query: 158 APPNMGASFGSPTFSSTVPSTASP-MNTVPPPPIPPIPAMPSLPPMPSIPPI------PV 210
P + GSP P ++++ P +P P LP P P I P
Sbjct: 1046 -PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Query: 211 PPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPP-PVAPLPAGMNGSGAP 265
P +P P P +P P P P P PP NP P P P G G G P
Sbjct: 1105 LPGLPGTPGAKGQPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVG--GGGHP 1157
Score = 35.8 bits (81), Expect = 0.19
Identities = 43/146 (29%), Positives = 52/146 (35%), Gaps = 25/146 (17%)
Query: 188 PPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP-----PVPPVPPIPPVPSVPPMTPLPPMS 242
P IP I +P P P IP PP P P PP PP P P P LP
Sbjct: 701 PGIPGI-GLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPP 759
Query: 243 GMP-------PLNP--------PPVAPLPAGMNGSGAPM-NLNNNLNPMFLGPLNPVNPI 286
G P L P PP P G++G P ++ N P GP+ P
Sbjct: 760 GPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQP---GPMGPPGLP 816
Query: 287 QMNSQSSVKPLPINPDDLYVSVHGMP 312
+ Q P I +HG+P
Sbjct: 817 GIGVQGPPGPPGIPGPIGQPGLHGIP 842
Score = 35.0 bits (79), Expect = 0.33
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP 218
PP GA+ P P PP I IP P L P P +P PP P P
Sbjct: 387 PP--GAAVMGPPGPPGFPGERGQKGDEGPPGIS-IPGPPGLDGQPGAPGLP-GPPGPAGP 442
Query: 219 PVPPVPPI-PPVPSVPPMTP 237
+PP I P P PP +P
Sbjct: 443 HIPPSDEICEPGPPGPPGSP 462
Score = 33.1 bits (74), Expect = 1.2
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 186 PPPPIPPIPAMPSL---------PPMPSIPPIPVPPPVPTLPPVPPVPPI---PPVPSVP 233
P P PP P P+L P +P IP + P LP P P + P +P P
Sbjct: 946 PGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPP 1005
Query: 234 PMTPLPPMSGMPPLNPPPVA---------PLPAGMNGSGAP 265
P + G P L PP P P G+ G P
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGP 1046
Score = 32.3 bits (72), Expect = 2.1
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 187 PPPIPPIPAMPS---LPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSG 243
PP +P + LP +P P +P P P P V P PP +P P + G
Sbjct: 1194 PPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG----PPGPPGSPGPALEG 1249
Query: 244 MPPLNPPPVAPL-PAGMNGSGAPMNLNNN 271
P NP P P G+ G P L N
Sbjct: 1250 -PKGNPGPQGPPGRPGLPGPEGPPGLPGN 1277
Score = 31.2 bits (69), Expect = 4.7
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 194 PAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVA 253
P P LP +P + PP + P P + + P +P + P M G
Sbjct: 1287 PGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG---------- 1336
Query: 254 PLPAGMNGSGAPMNLNNNLNPMFLGPLNP 282
P+G+ GS P P +GP P
Sbjct: 1337 --PSGVPGSAGPEG-----EPGLIGPPGP 1358
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 101 bits (251), Expect = 4e-21
Identities = 97/247 (39%), Positives = 110/247 (44%), Gaps = 49/247 (19%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMP----NAGLPGVGLPSAGLPGA-GLPSTGLPGSAITSA 685
P +G G + PG P +PG P + GLPG GLPG GLP G+PGS
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPG----DPGLPGQPGLP--GIPGSK-GEP 701
Query: 686 GLPGAGMPSA----GIPSAGGEEHAFLTVG--SKEANNGPPFNFPGNFG--GSNAFGPPI 737
G+PG G+P G P G A T G E GPP FPG G G GPP
Sbjct: 702 GIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPP-GFPGPKGEPGFALPGPPG 760
Query: 738 PP--PGLGG--GAFGDAR-PGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQN 791
PP PG G G GD PG P G +GL GL GP GP+G
Sbjct: 761 PPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLP--------GPKGDVGPNG------- 805
Query: 792 FGNGPGSLGGP--PGFG-SGPPGLGSAPGHLGGPPAFG-PGPGPGPGPGPIHIGGPPGFA 847
PG +G P PG G GPPG PG +G P G PG PGP + + GPPG
Sbjct: 806 ---QPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER 862
Query: 848 SSSGKPG 854
S G PG
Sbjct: 863 GSPGIPG 869
Score = 95.9 bits (237), Expect = 2e-19
Identities = 101/259 (38%), Positives = 111/259 (42%), Gaps = 53/259 (20%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMP-------NAGLPGVGLPSAGLPGA----GLPS-TG 676
P QG +G P VPG P PG+P + G+ +GLP GLPG GLP G
Sbjct: 1035 PGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLP--GLPGPKGEPGLPGYPG 1092
Query: 677 LPG--SAITSAGLPGA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFN-----FPGNF 727
PG ++ GLPG G P A G P G G K + GPP N PG
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGIS-GPPGNPGLPGEPGPV 1151
Query: 728 GGSNAFGPPIPP--------PGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNL 779
GG G P PP G+ G A PG P GN G PGL PG L
Sbjct: 1152 GGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGL----PG-------L 1200
Query: 780 SGPSGFGGGPQNFGNGPGSLG--GPPGFGSGPPGLGSAPGHLGGPPAFGPG-PGPGPGPG 836
SG G GG P GN PG G G PGF G PG+ PG G P GP GP PG
Sbjct: 1201 SGQKGDGGLPGIPGN-PGLPGPKGEPGF-HGFPGVQGPPGPPGSP---GPALEGPKGNPG 1255
Query: 837 PIHIGGPPGFASSSGKPGP 855
P G PGF G GP
Sbjct: 1256 PQGPPGRPGFQGLPGPEGP 1274
Score = 85.9 bits (211), Expect = 2e-16
Identities = 99/293 (33%), Positives = 115/293 (39%), Gaps = 79/293 (26%)
Query: 631 PPAQGKKGLK-MPVPGNPAVPGMPNA-GLPGV-GLPSA-GLPGA-GLPSTGLPGSAITSA 685
P G GL + V G P PG+P G PG+ G+P G PG GL G PG S
Sbjct: 807 PGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER-GSP 865
Query: 686 GLPGAGMP-----SAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP- 739
G+PGA P S G+P G FPG G GPP PP
Sbjct: 866 GIPGAPGPIGPPGSPGLPGKAGAS-----------------GFPGTKGEMGMMGPPGPPG 908
Query: 740 ----------PGLGGGAFGDARPGMP-------SVGNSGLPG---------LGLD----V 769
PGL G +PG+P S G GLPG LG
Sbjct: 909 PLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGE 968
Query: 770 PGFGGGPNNLSGPSGFGGGPQNFG----NGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAF 825
PG G P +SGP G+ G P + G +G L GPPG G PGL PG +G P
Sbjct: 969 PGLPGIPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGPPG-PKGNPGLPGQPGLIGPPGLK 1026
Query: 826 G-------PGPG-----PGPGPGPIHIGGP--PGFASSSGKPGPTVIKVQNMP 864
G PGP PGP P G P PG G PG + I + +P
Sbjct: 1027 GTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLP 1079
Score = 82.4 bits (202), Expect = 2e-15
Identities = 92/278 (33%), Positives = 109/278 (39%), Gaps = 73/278 (26%)
Query: 631 PPAQGKKGLK-MP-VPGNPAVPGMPNA----GLPGV-------GLPSAGLPGA-GLPSTG 676
P G+KG +P +PGNP +PG G PGV G P L G G P
Sbjct: 1198 PGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQ 1257
Query: 677 LPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP 736
P GLPG P G+P GG + ++ N G P PG G GPP
Sbjct: 1258 GPPGRPGFQGLPGPEGPP-GLPGNGG-------IKGEKGNPGQP-GLPGLPGLKGDQGPP 1308
Query: 737 IPPPGLGGGAFGDARPGMPSV-GNSGLPGLGLDVPGFGG--GPNNLSGPSGFGGGPQNFG 793
GL G RPG+ + G+ GLPG VPGF G GP+ + G +G G P G
Sbjct: 1309 ----GLQGNP---GRPGLNGMKGDPGLPG----VPGFPGMKGPSGVPGSAGPEGEPGLIG 1357
Query: 794 N-GPGSLGGPPGFG------SGPPGLGSAPGHLGGPPAFGPGPGPGPG------------ 834
GP L GP G +GPPG+ PG G P GP PGP
Sbjct: 1358 PPGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLP 1417
Query: 835 -----------------PGPIHIGGPPGFASSSGKPGP 855
PG + GPPG G PGP
Sbjct: 1418 GFDGAGGRKGDPGLPGQPGTRGLDGPPGPDGLQGPPGP 1455
Score = 82.0 bits (201), Expect = 2e-15
Identities = 95/274 (34%), Positives = 110/274 (40%), Gaps = 66/274 (24%)
Query: 631 PPAQGKKGLKMPV--PGNPAVPGMPNA-GLPGVG--LPSAGLPGA----GLPS-TGLPGS 680
P G+ GL P GNP +PG P G PG+ + G PG G P +G+PG
Sbjct: 993 PGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQ 1052
Query: 681 AITSAGLPGA-------GMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAF 733
S GLPG G+ S G+P G + G P +PGN G +
Sbjct: 1053 P-GSPGLPGQKGDKGDPGISSIGLPGLPGPK----------GEPGLP-GYPGNPGIKGSV 1100
Query: 734 GPPIPPPGLGGGAFGDARPGMPSV----------------GNSGLPGLGLDVPGFGGGPN 777
G P PGL G +PG+P GN GLPG P GGG
Sbjct: 1101 GDP-GLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGE--PGPVGGGGHP 1157
Query: 778 NLSGPSGFGGGPQNFGNGPGSLG-----GPPGFGS-GPPGLGSAPGHLG--GPPAFGPGP 829
GP G G P G PG G G PGFG+ GPPGL G G G P P
Sbjct: 1158 GQPGPPGEKGKPGQDGI-PGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP 1216
Query: 830 G-PGPGPGPIHIG-----GPPGFASSSGKPGPTV 857
G PGP P G GPPG G PGP +
Sbjct: 1217 GLPGPKGEPGFHGFPGVQGPPG---PPGSPGPAL 1247
Score = 81.3 bits (199), Expect = 4e-15
Identities = 79/220 (35%), Positives = 88/220 (40%), Gaps = 42/220 (19%)
Query: 645 GNPAVPGMPNAGLPGVGLPSA--GLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGG 702
G PG+P G+PGV P GLPG G PG + GLPG P G P G
Sbjct: 964 GEKGEPGLP--GIPGVSGPKGYQGLPG----DPGQPGLS-GQPGLPGPPGPK-GNPGLPG 1015
Query: 703 EEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP-----PGLGGGAFGDARPGMPSV 757
+ G K FPG G GP P PGL G PG+ S+
Sbjct: 1016 QPGLIGPPGLKGTIGD--MGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSI 1073
Query: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPG 817
G GLPG P G G+ G P GS+G P G PGL PG
Sbjct: 1074 GLPGLPG-----------PKGEPGLPGYPGNP----GIKGSVGDP-----GLPGLPGTPG 1113
Query: 818 HLGGP--PAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
G P P F PGP PGP I GPPG G+PGP
Sbjct: 1114 AKGQPGLPGFPGTPGP---PGPKGISGPPGNPGLPGEPGP 1150
Score = 80.9 bits (198), Expect = 5e-15
Identities = 87/254 (34%), Positives = 99/254 (38%), Gaps = 36/254 (14%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSA--GLPGAG--LPSTGLPGSAITSA 685
P G KG + +PG+P PG+ GLPG P GLPG + GL G+ I
Sbjct: 975 PGVSGPKGYQ-GLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGT-IGDM 1032
Query: 686 GLPGA----GMPS-AGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP- 739
G PG G P +G+P G G K PG G G P P
Sbjct: 1033 GFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPG 1092
Query: 740 -PGLGGGAFGDARPGMPSV-GNSGLPGLGLDVPGFGG-----GPNNLSGPSG-------- 784
PG+ G PG+P G G PGL PGF G GP +SGP G
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGL----PGFPGTPGPPGPKGISGPPGNPGLPGEP 1148
Query: 785 --FGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPG-PGPIHIG 841
GGG GP G PG G PG G G P PGP PG G G
Sbjct: 1149 GPVGGGGHPGQPGPPGEKGKPG-QDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG 1207
Query: 842 GPPGFASSSGKPGP 855
G PG + G PGP
Sbjct: 1208 GLPGIPGNPGLPGP 1221
Score = 80.9 bits (198), Expect = 5e-15
Identities = 108/301 (35%), Positives = 116/301 (38%), Gaps = 86/301 (28%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMP-------NAGLPGV----------GLPSA-------G 666
P G KG+ P PGNP +PG P + G PG G+P G
Sbjct: 1127 PGPPGPKGISGP-PGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPG 1185
Query: 667 LPGAGLPST-GLPGSAITSA--GLPGA-GMPSAGIPSAGGEE--HAFLTV-------GSK 713
PG G P GLPG + GLPG G P G+P GE H F V GS
Sbjct: 1186 QPGFGNPGPPGLPGLSGQKGDGGLPGIPGNP--GLPGPKGEPGFHGFPGVQGPPGPPGSP 1243
Query: 714 -EANNGP-----PFNFPGNFGGSNAFGPPIPP--PGLGGGAFGDARPGMPSVGNSGLPGL 765
A GP P PG G GP PP PG GG PG P G GLPGL
Sbjct: 1244 GPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQP--GLPGLPGL 1301
Query: 766 GLDV--PGFGGGP-----NNLSGPSGFGGGPQNFG-----NGPGSLG--GPPGFGSGPPG 811
D PG G P N + G G G P G PGS G G PG GPPG
Sbjct: 1302 KGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGL-IGPPG 1360
Query: 812 LGSAPGHLG---------GPPAFGPGPG----PGPG-----PGPIHIGGPPGFASSSGKP 853
PG G GPP PG PGP PGP GPPG +G P
Sbjct: 1361 PPGLPGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLPGPT---GPPGDPGRNGLP 1417
Query: 854 G 854
G
Sbjct: 1418 G 1418
Score = 76.6 bits (187), Expect = 1e-13
Identities = 83/236 (35%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 644 PGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSA--GLPGA-GMPSA-GIPS 699
PG P +PG+P G PG S G PG G G A + GLPG G P A G P
Sbjct: 493 PGQPGLPGLP--GPPG----SLGFPG----QKGEKGQAGATGPKGLPGIPGAPGAPGFPG 542
Query: 700 AGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PGLGGGAFGDARPGMPSV 757
+ GE LT FPG G G P P PGL G D PG+P
Sbjct: 543 SKGEPGDILT-------------FPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLP-- 587
Query: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGS-GPPGLGSAP 816
G G PG G+ G G P N G G P N G GPPGFG GP G
Sbjct: 588 GPKGEPG-GITFKGERGPPGN----PGLPGLPGNIGPM-----GPPGFGPPGPVGEKGIQ 637
Query: 817 GHLGGPPAFG-PGPGPGPGP-----------------GPIHIGGPPGFASSSGKPG 854
G G P G PGP PG G + + G PG G PG
Sbjct: 638 GVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPG 693
Score = 76.3 bits (186), Expect = 1e-13
Identities = 95/310 (30%), Positives = 115/310 (37%), Gaps = 60/310 (19%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMPNAGLPGV-GLPSA-GLPGAG--LPSTGLPGSAITS 684
P G KG++ P +PG P PG+P G+PG G P G+PG G PGS
Sbjct: 83 PGPPGPKGIRGPPGLPGFPGTPGLP--GMPGHDGAPGPQGIPGCNGTKGERGFPGSP--- 137
Query: 685 AGLPGAGMPSA--GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGP-----PI 737
G PG P GIP GE + + + S G P +PG G GP PI
Sbjct: 138 -GFPGLQGPPGPPGIPGMKGEPGSII-MSSLPGPKGNP-GYPGPPGIQGLPGPTGIPGPI 194
Query: 738 PPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSG------------- 784
PPG G PG+P G G GL P G L GP G
Sbjct: 195 GPPGPPGLMGPPGPPGLP--GPKGNMGLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPID 252
Query: 785 --FGGGPQNFGNGPGSLG--------GPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPG-- 832
F G Q G G GPPG G G PG G P G PG
Sbjct: 253 VEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 833 -----PG-PGPIHIGGPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV 886
PG PG G G +G PGP + + ++I E + G +PG
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI--GLPGLPG-- 368
Query: 887 CLKYNEKGMP 896
+ E+G P
Sbjct: 369 --EKGERGFP 376
Score = 75.1 bits (183), Expect = 3e-13
Identities = 95/286 (33%), Positives = 107/286 (37%), Gaps = 71/286 (24%)
Query: 631 PPAQGKKGLKMP----VPGNPAVPGMP-------NAGLPGVGLPSA----GLPGA-GLPS 674
P QG GL P V G P PG P + G PG+ +P G PGA GLP
Sbjct: 376 PGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLP- 434
Query: 675 TGLPGSA---------ITSAGLPGA-GMPS-------AGIPSAGGEEHAFLTVGSKEANN 717
G PG A I G PG G P G+ G+ F +G+ +
Sbjct: 435 -GPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT-CFNCIGTGISGP 492
Query: 718 ----------GPP--FNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGL 765
GPP FPG G G P GL G PG P G+ G PG
Sbjct: 493 PGQPGLPGLPGPPGSLGFPGQKGEKGQAGAT-GPKGLPGIPGAPGAPGFP--GSKGEPGD 549
Query: 766 GLDVPGFGGGPNNLSGPS-----GFGGGPQNFG--NGPGSLGGPPGFG-------SGPPG 811
L PG G L P G G P G PG G P G G PG
Sbjct: 550 ILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGITFKGERGPPGNPG 609
Query: 812 LGSAPGHLG--GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
L PG++G GPP FGP PGP G + G PG G PGP
Sbjct: 610 LPGLPGNIGPMGPPGFGP-PGPVGEKGIQGVAGNPG---QPGIPGP 651
Score = 72.4 bits (176), Expect = 2e-12
Identities = 81/224 (36%), Positives = 88/224 (39%), Gaps = 42/224 (18%)
Query: 657 LPGVGLPSAGLPGAGLPSTGLPGSAITSAGL-PGAGMPSAGIPSAGGEEHAFLTVGSKEA 715
L GV L +AGL L G P A G PG+ +GI GE E
Sbjct: 3 LRGVSL-AAGLFLLALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERG----FPGLEG 57
Query: 716 NNGPPFNFPGNFGGSNAFGPP----IP-PPGLGGGAFGDARPGMPSVGNSGLPGLGLDVP 770
+ G P FPG G G IP PPG G PG P G GLPG+ P
Sbjct: 58 HPGLP-GFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFP--GTPGLPGM----P 110
Query: 771 GFGGGPNNLSGPSGFGG-----GPQNFGNGPGSLG-----GPPGFGS--GPPG---LGSA 815
G G P GP G G G + F PG G GPPG G PG + S
Sbjct: 111 GHDGAP----GPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSL 166
Query: 816 PGHLG-----GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPG 854
PG G GPP PGP PGPI GPPG G PG
Sbjct: 167 PGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPG 210
Score = 68.9 bits (167), Expect = 2e-11
Identities = 86/249 (34%), Positives = 100/249 (40%), Gaps = 60/249 (24%)
Query: 611 GREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMP----NAGLPGV-GLPSA 665
GR F + E + N +G+KG PG P +PG+P + G PG+ G P
Sbjct: 1261 GRPGFQGLPGPEGPPGLPGNGGIKGEKGN----PGQPGLPGLPGLKGDQGPPGLQGNP-- 1314
Query: 666 GLPGAG--LPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNF 723
G PG GLPG G PG PS G+P + G E +G GPP
Sbjct: 1315 GRPGLNGMKGDPGLPGVP----GFPGMKGPS-GVPGSAGPEGEPGLIGPP----GPP-GL 1364
Query: 724 PGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPS 783
PG G S PPG+ PG P G GLPG GP L GP+
Sbjct: 1365 PGPSGQSIIIKGDAGPPGI---------PGQP--GLKGLPG--------PQGPQGLPGPT 1405
Query: 784 GFGGGPQNFGNGPGSLGGPPGFGS--GPPGLGSAPGHLG--GPPAFGPGPGPGPGPGPIH 839
G G P G L G G G G PGL PG G GPP GP GP
Sbjct: 1406 GPPGDP-----GRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGPP--GPDGLQGP------ 1452
Query: 840 IGGPPGFAS 848
GPPG +S
Sbjct: 1453 -PGPPGTSS 1460
Score = 67.4 bits (163), Expect = 6e-11
Identities = 85/259 (32%), Positives = 96/259 (37%), Gaps = 61/259 (23%)
Query: 626 EIEKNPPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGA----GLPSTGLPGSA 681
++E QG G + P PG P + G P G PG G G G P
Sbjct: 252 DVEFQKGDQGLPGDRGP-PGPPGIRGPP--GPPGGEKGEKGEQGEPGKRGKPGKDGENGQ 308
Query: 682 ITSAGLPG-AGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP---I 737
GLPG G P G P GE+ ++ + GPP GPP I
Sbjct: 309 PGIPGLPGDPGYP--GEPGRDGEK-------GQKGDTGPP-------------GPPGLVI 346
Query: 738 PPPGLG---GGAFGDARPGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFG----GGP 789
P PG G G PG+P G G PG+ GP L GP G GP
Sbjct: 347 PRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQ--------GPPGLPGPPGAAVMGPPGP 398
Query: 790 QNFGNGPGSLG--GPPGFG-SGPPGLGSAPGHLGGPPAFGP-GPGPGPG-----PGPIHI 840
F G G GPPG GPPGL PG G P GP GP P PGP
Sbjct: 399 PGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGP--- 455
Query: 841 GGPPGFASSSGKPGPTVIK 859
GPPG G G +K
Sbjct: 456 PGPPGSPGDKGLQGEQGVK 474
Score = 65.5 bits (158), Expect = 2e-10
Identities = 79/260 (30%), Positives = 94/260 (36%), Gaps = 48/260 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPG--AGLPSTGLPGSAITSAGLP 688
P +G++G + G P +PG P A + G P G PG G PG +I G P
Sbjct: 367 PGEKGERGFP-GIQGPPGLPGPPGAAVMGPPGPP-GFPGERGQKGDEGPPGISIP--GPP 422
Query: 689 GA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PGLGG 744
G G P A G+P G + + GPP GPP P GL G
Sbjct: 423 GLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPP-------------GPPGSPGDKGLQG 469
Query: 745 -----GAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSL 799
G GD G SG PG +PG G P +L P G Q GP L
Sbjct: 470 EQGVKGDKGDTCFNCIGTGISGPPGQP-GLPGLPGPPGSLGFPGQKGEKGQAGATGPKGL 528
Query: 800 GGPPGFGSGP---------------PGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPP 844
G PG P PG+ G LG P A PG PG G P
Sbjct: 529 PGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGA----PGLPGLPGTPGQDGLP 584
Query: 845 GFASSSGKPGPTVIKVQNMP 864
G G+PG K + P
Sbjct: 585 GLPGPKGEPGGITFKGERGP 604
Score = 64.7 bits (156), Expect = 4e-10
Identities = 85/266 (31%), Positives = 98/266 (36%), Gaps = 56/266 (21%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG-AG 691
+G++G + G+P +PG P G PG P G+P P GLPG G
Sbjct: 47 KGERGFP-GLEGHPGLPGFPGPEGPPG---PRGQKGDDGIPGPPGPKGIRGPPGLPGFPG 102
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNGP-PFNFPGNFGGSNAFGPPIPP--PGLGG---- 744
P G+P G + A G N FPG+ G GPP PP PG+ G
Sbjct: 103 TP--GLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGS 160
Query: 745 -------GAFGDARPGMPSV-GNSGLPG-LGLDVPGFGGGPNNLSGPSGFGGGPQNFGN- 794
G G+ PG P G GLPG G+ P GP L GP G G P GN
Sbjct: 161 IIMSSLPGPKGN--PGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNM 218
Query: 795 -----------GPGSLGGPPG---------------FGSGPPGLGSAPGHLGGPPAFGPG 828
G L GPPG F G GL G G P GP
Sbjct: 219 GLNFQGPKGEKGEQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGP- 277
Query: 829 PGPGPGPGPIHIGGPPGFASSSGKPG 854
PGP G G G GKPG
Sbjct: 278 --PGPPGGEKGEKGEQGEPGKRGKPG 301
Score = 39.3 bits (90), Expect = 0.017
Identities = 35/128 (27%), Positives = 42/128 (32%), Gaps = 20/128 (15%)
Query: 160 PNMGASFGSPTFSSTVPSTA--SPMNTVPPPPIPPIPAMPSLPPMPS------------- 204
P G P T+ P PP +P P P +P
Sbjct: 1014 PGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSI 1073
Query: 205 -IPPIPVPPPVPTLPPVPPVPPIPPV---PSVPPMTPLPPMSGMPPLNPPPVAPLPAGMN 260
+P +P P P LP P P I P +P + P G P L P P P G
Sbjct: 1074 GLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPK 1133
Query: 261 G-SGAPMN 267
G SG P N
Sbjct: 1134 GISGPPGN 1141
Score = 38.9 bits (89), Expect = 0.023
Identities = 38/148 (25%), Positives = 47/148 (31%), Gaps = 47/148 (31%)
Query: 175 VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTL----------------- 217
+P P PP +P P P LP MP P P +P
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 218 ---PPVPPVPP-------------------IPPVPSVPPMTPLPPMSGMP-PLNPPPVAP 254
PP PP P P P P + LP +G+P P+ PP
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPG--- 198
Query: 255 LPAGMNGSGAPMNL---NNNLNPMFLGP 279
P G+ G P L N+ F GP
Sbjct: 199 -PPGLMGPPGPPGLPGPKGNMGLNFQGP 225
Score = 38.9 bits (89), Expect = 0.023
Identities = 37/145 (25%), Positives = 49/145 (33%), Gaps = 14/145 (9%)
Query: 160 PNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVP---T 216
P S G P T P + P P +P +P P +P +P P P T
Sbjct: 538 PGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDGLPGLPGPKGEPGGIT 597
Query: 217 LPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMF 276
P P +P +P + P+ PP P P + G N P
Sbjct: 598 FKGERGPPGNPGLPGLP--------GNIGPMGPPGFGP-PGPVGEKGIQGVAGNPGQPGI 648
Query: 277 LGPLNPVNPIQMNSQSSVKPLPINP 301
GP +P Q +Q LP NP
Sbjct: 649 PGPKG--DPGQTITQPGKPGLPGNP 671
Score = 38.9 bits (89), Expect = 0.023
Identities = 39/151 (25%), Positives = 51/151 (33%), Gaps = 31/151 (20%)
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP 218
PP + G P +P P PP +P P P IP P P P P
Sbjct: 826 PPGIPGPIGQPGLHG-IPGEKGD----PGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSP 880
Query: 219 PVPPV-----------------PPIPPVP-SVPPMTPLPPMSGMPPLNPPPVAPLPAGMN 260
+P PP PP P +P + +P + G L P P P G
Sbjct: 881 GLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEK 940
Query: 261 GSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQ 291
GS P GP P++P + S+
Sbjct: 941 GSKG--------EPGLPGPPGPMDPNLLGSK 963
Score = 38.1 bits (87), Expect = 0.038
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 167 GSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPI 226
G+P P T+ P P +P P +P P P P LP +P
Sbjct: 641 GNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Query: 227 PPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAP 265
P +P + P P G P + PP AP G G P
Sbjct: 701 PGIPGIGLPGP-PGPKGFPGIPGPPGAPGTPGRIGLEGP 738
Score = 37.0 bits (84), Expect = 0.086
Identities = 44/176 (25%), Positives = 55/176 (31%), Gaps = 30/176 (17%)
Query: 98 PPANASRSGPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGT 157
PP G P G+ L T+ + P P V
Sbjct: 1004 PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPG------------------ 1045
Query: 158 APPNMGASFGSPTFSSTVPSTASP-MNTVPPPPIPPIPAMPSLPPMPSIPPI------PV 210
P + GSP P ++++ P +P P LP P P I P
Sbjct: 1046 -PSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Query: 211 PPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPP-PVAPLPAGMNGSGAP 265
P +P P P +P P P P P PP NP P P P G G G P
Sbjct: 1105 LPGLPGTPGAKGQPGLPGFPGTPG-PPGPKGISGPPGNPGLPGEPGPVG--GGGHP 1157
Score = 35.8 bits (81), Expect = 0.19
Identities = 43/146 (29%), Positives = 52/146 (35%), Gaps = 25/146 (17%)
Query: 188 PPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP-----PVPPVPPIPPVPSVPPMTPLPPMS 242
P IP I +P P P IP PP P P PP PP P P P LP
Sbjct: 701 PGIPGI-GLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPP 759
Query: 243 GMP-------PLNP--------PPVAPLPAGMNGSGAPM-NLNNNLNPMFLGPLNPVNPI 286
G P L P PP P G++G P ++ N P GP+ P
Sbjct: 760 GPPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPKGDVGPNGQP---GPMGPPGLP 816
Query: 287 QMNSQSSVKPLPINPDDLYVSVHGMP 312
+ Q P I +HG+P
Sbjct: 817 GIGVQGPPGPPGIPGPIGQPGLHGIP 842
Score = 35.0 bits (79), Expect = 0.33
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP 218
PP GA+ P P PP I IP P L P P +P PP P P
Sbjct: 387 PP--GAAVMGPPGPPGFPGERGQKGDEGPPGIS-IPGPPGLDGQPGAPGLP-GPPGPAGP 442
Query: 219 PVPPVPPI-PPVPSVPPMTP 237
+PP I P P PP +P
Sbjct: 443 HIPPSDEICEPGPPGPPGSP 462
Score = 33.1 bits (74), Expect = 1.2
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 21/101 (20%)
Query: 186 PPPPIPPIPAMPSL---------PPMPSIPPIPVPPPVPTLPPVPPVPPI---PPVPSVP 233
P P PP P P+L P +P IP + P LP P P + P +P P
Sbjct: 946 PGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPP 1005
Query: 234 PMTPLPPMSGMPPLNPPPVA---------PLPAGMNGSGAP 265
P + G P L PP P P G+ G P
Sbjct: 1006 GPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGP 1046
Score = 33.1 bits (74), Expect = 1.2
Identities = 27/88 (30%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 187 PPPIPPIPAMPS---LPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSG 243
PP +P + LP +P P +P P P P V PP P P L G
Sbjct: 1194 PPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQG-PPGPPGSPGPALEGPKG 1252
Query: 244 MPPLNPPPVAPLPAGMNGSGAPMNLNNN 271
P PP P G+ G P L N
Sbjct: 1253 NPGPQGPPGRPGFQGLPGPEGPPGLPGN 1280
Score = 31.2 bits (69), Expect = 4.7
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 194 PAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVA 253
P P LP +P + PP + P P + + P +P + P M G
Sbjct: 1290 PGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKG---------- 1339
Query: 254 PLPAGMNGSGAPMNLNNNLNPMFLGPLNP 282
P+G+ GS P P +GP P
Sbjct: 1340 --PSGVPGSAGPEG-----EPGLIGPPGP 1361
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 95.1 bits (235), Expect = 3e-19
Identities = 82/229 (35%), Positives = 103/229 (44%), Gaps = 47/229 (20%)
Query: 649 VPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFL 708
VPG P G VG+P AG+PG G+P G+P + AG+PGA +P P A +
Sbjct: 323 VPGGPGFGPGVVGVPGAGVPGVGVPGAGIP--VVPGAGIPGAAVPGVVSPEAAAK----- 375
Query: 709 TVGSKEANNGPPFNFPG-NFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGL 767
+K A G PG GG IP G+G G F PG VG G+PG+
Sbjct: 376 -AAAKAAKYGAR---PGVGVGG-------IPTYGVGAGGF----PGF-GVGVGGIPGVA- 418
Query: 768 DVPGFGGGPNNLSGPSGFGGGPQ----------NFGNGPGSLGGPPGFGSGP-----PGL 812
VPG GG P + G G G P+ +G PG +G PG G P PG+
Sbjct: 419 GVPGVGGVP-GVGGVPGVGISPEAQAAAAAKAAKYGLVPG-VGVAPGVGVAPGVGVAPGV 476
Query: 813 GSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQ 861
G APG +G P G PG G PG GP G A+++ K Q
Sbjct: 477 GLAPG-VGVAPGVGVAPGVGVAPGI----GPGGVAAAAKSAAKVAAKAQ 520
Score = 70.1 bits (170), Expect = 9e-12
Identities = 80/271 (29%), Positives = 107/271 (39%), Gaps = 55/271 (20%)
Query: 632 PAQGKKGLKMPVPGNPAVPG--MPNAGLPGVGLPSA--------------------GLPG 669
P G G+ +P G P VPG +P A +PGV P A G+P
Sbjct: 337 PGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPT 396
Query: 670 AGLPSTGLPGSAITSAGLPG-AGMPSAG-IPSAGGEEHAFLTVGSKEANNGPPFNFPGNF 727
G+ + G PG + G+PG AG+P G +P GG ++ ++ A +
Sbjct: 397 YGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAAAKAAKYGLVP 456
Query: 728 GGSNAFGPPIPPPGLGGGAFGDARPGM---PSVGNSGLPGLGLDVPGFGGG--------- 775
G A G + P G+G PG+ P VG + PG+G+ PG G G
Sbjct: 457 GVGVAPGVGVAP-GVGVAPGVGLAPGVGVAPGVGVA--PGVGV-APGIGPGGVAAAAKSA 512
Query: 776 -----PNNLSGPSGFGGGPQNFGNGPGSLG-----GPPGFG--SGPPGLGSAPGHLGGPP 823
L +G G G G G G G G PG G +G PG G+ PG L
Sbjct: 513 AKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAK 572
Query: 824 AFGPG---PGPGPGPGPIHIGGPPGFASSSG 851
A G PG G G + G PG +G
Sbjct: 573 AAKYGAAVPGVLGGLGALGGVGIPGGVVGAG 603
Score = 67.0 bits (162), Expect = 8e-11
Identities = 70/223 (31%), Positives = 88/223 (39%), Gaps = 51/223 (22%)
Query: 638 GLKMPVPGNPAVPG-MPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGL----PGAGM 692
G +P PG PG +P GLPGV P LPGA P G+ T AG+ PG G
Sbjct: 126 GAVVPQPGAGVKPGKVPGVGLPGV-YPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 184
Query: 693 PSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARP 752
AGIP G FGG P PG+ G + P
Sbjct: 185 AFAGIPGVGP------------------------FGG--------PQPGVPLG-YPIKAP 211
Query: 753 GMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPG-----FGS 807
+P G GLP +P +G GP ++G +G G P G GP + FG+
Sbjct: 212 KLP--GGYGLPYTTGKLP-YGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGA 268
Query: 808 GPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSS 850
G G+ G G P PG PG G I G P A+++
Sbjct: 269 GAAGVLPGVGGAGVPGV----PGAIPGIGGIAGVGTPAAAAAA 307
Score = 58.9 bits (141), Expect = 2e-08
Identities = 61/184 (33%), Positives = 74/184 (40%), Gaps = 25/184 (13%)
Query: 665 AGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFP 724
AG+PG G+ G+PG + AG+PG G+ AG+P G A +K A G P
Sbjct: 529 AGIPGLGV-GVGVPGLGV-GAGVPGLGV-GAGVPGFGAVPGAL--AAAKAAKYGAAV--P 581
Query: 725 GNFGGSNAFGPPIPPPGLGGG------AFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNN 778
G GG A G P G+ G A A G G GLG G G G
Sbjct: 582 GVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLG----GLGVGGLG 637
Query: 779 LSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPI 838
+ G G GG P P + +G+ GLG G G P G PG G PI
Sbjct: 638 VPGVGGLGGIP------PAAAAKAAKYGAA--GLGGVLGGAGQFPLGGVAARPGFGLSPI 689
Query: 839 HIGG 842
GG
Sbjct: 690 FPGG 693
Score = 57.8 bits (138), Expect = 5e-08
Identities = 73/243 (30%), Positives = 90/243 (37%), Gaps = 46/243 (18%)
Query: 635 GKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPS 694
G K LK PVPG G+ AGL G GL P P +PG +A A
Sbjct: 59 GGKPLK-PVPG-----GLAGAGL-GAGL--GAFPAVTFPGALVPGGVADAAAAYKAAKAG 109
Query: 695 AGIPSAGGEEHAFLTVGSKEANNG--------PPFNFPGNFGGSNAFGPPIPP----PGL 742
AG+ G ++ G+ G P PG + G G P PG+
Sbjct: 110 AGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGV 169
Query: 743 GGGAFGDARPGMPSVGN--SGLPGLGLDVPGFGGGPNNLSG--------PSGFG----GG 788
GA +P P VG +G+PG+G P G P G P G+G G
Sbjct: 170 PTGA--GVKPKAPGVGGAFAGIPGVG---PFGGPQPGVPLGYPIKAPKLPGGYGLPYTTG 224
Query: 789 PQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPA-----FGPG-PGPGPGPGPIHIGG 842
+G GPG + G G P G G P A FG G G PG G + G
Sbjct: 225 KLPYGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPG 284
Query: 843 PPG 845
PG
Sbjct: 285 VPG 287
Score = 57.0 bits (136), Expect = 8e-08
Identities = 82/260 (31%), Positives = 103/260 (39%), Gaps = 41/260 (15%)
Query: 646 NPAVPGMPNAGLPGVGLPSAGL-PGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEE 704
+P+ PG +PG G+P PGAGL + G G A+ G P +P GG
Sbjct: 22 HPSRPGGVPGAIPG-GVPGGVFYPGAGLGALG--GGALGPGGKPLKPVP-------GGLA 71
Query: 705 HAFLTVGSKEANNGPPFNFPGNF-GGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGL- 762
A L G P FPG G A G G G+P VG G+
Sbjct: 72 GAGLGAG---LGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLG----GVPGVGGLGVS 124
Query: 763 PGLGLDVPGFGGGPNNLSG---PSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHL 819
G + PG G P + G P + GG PG +G PG +G APG +
Sbjct: 125 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPG-VGVLPGVPTGAGVKPKAPG-V 182
Query: 820 GGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGK-PGPTVIKVQNMPFTVSIDEILDFFYG 878
GG A PG GP GP P G P G+ + K PG +P+T L + YG
Sbjct: 183 GGAFAGIPGVGPFGGPQP---GVPLGYPIKAPKLPGG-----YGLPYTTG---KLPYGYG 231
Query: 879 YQVIPGSVCLKYNEKGMPTG 898
PG V + G PTG
Sbjct: 232 ----PGGVAGAAGKAGYPTG 247
Score = 35.4 bits (80), Expect = 0.25
Identities = 38/117 (32%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 648 AVPGMPNA--GLPGVGLPSAGLPGAGLPSTGLPGSA---------ITSAGLPGAGMPSAG 696
AVPG+ L GVG+P G+ GAG + A + +AGL G G+ G
Sbjct: 579 AVPGVLGGLGALGGVGIPG-GVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLG 637
Query: 697 IPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPG 753
+P GG +K A G G GG+ F LGG A ARPG
Sbjct: 638 VPGVGGLGGIPPAAAAKAAKYGAA-GLGGVLGGAGQF-------PLGGVA---ARPG 683
>gi|126352322 elastin isoform c precursor [Homo sapiens]
Length = 692
Score = 95.1 bits (235), Expect = 3e-19
Identities = 82/229 (35%), Positives = 103/229 (44%), Gaps = 47/229 (20%)
Query: 649 VPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFL 708
VPG P G VG+P AG+PG G+P G+P + AG+PGA +P P A +
Sbjct: 328 VPGGPGFGPGVVGVPGAGVPGVGVPGAGIP--VVPGAGIPGAAVPGVVSPEAAAK----- 380
Query: 709 TVGSKEANNGPPFNFPG-NFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGL 767
+K A G PG GG IP G+G G F PG VG G+PG+
Sbjct: 381 -AAAKAAKYGAR---PGVGVGG-------IPTYGVGAGGF----PGF-GVGVGGIPGVA- 423
Query: 768 DVPGFGGGPNNLSGPSGFGGGPQ----------NFGNGPGSLGGPPGFGSGP-----PGL 812
VPG GG P + G G G P+ +G PG +G PG G P PG+
Sbjct: 424 GVPGVGGVP-GVGGVPGVGISPEAQAAAAAKAAKYGLVPG-VGVAPGVGVAPGVGVAPGV 481
Query: 813 GSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQ 861
G APG +G P G PG G PG GP G A+++ K Q
Sbjct: 482 GLAPG-VGVAPGVGVAPGVGVAPGI----GPGGVAAAAKSAAKVAAKAQ 525
Score = 70.1 bits (170), Expect = 9e-12
Identities = 80/271 (29%), Positives = 107/271 (39%), Gaps = 55/271 (20%)
Query: 632 PAQGKKGLKMPVPGNPAVPG--MPNAGLPGVGLPSA--------------------GLPG 669
P G G+ +P G P VPG +P A +PGV P A G+P
Sbjct: 342 PGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPT 401
Query: 670 AGLPSTGLPGSAITSAGLPG-AGMPSAG-IPSAGGEEHAFLTVGSKEANNGPPFNFPGNF 727
G+ + G PG + G+PG AG+P G +P GG ++ ++ A +
Sbjct: 402 YGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAAAKAAKYGLVP 461
Query: 728 GGSNAFGPPIPPPGLGGGAFGDARPGM---PSVGNSGLPGLGLDVPGFGGG--------- 775
G A G + P G+G PG+ P VG + PG+G+ PG G G
Sbjct: 462 GVGVAPGVGVAP-GVGVAPGVGLAPGVGVAPGVGVA--PGVGV-APGIGPGGVAAAAKSA 517
Query: 776 -----PNNLSGPSGFGGGPQNFGNGPGSLG-----GPPGFG--SGPPGLGSAPGHLGGPP 823
L +G G G G G G G G PG G +G PG G+ PG L
Sbjct: 518 AKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAK 577
Query: 824 AFGPG---PGPGPGPGPIHIGGPPGFASSSG 851
A G PG G G + G PG +G
Sbjct: 578 AAKYGAAVPGVLGGLGALGGVGIPGGVVGAG 608
Score = 67.0 bits (162), Expect = 8e-11
Identities = 67/213 (31%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 645 GNPAVPGMPNAGLP--GVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGG 702
G A P +P A +P G G+ +PG GLP PG + A PG G+ G+P+ G
Sbjct: 122 GVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGV-YPGGVLPGARFPGVGV-LPGVPTGAG 179
Query: 703 EEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGL 762
+ VG A G P G FG P P LG + P +P G GL
Sbjct: 180 VKPKAPGVGGAFA--GIP--------GVGPFGGPQPGVPLG---YPIKAPKLP--GGYGL 224
Query: 763 PGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPG-----FGSGPPGLGSAPG 817
P +P +G GP ++G +G G P G GP + FG+G G+ G
Sbjct: 225 PYTTGKLP-YGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVG 283
Query: 818 HLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSS 850
G P PG PG G I G P A+++
Sbjct: 284 GAGVPGV----PGAIPGIGGIAGVGTPAAAAAA 312
Score = 58.2 bits (139), Expect = 4e-08
Identities = 82/262 (31%), Positives = 109/262 (41%), Gaps = 40/262 (15%)
Query: 646 NPAVPGMPNAGLPGVGLPSAGL-PGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEE 704
+P+ PG +PG G+P PGAGL + G G A+ G P +P G+ AG
Sbjct: 22 HPSRPGGVPGAIPG-GVPGGVFYPGAGLGALG--GGALGPGGKPLKPVP-GGLAGAG--- 74
Query: 705 HAFLTVGSKEANNGPPFNFPGNFG-GSNAFGPPIPPPGLGGGAFGDARPGMPSVGNS--- 760
+G+ A P PG + A+ GLGG PG+ +G S
Sbjct: 75 -LGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGG------VPGVGGLGVSAAP 127
Query: 761 GLPGLGLDVPGFGGGPNNLSG---PSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPG 817
+PG + PG G P + G P + GG PG +G PG +G APG
Sbjct: 128 SVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPG-VGVLPGVPTGAGVKPKAPG 186
Query: 818 HLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGK-PGPTVIKVQNMPFTVSIDEILDFF 876
+GG A PG GP GP P G P G+ + K PG +P+T L +
Sbjct: 187 -VGGAFAGIPGVGPFGGPQP---GVPLGYPIKAPKLPGG-----YGLPYTTG---KLPYG 234
Query: 877 YGYQVIPGSVCLKYNEKGMPTG 898
YG PG V + G PTG
Sbjct: 235 YG----PGGVAGAAGKAGYPTG 252
Score = 47.4 bits (111), Expect = 6e-05
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 46/177 (25%)
Query: 665 AGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFP 724
AG+PG G+ G+PG + AG+PG G+ AG+P G A +K A G P
Sbjct: 534 AGIPGLGV-GVGVPGLGV-GAGVPGLGV-GAGVPGFGAVPGAL--AAAKAAKYGAAV--P 586
Query: 725 GNFGGSNAFGPPIPPPGLGG-------------------GAFGDARPGMPSVGNSGLPGL 765
G GG A G P G+ G G G A G VG G+PG+
Sbjct: 587 GVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGV 646
Query: 766 GLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGP--PG---LGSAPG 817
G G GG P + + G + PGFG P PG LG A G
Sbjct: 647 G----GLGGIPPAAAAKAAKYG-----------VAARPGFGLSPIFPGGACLGKACG 688
Score = 33.1 bits (74), Expect = 1.2
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 648 AVPGMPNA--GLPGVGLPSAGLPGAGLPSTGLPGSA---------ITSAGLPGAGMPSAG 696
AVPG+ L GVG+P G+ GAG + A + +AGL G G+ G
Sbjct: 584 AVPGVLGGLGALGGVGIPG-GVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLG 642
Query: 697 IPSAGGEEHAFLTVGSKEANNG----PPFNFPGNFGGSNAFG 734
+P GG +K A G P F F G G
Sbjct: 643 VPGVGGLGGIPPAAAAKAAKYGVAARPGFGLSPIFPGGACLG 684
>gi|126352700 elastin isoform b precursor [Homo sapiens]
Length = 677
Score = 95.1 bits (235), Expect = 3e-19
Identities = 82/229 (35%), Positives = 103/229 (44%), Gaps = 47/229 (20%)
Query: 649 VPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFL 708
VPG P G VG+P AG+PG G+P G+P + AG+PGA +P P A +
Sbjct: 313 VPGGPGFGPGVVGVPGAGVPGVGVPGAGIP--VVPGAGIPGAAVPGVVSPEAAAK----- 365
Query: 709 TVGSKEANNGPPFNFPG-NFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGL 767
+K A G PG GG IP G+G G F PG VG G+PG+
Sbjct: 366 -AAAKAAKYGAR---PGVGVGG-------IPTYGVGAGGF----PGF-GVGVGGIPGVA- 408
Query: 768 DVPGFGGGPNNLSGPSGFGGGPQ----------NFGNGPGSLGGPPGFGSGP-----PGL 812
VPG GG P + G G G P+ +G PG +G PG G P PG+
Sbjct: 409 GVPGVGGVP-GVGGVPGVGISPEAQAAAAAKAAKYGLVPG-VGVAPGVGVAPGVGVAPGV 466
Query: 813 GSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQ 861
G APG +G P G PG G PG GP G A+++ K Q
Sbjct: 467 GLAPG-VGVAPGVGVAPGVGVAPGI----GPGGVAAAAKSAAKVAAKAQ 510
Score = 70.1 bits (170), Expect = 9e-12
Identities = 80/271 (29%), Positives = 107/271 (39%), Gaps = 55/271 (20%)
Query: 632 PAQGKKGLKMPVPGNPAVPG--MPNAGLPGVGLPSA--------------------GLPG 669
P G G+ +P G P VPG +P A +PGV P A G+P
Sbjct: 327 PGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPT 386
Query: 670 AGLPSTGLPGSAITSAGLPG-AGMPSAG-IPSAGGEEHAFLTVGSKEANNGPPFNFPGNF 727
G+ + G PG + G+PG AG+P G +P GG ++ ++ A +
Sbjct: 387 YGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAAAKAAKYGLVP 446
Query: 728 GGSNAFGPPIPPPGLGGGAFGDARPGM---PSVGNSGLPGLGLDVPGFGGG--------- 775
G A G + P G+G PG+ P VG + PG+G+ PG G G
Sbjct: 447 GVGVAPGVGVAP-GVGVAPGVGLAPGVGVAPGVGVA--PGVGV-APGIGPGGVAAAAKSA 502
Query: 776 -----PNNLSGPSGFGGGPQNFGNGPGSLG-----GPPGFG--SGPPGLGSAPGHLGGPP 823
L +G G G G G G G G PG G +G PG G+ PG L
Sbjct: 503 AKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGLGVGAGVPGFGAVPGALAAAK 562
Query: 824 AFGPG---PGPGPGPGPIHIGGPPGFASSSG 851
A G PG G G + G PG +G
Sbjct: 563 AAKYGAAVPGVLGGLGALGGVGIPGGVVGAG 593
Score = 67.0 bits (162), Expect = 8e-11
Identities = 70/223 (31%), Positives = 88/223 (39%), Gaps = 51/223 (22%)
Query: 638 GLKMPVPGNPAVPG-MPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGL----PGAGM 692
G +P PG PG +P GLPGV P LPGA P G+ T AG+ PG G
Sbjct: 116 GAVVPQPGAGVKPGKVPGVGLPGV-YPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 174
Query: 693 PSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARP 752
AGIP G FGG P PG+ G + P
Sbjct: 175 AFAGIPGVGP------------------------FGG--------PQPGVPLG-YPIKAP 201
Query: 753 GMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPG-----FGS 807
+P G GLP +P +G GP ++G +G G P G GP + FG+
Sbjct: 202 KLP--GGYGLPYTTGKLP-YGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGA 258
Query: 808 GPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSS 850
G G+ G G P PG PG G I G P A+++
Sbjct: 259 GAAGVLPGVGGAGVPGV----PGAIPGIGGIAGVGTPAAAAAA 297
Score = 58.2 bits (139), Expect = 4e-08
Identities = 73/247 (29%), Positives = 91/247 (36%), Gaps = 46/247 (18%)
Query: 632 PAQGKKGLKM-PVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGA 690
PA G G + PVPG G+ AGL G GL P P +PG +A A
Sbjct: 44 PALGPGGKPLKPVPG-----GLAGAGL-GAGL--GAFPAVTFPGALVPGGVADAAAAYKA 95
Query: 691 GMPSAGIPSAGGEEHAFLTVGSKEANNG--------PPFNFPGNFGGSNAFGPPIPP--- 739
AG+ G ++ G+ G P PG + G G P
Sbjct: 96 AKAGAGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGV 155
Query: 740 -PGLGGGAFGDARPGMPSVGN--SGLPGLGLDVPGFGGGPNNLSG--------PSGFG-- 786
PG+ GA +P P VG +G+PG+G P G P G P G+G
Sbjct: 156 LPGVPTGA--GVKPKAPGVGGAFAGIPGVG---PFGGPQPGVPLGYPIKAPKLPGGYGLP 210
Query: 787 --GGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPA-----FGPG-PGPGPGPGPI 838
G +G GPG + G G P G G P A FG G G PG G
Sbjct: 211 YTTGKLPYGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGA 270
Query: 839 HIGGPPG 845
+ G PG
Sbjct: 271 GVPGVPG 277
Score = 47.4 bits (111), Expect = 6e-05
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 46/177 (25%)
Query: 665 AGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFP 724
AG+PG G+ G+PG + AG+PG G+ AG+P G A +K A G P
Sbjct: 519 AGIPGLGV-GVGVPGLGV-GAGVPGLGV-GAGVPGFGAVPGAL--AAAKAAKYGAAV--P 571
Query: 725 GNFGGSNAFGPPIPPPGLGG-------------------GAFGDARPGMPSVGNSGLPGL 765
G GG A G P G+ G G G A G VG G+PG+
Sbjct: 572 GVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGV 631
Query: 766 GLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGP--PG---LGSAPG 817
G G GG P + + G + PGFG P PG LG A G
Sbjct: 632 G----GLGGIPPAAAAKAAKYG-----------VAARPGFGLSPIFPGGACLGKACG 673
Score = 34.3 bits (77), Expect = 0.55
Identities = 42/131 (32%), Positives = 47/131 (35%), Gaps = 24/131 (18%)
Query: 735 PPIPPPGLGGGAFGDA-----RPGMPSVGNSGLPGLGLDVPGFGGGPN----NLSGPSGF 785
P P G+ GG F A +P P G GL G GL G G P P G
Sbjct: 30 PGAIPGGVPGGVFYPALGPGGKPLKPVPG--GLAGAGLGA-GLGAFPAVTFPGALVPGGV 86
Query: 786 GGGPQNF--GNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGP 843
+ LGG PG G GLG + G A P PG G PG + G
Sbjct: 87 ADAAAAYKAAKAGAGLGGVPGVG----GLGVSAG------AVVPQPGAGVKPGKVPGVGL 136
Query: 844 PGFASSSGKPG 854
PG PG
Sbjct: 137 PGVYPGGVLPG 147
Score = 33.1 bits (74), Expect = 1.2
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 648 AVPGMPNA--GLPGVGLPSAGLPGAGLPSTGLPGSA---------ITSAGLPGAGMPSAG 696
AVPG+ L GVG+P G+ GAG + A + +AGL G G+ G
Sbjct: 569 AVPGVLGGLGALGGVGIPG-GVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLG 627
Query: 697 IPSAGGEEHAFLTVGSKEANNG----PPFNFPGNFGGSNAFG 734
+P GG +K A G P F F G G
Sbjct: 628 VPGVGGLGGIPPAAAAKAAKYGVAARPGFGLSPIFPGGACLG 669
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 95.1 bits (235), Expect = 3e-19
Identities = 103/285 (36%), Positives = 120/285 (42%), Gaps = 66/285 (23%)
Query: 631 PPAQGKKGLK-----MPVPGNPAVPGMP-NAGLPGV-GLPS----AGLPGAGLP------ 673
P G GLK + PG+P +PG + GLPG+ G+P AGLPG P
Sbjct: 1090 PGMPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPTGPAGQ 1149
Query: 674 -----STGLPGSAITSA--GLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGN 726
S G+PGSA GLPG G P G P A G++ + VG P PG+
Sbjct: 1150 KGEPGSDGIPGSAGEKGEPGLPGRGFP--GFPGAKGDKGSKGEVGFPGLAGSP--GIPGS 1205
Query: 727 FGGSNAFGPPIPP--PGLGG-------GAFGD----ARPGMPSV-GNSGLPGL-GLDV-- 769
G GPP P PGL G G GD +PG+P + G G PGL G+D
Sbjct: 1206 KGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGLPGIDGVK 1265
Query: 770 -----PGFGGGPNNLSGPSGFGG--GPQNFGNGPGSLG-----GPPGFGS-----GPPGL 812
PG+ G P + GP G G G G PG G GPPG G PGL
Sbjct: 1266 GDKGNPGWPGAPG-VPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPKGLPGL 1324
Query: 813 GSAPGHLG--GPPAFGPGPGPGPGPGPIHI-GGPPGFASSSGKPG 854
G G G P PGP PGP I G PG G PG
Sbjct: 1325 QGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPG 1369
Score = 90.9 bits (224), Expect = 5e-18
Identities = 92/234 (39%), Positives = 101/234 (43%), Gaps = 32/234 (13%)
Query: 635 GKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPGA-GLP-STGLPGSAITSAGLPGA- 690
G KG + PG P PG+P G PG +P G PGA GLP S G PG G PG
Sbjct: 615 GDKG-QAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQ-GDRGFPGTP 672
Query: 691 GMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP--IPPPGLGGGAFG 748
G P G+P G K A P FPG G G P + PPG G
Sbjct: 673 GRP--GLP------------GEKGAVGQPGIGFPGPPGPKGVDGLPGDMGPPGTPGRPGF 718
Query: 749 DARPGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGS 807
+ PG P V G G PG+GL PG G P G G G P G+ G G P G+
Sbjct: 719 NGLPGNPGVQGQKGEPGVGL--PGLKGLP----GLPGIPGTPGEKGS-IGVPGVPGEHGA 771
Query: 808 -GPPGLGSAPGHLGGPPAFGPGPGPG-PGPGPIHIGGPPGFASSSGKPGPTVIK 859
GPPGL G G P G PG PG GP GPPG G GP IK
Sbjct: 772 IGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIK 825
Score = 90.9 bits (224), Expect = 5e-18
Identities = 88/238 (36%), Positives = 103/238 (43%), Gaps = 27/238 (11%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSA--GLPGA-GLPSTGLPGSAITSAGL 687
P +G+ G +P+PG P G+P G PG P G PG G P GLPG + G
Sbjct: 632 PGPKGEPGKIVPLPGPPGAEGLP--GSPGFPGPQGDRGFPGTPGRP--GLPGEK-GAVGQ 686
Query: 688 PGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFN-FPGNFGGSNAFGPP-IPPPGLGGG 745
PG G P G P G + +G P FN PGN G G P + PGL G
Sbjct: 687 PGIGFP--GPPGPKGVDGLPGDMGPPGTPGRPGFNGLPGNPGVQGQKGEPGVGLPGLKGL 744
Query: 746 AFGDARPGMPSV-GNSGLPGLGLDVPGFGG--GPNNLSGPSGFGGGPQNFGNGPGSLGGP 802
PG P G+ G+PG VPG G GP L G G G P PGS+G P
Sbjct: 745 PGLPGIPGTPGEKGSIGVPG----VPGEHGAIGPPGLQGIRGEPGPP----GLPGSVGSP 796
Query: 803 PGFGSGPPGLGSAPGHLGGPPAFGP----GPGPGPGPGPIHIGGPPGFASSSGKPGPT 856
G GPPG PG G P GP G PG + + GP G + G PG T
Sbjct: 797 GVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGIT 854
Score = 90.5 bits (223), Expect = 7e-18
Identities = 93/279 (33%), Positives = 108/279 (38%), Gaps = 65/279 (23%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPN----AGLPGVGLPSA-------GLPG-AGLPST--- 675
P QG +G PG P PG+P G PG+G P GLPG G P T
Sbjct: 660 PGPQGDRGF----PGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDMGPPGTPGR 715
Query: 676 ----GLPGSAITSA--GLPGAGMP-------------------SAGIPSAGGEEHAFLTV 710
GLPG+ G PG G+P S G+P GE A
Sbjct: 716 PGFNGLPGNPGVQGQKGEPGVGLPGLKGLPGLPGIPGTPGEKGSIGVPGVPGEHGAIGPP 775
Query: 711 GSKEANNGP-PFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGM---PSV-GNSGLPGL 765
G + P P PG+ G P I PPG G G PG+ P + G G PG
Sbjct: 776 GLQGIRGEPGPPGLPGSVGSPGV--PGIGPPGARGPPGGQGPPGLSGPPGIKGEKGFPGF 833
Query: 766 -GLDVPGFGG--GPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLG-- 820
GLD+PG G G L G +G G P PG G P G PG + G +G
Sbjct: 834 PGLDMPGPKGDKGAQGLPGITGQSGLP----GLPGQQGAP-----GIPGFPGSKGEMGVM 884
Query: 821 GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIK 859
G P PGP PG G GF SSG G +K
Sbjct: 885 GTPGQPGSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLK 923
Score = 87.0 bits (214), Expect = 7e-17
Identities = 87/249 (34%), Positives = 102/249 (40%), Gaps = 37/249 (14%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSA----GLPGAGLP--STGLPGSAITS 684
P +G G+ PG P +PG P + G+GLP G+PG P S GLPG
Sbjct: 989 PGPKGDPGIS-GTPGAPGLPG-PKGSVGGMGLPGTPGEKGVPGIPGPQGSPGLPGDKGAK 1046
Query: 685 AGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PGL 742
AG P GIP GE+ G + P PG G + G P P PGL
Sbjct: 1047 GEKGQAGPPGIGIPGLRGEK------GDQGIAGFP--GSPGEKGEKGSIGIPGMPGSPGL 1098
Query: 743 GGGAFGDARPGMPSV----GNSGLPGLGLDVPGFGG-----GPNNLSGPSGFGGGPQNFG 793
G PG P + G+ GLPGL +PG G G +GP+G G P + G
Sbjct: 1099 KGSPGSVGYPGSPGLPGEKGDKGLPGLD-GIPGVKGEAGLPGTPGPTGPAGQKGEPGSDG 1157
Query: 794 NGPGSLG--GPPGF-GSGPPGLGSAPGHLG-----GPPAFGPGPGPGPGPGPIHIGGPPG 845
PGS G G PG G G PG A G G G P PG G GPPG
Sbjct: 1158 I-PGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPG 1216
Query: 846 FASSSGKPG 854
G PG
Sbjct: 1217 PQGQPGLPG 1225
Score = 79.3 bits (194), Expect = 2e-14
Identities = 91/265 (34%), Positives = 110/265 (41%), Gaps = 44/265 (16%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA-GLPG-VGLPSA-GLPGAGLPSTGLPGSAITSAGL 687
P A+G +GL PG V G+P G PG +G P A G PG L G G
Sbjct: 494 PGAKGDRGL----PGRDGVAGVPGPQGTPGLIGQPGAKGEPGEFYFDLRLKGDK-GDPGF 548
Query: 688 PG-------AGMPSA-GIPSAGGEEHAFLTVGSKEANNGPP--FNFPGNFGGSNAFGPP- 736
PG AG P G P G + + +VG K GPP FPG+ G + GPP
Sbjct: 549 PGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVGLK-GERGPPGGVGFPGSRGDTGPPGPPG 607
Query: 737 ------IPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGG--G 788
I G G G PG+P G G PG + +PG G L G GF G G
Sbjct: 608 YGPAGPIGDKGQAGFPGGPGSPGLP--GPKGEPGKIVPLPG-PPGAEGLPGSPGFPGPQG 664
Query: 789 PQNFGNGPGSLG--------GPPGFG-SGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIH 839
+ F PG G G PG G GPPG G G P GP PG PG
Sbjct: 665 DRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPG---PKGVDGLPGDMGP-PGTPGRPGFNG 720
Query: 840 IGGPPGFASSSGKPGPTVIKVQNMP 864
+ G PG G+PG + ++ +P
Sbjct: 721 LPGNPGVQGQKGEPGVGLPGLKGLP 745
Score = 74.3 bits (181), Expect = 5e-13
Identities = 90/270 (33%), Positives = 103/270 (38%), Gaps = 50/270 (18%)
Query: 631 PPAQGKKGLKMP-----VPGNPAVPGMPNA-GLPGVGLPSAGLPGAG--------LPSTG 676
P G KG + P PGNP +PG+P G PG G+PG L G
Sbjct: 84 PGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPG----PPGIPGCNGTKGERGPLGPPG 139
Query: 677 LPGSAITSAGLPGA-GMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFG--GSNAF 733
LPG A G PG G+P G+ GE + + G P PG G G
Sbjct: 140 LPGFA----GNPGPPGLP--GMKGDPGEILGHVPGMLLKGERGFP-GIPGTPGPPGLPGL 192
Query: 734 GPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFG 793
P+ PPG G PG P G G GL P G +SGP G G Q
Sbjct: 193 QGPVGPPGFTGPPGPPGPPGPP--GEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQE 250
Query: 794 NGP----GSLG--GPPGFGSGPPGLGSA-----PGHLGGPPAFG-------PG-PGPGPG 834
G G G G PGF G PG+G PG G P G PG PG
Sbjct: 251 KGDFATKGEKGQKGEPGF-QGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGY 309
Query: 835 PGPIHIGGPPGFASSSGKPGPTVIKVQNMP 864
PG I GP G +G PGP I + P
Sbjct: 310 PGLIGRQGPQGEKGEAGPPGPPGIVIGTGP 339
Score = 71.2 bits (173), Expect = 4e-12
Identities = 96/291 (32%), Positives = 113/291 (38%), Gaps = 82/291 (28%)
Query: 635 GKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSA--GLPG----AGLPSTGLPGSAITSAGL 687
G KG K G +PG+ G PG+ P G PG G P GLPG+ T G
Sbjct: 43 GVKGQK----GERGLPGLQGVIGFPGMQGPEGPQGPPGQKGDTGEP--GLPGTKGTR-GP 95
Query: 688 PGA-GMP-SAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGG 745
PGA G P + G+P G++ GPP PG G GP + PPGL G
Sbjct: 96 PGASGYPGNPGLPGIPGQD----------GPPGPP-GIPGCNGTKGERGP-LGPPGLPGF 143
Query: 746 AFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSG--PSGFGGGPQNFGNGPGSLGGPP 803
A GN G PGL PG G P + G P G + F PG G P
Sbjct: 144 A-----------GNPGPPGL----PGMKGDPGEILGHVPGMLLKGERGF---PGIPGTP- 184
Query: 804 GFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGP--------IHIGGPPGFASSSGKPGP 855
GPPGL G + GPP F PGP PGP + GP G G GP
Sbjct: 185 ----GPPGLPGLQGPV-GPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGP 239
Query: 856 TVIKVQNMPFTVSIDEILDFFY----------GYQVIPGSVCLKYNEKGMP 896
+P + E DF G+Q +PG EKG P
Sbjct: 240 -----PGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPG-----VGEKGEP 280
Score = 70.1 bits (170), Expect = 9e-12
Identities = 99/295 (33%), Positives = 107/295 (36%), Gaps = 82/295 (27%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPG-VGLPSAGLPGA-------GLPSTGLPGSAI 682
P +G+ G K PG P PG P +PG G P G PG G P T LPG +
Sbjct: 352 PGPRGEPGPK-GFPGLPGQPGPPGLPVPGQAGAP--GFPGERGEKGDRGFPGTSLPGPSG 408
Query: 683 TSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFN-----------FPGNFG--- 728
GLPG S G P G T G E GPP + F G G
Sbjct: 409 RD-GLPGPP-GSPGPPGQPG-----YTNGIVECQPGPPGDQGPPGIPGQPGFIGEIGEKG 461
Query: 729 --GSNAF--------GPPIP--PPGLGG-----GAFGD----ARPGMPSV-GNSGLPGLG 766
G + GPP P PPG G GA GD R G+ V G G PGL
Sbjct: 462 QKGESCLICDIDGYRGPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGL- 520
Query: 767 LDVPGFGGGPNNL---------SGPSGFGGGPQNFGNG-----------PGSLGGPPGFG 806
+ PG G P G GF G P G PG G P G
Sbjct: 521 IGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTGRAGSPGRDGHPGLPGPKGSPGSVG 580
Query: 807 ----SGPPGLGSAPGHLG--GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
GPPG PG G GPP PG GP G G PG S G PGP
Sbjct: 581 LKGERGPPGGVGFPGSRGDTGPPG-PPGYGPAGPIGDKGQAGFPGGPGSPGLPGP 634
Score = 69.3 bits (168), Expect = 2e-11
Identities = 85/254 (33%), Positives = 93/254 (36%), Gaps = 50/254 (19%)
Query: 634 QGKKGLK--MPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAG 691
QG KG K V G P VPG G + G G G PG G+PG G
Sbjct: 225 QGPKGDKGDQGVSGPPGVPGQAQVQEKG-DFATKGEKG----QKGEPGFQ----GMPGVG 275
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNGPPF----NFPGNFG-----GSNAFGPPIPPPGL 742
G P G G K P F +PG G G P PPG+
Sbjct: 276 --EKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGI 333
Query: 743 --GGGAFGD----ARPGMPSV----GNSGLPGL-------GLDVPGFGGGPN-----NLS 780
G G G+ PG P G G PGL GL VPG G P
Sbjct: 334 VIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEK 393
Query: 781 GPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHI 840
G GF G +G L GPPG GPPG PG+ G PGP PG GP I
Sbjct: 394 GDRGFPGTSLPGPSGRDGLPGPPG-SPGPPG---QPGYTNGIVECQPGP-PGD-QGPPGI 447
Query: 841 GGPPGFASSSGKPG 854
G PGF G+ G
Sbjct: 448 PGQPGFIGEIGEKG 461
Score = 67.8 bits (164), Expect = 5e-11
Identities = 81/269 (30%), Positives = 101/269 (37%), Gaps = 52/269 (19%)
Query: 633 AQGKKGLKMPVPGNPAVPGMPNA----GLPGVGLPSAGLPGAGLPSTGLPGSAITSA--- 685
A G GL+ + G P PG+P + G+PG+G P A P G GL G
Sbjct: 771 AIGPPGLQ-GIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLSGPPGIKGEKG 829
Query: 686 --GLPGAGMP-------SAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP 736
G PG MP + G+P G+ G + A P FPG+ G G P
Sbjct: 830 FPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGAPGIP--GFPGSKGEMGVMGTP 887
Query: 737 IPP--------PGLGGGAFGDARPGMPSVGNSGLPGLGLD-----VPGFGGGPN-----N 778
P PGL G PG S G G PGL D +PG G + +
Sbjct: 888 GQPGSPGPVGAPGLPGEKGDHGFPG--SSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGS 945
Query: 779 LSGPSGFGG--------GPQNFGNGPGSLGGPPGFGS----GPPGLGSAPGHLGGPPAFG 826
+ G G G G + PG+ G P G G PG PG + G P
Sbjct: 946 MKGQKGDQGEKGQIGPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPG-ISGTPGAP 1004
Query: 827 PGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
PGP G + + G PG G PGP
Sbjct: 1005 GLPGPKGSVGGMGLPGTPGEKGVPGIPGP 1033
Score = 66.2 bits (160), Expect = 1e-10
Identities = 80/229 (34%), Positives = 94/229 (41%), Gaps = 32/229 (13%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNAGLPG-VGLPSAGLPGAGLPSTGLPGSAITSAGLPGA-G 691
+G+ L + G PG G PG +G P G PGA GLPG AG+PG G
Sbjct: 463 KGESCLICDIDGYRGPPGPQ--GPPGEIGFP--GQPGAK-GDRGLPGRDGV-AGVPGPQG 516
Query: 692 MPSA-GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDA 750
P G P A GE F + + G P FPG G + G P D
Sbjct: 517 TPGLIGQPGAKGEPGEFYFDLRLKGDKGDP-GFPGQPGMTGRAGSP----------GRDG 565
Query: 751 RPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFG--GGPQNFGNGP-GSLG--GPPGF 805
PG+P G G PG + + G G P + P G G P G GP G +G G GF
Sbjct: 566 HPGLP--GPKGSPG-SVGLKGERGPPGGVGFPGSRGDTGPPGPPGYGPAGPIGDKGQAGF 622
Query: 806 GSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPG 854
GP G PG G P P PGP PG + G PGF G G
Sbjct: 623 PGGP-GSPGLPGPKGEPGKIVPLPGP---PGAEGLPGSPGFPGPQGDRG 667
Score = 60.1 bits (144), Expect = 9e-09
Identities = 75/214 (35%), Positives = 87/214 (40%), Gaps = 35/214 (16%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGV-GLPS-AGLPGAGLPSTGLPGSA--ITSAG 686
P G KG K GNP PG P G+PG G P G+PG G S G+ GS + G
Sbjct: 1259 PGIDGVKGDK----GNPGWPGAP--GVPGPKGDPGFQGMPGIG-GSPGITGSKGDMGPPG 1311
Query: 687 LPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGA 746
+PG P G+P G + + + G P G GPP PP G
Sbjct: 1312 VPGFQGPK-GLPGLQG-------IKGDQGDQGVP-------GAKGLPGPPGPP---GPYD 1353
Query: 747 FGDARPGMPSV-GNSGLPGL-GLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLG--GP 802
PG+P G GL GL GL P G L G G G P F PG G GP
Sbjct: 1354 IIKGEPGLPGPEGPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIP-GFDGAPGQKGEMGP 1412
Query: 803 PGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPG 836
G +GP G PG G P + GP P G
Sbjct: 1413 AG-PTGPRGFPGPPGPDGLPGSMGPPGTPSVDHG 1445
Score = 40.4 bits (93), Expect = 0.008
Identities = 35/139 (25%), Positives = 43/139 (30%), Gaps = 20/139 (14%)
Query: 99 PANASRSGPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTA 158
P GPP +SG LP P P + +
Sbjct: 87 PGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPL----------G 136
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPPPP---------IPPIPAMPSLPPMPSIPPIP 209
PP + G+P P + P P IP P P +P + P
Sbjct: 137 PPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQG-P 195
Query: 210 VPPPVPTLPPVPPVPPIPP 228
V PP T PP PP PP PP
Sbjct: 196 VGPPGFTGPPGPPGPPGPP 214
Score = 34.3 bits (77), Expect = 0.55
Identities = 39/168 (23%), Positives = 49/168 (29%), Gaps = 21/168 (12%)
Query: 106 GPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVGTAPPNMGAS 165
GPP G + LP T P S + N + PP +
Sbjct: 73 GPPGQKGDTGEPGLPGTKGTRGPPG-------ASGYPGNPGLPGIPGQDGPPGPPGIPGC 125
Query: 166 FGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVP----PPVPTLPPVP 221
G T + PP +P P P +P + P P L
Sbjct: 126 NG----------TKGERGPLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGER 175
Query: 222 PVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLN 269
P IP P P + L G P PP P P G G M L+
Sbjct: 176 GFPGIPGTPGPPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLS 223
Score = 31.6 bits (70), Expect = 3.6
Identities = 40/156 (25%), Positives = 49/156 (31%), Gaps = 37/156 (23%)
Query: 159 PPNMGASFGSPTFSSTVPSTASPMNTVPP--PPIPPIPAMPSLPPMPSIPPI-------- 208
PP G P T + P + P P +P IP P P IP
Sbjct: 74 PPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERG 133
Query: 209 PVPPP-VPTLPPVPPVPPIPPVPSVP---------------------PMTPLPPMSGMPP 246
P+ PP +P P P +P + P P TP PP G+P
Sbjct: 134 PLGPPGLPGFAGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPP--GLPG 191
Query: 247 LNPPPVAPL---PAGMNGSGAPMNLNNNLNPMFLGP 279
L P P P G G P + F GP
Sbjct: 192 LQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGP 227
Score = 31.6 bits (70), Expect = 3.6
Identities = 30/114 (26%), Positives = 35/114 (30%), Gaps = 8/114 (7%)
Query: 156 GTAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVP 215
G P G F S P P I P+P P +P P P P
Sbjct: 607 GYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLPGSPGFPGPQGDR 666
Query: 216 TLPPVPPVPPIPPVPSVPPMT----PLPP----MSGMPPLNPPPVAPLPAGMNG 261
P P P +P P PP + G+P PP P G NG
Sbjct: 667 GFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDMGPPGTPGRPGFNG 720
Score = 31.2 bits (69), Expect = 4.7
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 16/78 (20%)
Query: 200 PPMPSIPPIPVPPPVPTLP--PVPPVPPIPPVPSVP--------------PMTPLPPMSG 243
P P P P P LP P PP P+P P P T LP SG
Sbjct: 349 PGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSG 408
Query: 244 MPPLNPPPVAPLPAGMNG 261
L PP +P P G G
Sbjct: 409 RDGLPGPPGSPGPPGQPG 426
Score = 31.2 bits (69), Expect = 4.7
Identities = 29/115 (25%), Positives = 38/115 (33%), Gaps = 26/115 (22%)
Query: 172 SSTVPSTASPMNTVPPPPIPPIPAMPSLPP--------------MPSIPPIPVPPPVPTL 217
S +P + + PP P +P P P +P +P P P L
Sbjct: 1199 SPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGL 1258
Query: 218 PPVPPV------PPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPM 266
P + V P P P VP P GMP + P G+ GS M
Sbjct: 1259 PGIDGVKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSP------GITGSKGDM 1307
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 93.6 bits (231), Expect = 8e-19
Identities = 95/271 (35%), Positives = 100/271 (36%), Gaps = 51/271 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA----GLPGV-GLPSA-------GLPGAGLPSTGLP 678
PP +G K VPG PG+ G PG G P A GLPG P T P
Sbjct: 673 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT--PGTDGP 730
Query: 679 GSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSK----EANNGPPFNFPGNFGGSNAFG 734
A AG PGA P G+ GE A G K + P PG GG G
Sbjct: 731 KGASGPAGPPGAQGPP-GLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 789
Query: 735 PPIPPPGLGG--GAFGDARPGMP--SVGNSGLPG----LGLDVPGFGGGPNNLSGPSGFG 786
P I PPG G G G+ P P S G G PG G P GP G G
Sbjct: 790 P-IGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 848
Query: 787 G--------------GPQNFGNGPGSLG-----GPPGF--GSGPPGLGSAPGHLG--GPP 823
G GPQ PG G GP G GPPG PG G GPP
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Query: 824 AFGPGPGPGPGPGPIHIGGPPGFASSSGKPG 854
PGP PGP GP G SG PG
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 939
Score = 80.1 bits (196), Expect = 9e-15
Identities = 91/263 (34%), Positives = 101/263 (38%), Gaps = 47/263 (17%)
Query: 630 NPPAQGKKGLKMPVP--GNPAVPGMPN----AGLPGVGLPSAGLPGA----GLPST-GLP 678
NP G+ G+ P+ G P PG P AG PG G PG G P T GLP
Sbjct: 226 NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKA-GERGPPGPQGARGFPGTPGLP 284
Query: 679 GSAITSAGLPG--AGMPSAGIPSAGGEEHAFLTVGSKEANNGP----PFNFPGNFGGSNA 732
G G PG AG P GE GS N P P PG G +
Sbjct: 285 GVK-GHRGYPGLDGAKGEAGAPGVKGES------GSPGENGSPGPMGPRGLPGERGRTG- 336
Query: 733 FGPPIPPPGLGGGAFGDARPGMPS----VGNSGLPGLGLDVPGFGG--GPNNLSGPSGFG 786
P G G D +PG VG +G PG PG G GP GP G
Sbjct: 337 ------PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP-GAPGAKGEAGPTGARGPEG-A 388
Query: 787 GGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFG----PG-PGPGPGPGPIHIG 841
GP+ PGS G P SG PG PG G A G PG PGP PGP
Sbjct: 389 QGPRGEPGTPGSPG--PAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGAT 446
Query: 842 GPPGFASSSGKPGPTVIKVQNMP 864
GP G +G+PG K + P
Sbjct: 447 GPLGPKGQTGEPGIAGFKGEQGP 469
Score = 79.3 bits (194), Expect = 2e-14
Identities = 92/253 (36%), Positives = 101/253 (39%), Gaps = 52/253 (20%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNA----GLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG 689
QGK G PG PG P G PGV G PG + G PG A GLPG
Sbjct: 572 QGKVG-PSGAPGEDGRPGPPGPQGARGQPGV----MGFPGPK-GANGEPGKA-GEKGLPG 624
Query: 690 A-GMPSAGIPSAGGEEHAFLTVG-SKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAF 747
A G+ G+P GE A G + A PG G GPP PPG GG
Sbjct: 625 APGL--RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP-GPPGEGG--- 678
Query: 748 GDARPGMPSV-GNSGLPGL-----GLDVPGFGGGPN--NLSGPSGFGGGPQNFG-NGPGS 798
+PG V G +G PGL PG G P L GP G G P G G
Sbjct: 679 ---KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 735
Query: 799 LGGPPGFGSGPPGLGSAPGHLGGPPAFGP----------GPGPGPG-------PGPIHIG 841
GPPG GPPGL PG G GP GP PG GPI
Sbjct: 736 PAGPPG-AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI--- 791
Query: 842 GPPGFASSSGKPG 854
GPPG A ++G+ G
Sbjct: 792 GPPGPAGANGEKG 804
Score = 76.6 bits (187), Expect = 1e-13
Identities = 98/288 (34%), Positives = 107/288 (37%), Gaps = 71/288 (24%)
Query: 633 AQGKKGLKMP--VPGNPAVPGMPNA-GLPGV-GLP----SAGLPG-AGLPS--------- 674
A+G +G + P PG P PG A G PG G+P SAG PG AG P
Sbjct: 382 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 441
Query: 675 -------------TGLPGSAITSA-----GLPGAGMPSAGIPSAGGEEHAFLTVGSK--- 713
TG PG A G PG P G P GEE G
Sbjct: 442 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ-GAPGPAGEEGKRGARGEPGGV 500
Query: 714 -----EANNGPPFN--FPGNFGGSNAFGPPIP--PPGLGGGAFGDARPGMPSVGNSGLPG 764
G P N FPG G + G P P GL G + PG P G GLPG
Sbjct: 501 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP--GEPGLPG 558
Query: 765 L-GLDVPGFGGGPNNLSGPSGFGG--------GPQNFGNGPGSLG--GPPGFG-----SG 808
GL GP GPSG G GPQ PG +G GP G +G
Sbjct: 559 ARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAG 618
Query: 809 PPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPT 856
GL APG G P G GP PGP GP G G PGP+
Sbjct: 619 EKGLPGAPGLRGLPGKDGETGAAGP-PGP---AGPAGERGEQGAPGPS 662
Score = 74.3 bits (181), Expect = 5e-13
Identities = 85/261 (32%), Positives = 95/261 (36%), Gaps = 40/261 (15%)
Query: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAG---------LPGAGLPSTGL 677
EK P + + PGNP PG P G PG+G A GA L
Sbjct: 142 EKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG 201
Query: 678 PGSAITSAGLPG-AGMPSA----GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNA 732
P + G PG AG P G P GE +G + GPP PG G
Sbjct: 202 PMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR----GPP-GPPGKPGDDGE 256
Query: 733 FGPPIP-----PPGLGGGAFGDARPGMPSV-GNSGLPGLG-----LDVPGFGG-----GP 776
G P PPG G PG+P V G+ G PGL PG G G
Sbjct: 257 AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGE 316
Query: 777 NNLSGPSGFGGGPQNFGN-GPGSLGGPPGFGSGPPGLGSAPGHLG--GPPAFGPGPGPGP 833
N GP G G P G GP G G G PG PG +G G P F PG
Sbjct: 317 NGSPGPMGPRGLPGERGRTGPAGAAGARG-NDGQPGPAGPPGPVGPAGGPGFPGAPGAKG 375
Query: 834 GPGPIHIGGPPGFASSSGKPG 854
GP GP G G+PG
Sbjct: 376 EAGPTGARGPEGAQGPRGEPG 396
Score = 68.2 bits (165), Expect = 3e-11
Identities = 92/269 (34%), Positives = 101/269 (37%), Gaps = 61/269 (22%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPN-------AGLPGVGLPSA-----GLPGA----GLPS 674
P G+KGL PG P + G+P AG PG P+ G PG GLP
Sbjct: 614 PGKAGEKGL----PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG 669
Query: 675 TGLP---GSAITSAGLPG-AGMPSA-------GIPSAGGEEHAFLTVGSKEANNGPPFNF 723
P G G+PG AG P G P G A G + G P
Sbjct: 670 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR----GLP-GT 724
Query: 724 PGNFGGSNAFGPPIPP-----PGLGG-----GAFGDARP--GMPSVGNSGLPGLGLDVPG 771
PG G A GP PP PGL G GA G A P VG G G PG
Sbjct: 725 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG----APG 780
Query: 772 FGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLG-----GPPAFG 826
GG L+GP G GP NG GPPG +G G APG G GP F
Sbjct: 781 KDGG-RGLTGPIG-PPGPAG-ANGEKGEVGPPG-PAGSAGARGAPGERGETGPPGPAGFA 836
Query: 827 PGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
PG PG G G +G PGP
Sbjct: 837 GPPGADGQPGAKGEQGEAGQKGDAGAPGP 865
Score = 67.8 bits (164), Expect = 5e-11
Identities = 84/250 (33%), Positives = 91/250 (36%), Gaps = 36/250 (14%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSA-GLPGAGLPSTGLPGSAITSAGLPG 689
P QG G P P P P G P A G PGA G PGS + G PG
Sbjct: 863 PGPQGPSGA--PGPQGPTGVTGPKGARGAQGPPGATGFPGAA-GRVGPPGSN-GNPGPPG 918
Query: 690 AGMPSA--GIPSAGGEEHAFLTVGSK--EANNGPPFNF--PGNFGGSNAFGPPIPPPGLG 743
PS G A G+ G + GPP PG+ G S A GPP P GL
Sbjct: 919 PPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPP-GPQGLA 977
Query: 744 GGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPP 803
G PG G G PGL PG G P P G GP L GP
Sbjct: 978 GQRGIVGLPGQR--GERGFPGL----PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 1031
Query: 804 GF--------GSGPPGLGSAPG---------HLGGPPAFGPGPGPGPGPGPIHIGGPPGF 846
G GPPG A G +G P A GP PGP GP G G
Sbjct: 1032 GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA-GPTGKQGDRGE 1090
Query: 847 ASSSGKPGPT 856
A + G GP+
Sbjct: 1091 AGAQGPMGPS 1100
Score = 65.5 bits (158), Expect = 2e-10
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 45/259 (17%)
Query: 621 LEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPG-AGLPSTGLP 678
L R I P +G++G PG P G P G PG G PG G P P
Sbjct: 976 LAGQRGIVGLPGQRGERGF----PGLPGPSGEPGKQGAPGAS-GDRGPPGPVGPPGLTGP 1030
Query: 679 GSAITSAGLPGAGMP-----SAGIPSAGGEEHAFLTVGSKEANNGP----PFNFPGNFGG 729
G PGA P +AG+ GE A G+ P P G+ G
Sbjct: 1031 AGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE 1090
Query: 730 SNAFGP--PIPPPGLGG-----GAFGD----ARPGMPSV-GNSGLPGL-GLDVPGFGGGP 776
+ A GP P P G G G GD PG + G+ G GL GL P G
Sbjct: 1091 AGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGD 1150
Query: 777 NNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPG 836
SGP+G P GPPG P G G G P GP PGP G
Sbjct: 1151 QGASGPAG-----------PSGPRGPPG----PVGPSGKDGANGIPGPIGP-PGPRGRSG 1194
Query: 837 PIHIGGPPGFASSSGKPGP 855
GPPG G PGP
Sbjct: 1195 ETGPAGPPGNPGPPGPPGP 1213
Score = 62.8 bits (151), Expect = 1e-09
Identities = 86/273 (31%), Positives = 98/273 (35%), Gaps = 50/273 (18%)
Query: 628 EKNPPAQ-GKKGLKMPV--PGNPAVPGMPN-AGLPGVGLPSAGLPGAGLPSTGLPGSAIT 683
+ PP + G+ GL+ P PG PG +G G P G+ GLPG
Sbjct: 934 DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGI--VGLPGQR-G 990
Query: 684 SAGLPGAGMPSA-----GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIP 738
G PG PS G P A G+ VG P PG G A GPP
Sbjct: 991 ERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG--PAGEPGREGSPGADGPPGR 1048
Query: 739 PPGLG--------GGAFGDARPGMP-SVGNSGLPGLGLDVPGFGG-GPNNLSGPSGFGG- 787
G G PG P S G +G G D G GP SGP+G G
Sbjct: 1049 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1108
Query: 788 -GPQNFGNGPGSLGGPPGFG-------SGPPGLGSAPGHLGGPPAFGPG--------PGP 831
GPQ G G P G +G GL PG G A GP PGP
Sbjct: 1109 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1168
Query: 832 -GPG--------PGPIHIGGPPGFASSSGKPGP 855
GP PGPI GP G + +G GP
Sbjct: 1169 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1201
Score = 43.9 bits (102), Expect = 7e-04
Identities = 49/154 (31%), Positives = 54/154 (35%), Gaps = 44/154 (28%)
Query: 736 PIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGG--GPQNFG 793
PI P L A +PG G G PG D+ G G P GP G G GP+
Sbjct: 87 PICPTDL---ATASGQPGPK--GQKGEPGDIKDIVGPKGPP----GPQGPAGEQGPRGDR 137
Query: 794 NGPGSLGGP-PGFGSGPPGLGSAPGHLG-----GPPAFG--------------------- 826
G G P P G PG PG G GPP G
Sbjct: 138 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLG 197
Query: 827 --PGP----GPGPGPGPIHIGGPPGFASSSGKPG 854
GP GP PGP GP GF + G+PG
Sbjct: 198 VMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 231
Score = 33.9 bits (76), Expect = 0.72
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 776 PNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGP 835
P +L+ SG GP+ PG + G GPPG P GP G P
Sbjct: 90 PTDLATASG-QPGPKGQKGEPGDIKDIVG-PKGPPG-PQGPAGEQGPRGDRGDKGEKGAP 146
Query: 836 GPIHIGGPPGFASSSGKPGP 855
GP G PG + G PGP
Sbjct: 147 GPRGRDGEPGTPGNPGPPGP 166
Score = 32.7 bits (73), Expect = 1.6
Identities = 28/75 (37%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 188 PPIPPIPAMPSLPPMPSIPPIPVPPPVP------TLPPVPPVPPIPPVPSVPPMTPLPPM 241
P PP P PS + P P+ PP P T P PP P PP P PP P M
Sbjct: 1162 PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP-GPGIDM 1220
Query: 242 SGMPPLNPPPVAPLP 256
S L P P P
Sbjct: 1221 SAFAGLGPREKGPDP 1235
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 93.6 bits (231), Expect = 8e-19
Identities = 95/271 (35%), Positives = 100/271 (36%), Gaps = 51/271 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA----GLPGV-GLPSA-------GLPGAGLPSTGLP 678
PP +G K VPG PG+ G PG G P A GLPG P T P
Sbjct: 604 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGT--PGTDGP 661
Query: 679 GSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSK----EANNGPPFNFPGNFGGSNAFG 734
A AG PGA P G+ GE A G K + P PG GG G
Sbjct: 662 KGASGPAGPPGAQGPP-GLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 720
Query: 735 PPIPPPGLGG--GAFGDARPGMP--SVGNSGLPG----LGLDVPGFGGGPNNLSGPSGFG 786
P I PPG G G G+ P P S G G PG G P GP G G
Sbjct: 721 P-IGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAK 779
Query: 787 G--------------GPQNFGNGPGSLG-----GPPGF--GSGPPGLGSAPGHLG--GPP 823
G GPQ PG G GP G GPPG PG G GPP
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Query: 824 AFGPGPGPGPGPGPIHIGGPPGFASSSGKPG 854
PGP PGP GP G SG PG
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPG 870
Score = 80.1 bits (196), Expect = 9e-15
Identities = 91/263 (34%), Positives = 101/263 (38%), Gaps = 47/263 (17%)
Query: 630 NPPAQGKKGLKMPVP--GNPAVPGMPN----AGLPGVGLPSAGLPGA----GLPST-GLP 678
NP G+ G+ P+ G P PG P AG PG G PG G P T GLP
Sbjct: 157 NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKA-GERGPPGPQGARGFPGTPGLP 215
Query: 679 GSAITSAGLPG--AGMPSAGIPSAGGEEHAFLTVGSKEANNGP----PFNFPGNFGGSNA 732
G G PG AG P GE GS N P P PG G +
Sbjct: 216 GVK-GHRGYPGLDGAKGEAGAPGVKGES------GSPGENGSPGPMGPRGLPGERGRTG- 267
Query: 733 FGPPIPPPGLGGGAFGDARPGMPS----VGNSGLPGLGLDVPGFGG--GPNNLSGPSGFG 786
P G G D +PG VG +G PG PG G GP GP G
Sbjct: 268 ------PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFP-GAPGAKGEAGPTGARGPEG-A 319
Query: 787 GGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFG----PG-PGPGPGPGPIHIG 841
GP+ PGS G P SG PG PG G A G PG PGP PGP
Sbjct: 320 QGPRGEPGTPGSPG--PAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGAT 377
Query: 842 GPPGFASSSGKPGPTVIKVQNMP 864
GP G +G+PG K + P
Sbjct: 378 GPLGPKGQTGEPGIAGFKGEQGP 400
Score = 79.3 bits (194), Expect = 2e-14
Identities = 92/253 (36%), Positives = 101/253 (39%), Gaps = 52/253 (20%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNA----GLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG 689
QGK G PG PG P G PGV G PG + G PG A GLPG
Sbjct: 503 QGKVG-PSGAPGEDGRPGPPGPQGARGQPGV----MGFPGPK-GANGEPGKA-GEKGLPG 555
Query: 690 A-GMPSAGIPSAGGEEHAFLTVG-SKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAF 747
A G+ G+P GE A G + A PG G GPP PPG GG
Sbjct: 556 APGL--RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP-GPPGEGG--- 609
Query: 748 GDARPGMPSV-GNSGLPGL-----GLDVPGFGGGPN--NLSGPSGFGGGPQNFG-NGPGS 798
+PG V G +G PGL PG G P L GP G G P G G
Sbjct: 610 ---KPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASG 666
Query: 799 LGGPPGFGSGPPGLGSAPGHLGGPPAFGP----------GPGPGPG-------PGPIHIG 841
GPPG GPPGL PG G GP GP PG GPI
Sbjct: 667 PAGPPG-AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI--- 722
Query: 842 GPPGFASSSGKPG 854
GPPG A ++G+ G
Sbjct: 723 GPPGPAGANGEKG 735
Score = 76.6 bits (187), Expect = 1e-13
Identities = 98/288 (34%), Positives = 107/288 (37%), Gaps = 71/288 (24%)
Query: 633 AQGKKGLKMP--VPGNPAVPGMPNA-GLPGV-GLP----SAGLPG-AGLPS--------- 674
A+G +G + P PG P PG A G PG G+P SAG PG AG P
Sbjct: 313 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 372
Query: 675 -------------TGLPGSAITSA-----GLPGAGMPSAGIPSAGGEEHAFLTVGSK--- 713
TG PG A G PG P G P GEE G
Sbjct: 373 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQ-GAPGPAGEEGKRGARGEPGGV 431
Query: 714 -----EANNGPPFN--FPGNFGGSNAFGPPIP--PPGLGGGAFGDARPGMPSVGNSGLPG 764
G P N FPG G + G P P GL G + PG P G GLPG
Sbjct: 432 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP--GEPGLPG 489
Query: 765 L-GLDVPGFGGGPNNLSGPSGFGG--------GPQNFGNGPGSLG--GPPGFG-----SG 808
GL GP GPSG G GPQ PG +G GP G +G
Sbjct: 490 ARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAG 549
Query: 809 PPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPT 856
GL APG G P G GP PGP GP G G PGP+
Sbjct: 550 EKGLPGAPGLRGLPGKDGETGAAGP-PGP---AGPAGERGEQGAPGPS 593
Score = 74.3 bits (181), Expect = 5e-13
Identities = 85/261 (32%), Positives = 95/261 (36%), Gaps = 40/261 (15%)
Query: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAG---------LPGAGLPSTGL 677
EK P + + PGNP PG P G PG+G A GA L
Sbjct: 73 EKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQG 132
Query: 678 PGSAITSAGLPG-AGMPSA----GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNA 732
P + G PG AG P G P GE +G + GPP PG G
Sbjct: 133 PMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPR----GPP-GPPGKPGDDGE 187
Query: 733 FGPPIP-----PPGLGGGAFGDARPGMPSV-GNSGLPGLG-----LDVPGFGG-----GP 776
G P PPG G PG+P V G+ G PGL PG G G
Sbjct: 188 AGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGE 247
Query: 777 NNLSGPSGFGGGPQNFGN-GPGSLGGPPGFGSGPPGLGSAPGHLG--GPPAFGPGPGPGP 833
N GP G G P G GP G G G PG PG +G G P F PG
Sbjct: 248 NGSPGPMGPRGLPGERGRTGPAGAAGARG-NDGQPGPAGPPGPVGPAGGPGFPGAPGAKG 306
Query: 834 GPGPIHIGGPPGFASSSGKPG 854
GP GP G G+PG
Sbjct: 307 EAGPTGARGPEGAQGPRGEPG 327
Score = 68.2 bits (165), Expect = 3e-11
Identities = 92/269 (34%), Positives = 101/269 (37%), Gaps = 61/269 (22%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPN-------AGLPGVGLPSA-----GLPGA----GLPS 674
P G+KGL PG P + G+P AG PG P+ G PG GLP
Sbjct: 545 PGKAGEKGL----PGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG 600
Query: 675 TGLP---GSAITSAGLPG-AGMPSA-------GIPSAGGEEHAFLTVGSKEANNGPPFNF 723
P G G+PG AG P G P G A G + G P
Sbjct: 601 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR----GLP-GT 655
Query: 724 PGNFGGSNAFGPPIPP-----PGLGG-----GAFGDARP--GMPSVGNSGLPGLGLDVPG 771
PG G A GP PP PGL G GA G A P VG G G PG
Sbjct: 656 PGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG----APG 711
Query: 772 FGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLG-----GPPAFG 826
GG L+GP G GP NG GPPG +G G APG G GP F
Sbjct: 712 KDGG-RGLTGPIG-PPGPAG-ANGEKGEVGPPG-PAGSAGARGAPGERGETGPPGPAGFA 767
Query: 827 PGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
PG PG G G +G PGP
Sbjct: 768 GPPGADGQPGAKGEQGEAGQKGDAGAPGP 796
Score = 67.8 bits (164), Expect = 5e-11
Identities = 84/250 (33%), Positives = 91/250 (36%), Gaps = 36/250 (14%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSA-GLPGAGLPSTGLPGSAITSAGLPG 689
P QG G P P P P G P A G PGA G PGS + G PG
Sbjct: 794 PGPQGPSGA--PGPQGPTGVTGPKGARGAQGPPGATGFPGAA-GRVGPPGSN-GNPGPPG 849
Query: 690 AGMPSA--GIPSAGGEEHAFLTVGSK--EANNGPPFNF--PGNFGGSNAFGPPIPPPGLG 743
PS G A G+ G + GPP PG+ G S A GPP P GL
Sbjct: 850 PPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPP-GPQGLA 908
Query: 744 GGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPP 803
G PG G G PGL PG G P P G GP L GP
Sbjct: 909 GQRGIVGLPGQR--GERGFPGL----PGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA 962
Query: 804 GF--------GSGPPGLGSAPG---------HLGGPPAFGPGPGPGPGPGPIHIGGPPGF 846
G GPPG A G +G P A GP PGP GP G G
Sbjct: 963 GEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPA-GPTGKQGDRGE 1021
Query: 847 ASSSGKPGPT 856
A + G GP+
Sbjct: 1022 AGAQGPMGPS 1031
Score = 65.5 bits (158), Expect = 2e-10
Identities = 83/259 (32%), Positives = 94/259 (36%), Gaps = 45/259 (17%)
Query: 621 LEDMREIEKNPPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPG-AGLPSTGLP 678
L R I P +G++G PG P G P G PG G PG G P P
Sbjct: 907 LAGQRGIVGLPGQRGERGF----PGLPGPSGEPGKQGAPGAS-GDRGPPGPVGPPGLTGP 961
Query: 679 GSAITSAGLPGAGMP-----SAGIPSAGGEEHAFLTVGSKEANNGP----PFNFPGNFGG 729
G PGA P +AG+ GE A G+ P P G+ G
Sbjct: 962 AGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGE 1021
Query: 730 SNAFGP--PIPPPGLGG-----GAFGD----ARPGMPSV-GNSGLPGL-GLDVPGFGGGP 776
+ A GP P P G G G GD PG + G+ G GL GL P G
Sbjct: 1022 AGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGD 1081
Query: 777 NNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPG 836
SGP+G P GPPG P G G G P GP PGP G
Sbjct: 1082 QGASGPAG-----------PSGPRGPPG----PVGPSGKDGANGIPGPIGP-PGPRGRSG 1125
Query: 837 PIHIGGPPGFASSSGKPGP 855
GPPG G PGP
Sbjct: 1126 ETGPAGPPGNPGPPGPPGP 1144
Score = 62.8 bits (151), Expect = 1e-09
Identities = 86/273 (31%), Positives = 98/273 (35%), Gaps = 50/273 (18%)
Query: 628 EKNPPAQ-GKKGLKMPV--PGNPAVPGMPN-AGLPGVGLPSAGLPGAGLPSTGLPGSAIT 683
+ PP + G+ GL+ P PG PG +G G P G+ GLPG
Sbjct: 865 DSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGI--VGLPGQR-G 921
Query: 684 SAGLPGAGMPSA-----GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIP 738
G PG PS G P A G+ VG P PG G A GPP
Sbjct: 922 ERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG--PAGEPGREGSPGADGPPGR 979
Query: 739 PPGLG--------GGAFGDARPGMP-SVGNSGLPGLGLDVPGFGG-GPNNLSGPSGFGG- 787
G G PG P S G +G G D G GP SGP+G G
Sbjct: 980 DGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGI 1039
Query: 788 -GPQNFGNGPGSLGGPPGFG-------SGPPGLGSAPGHLGGPPAFGPG--------PGP 831
GPQ G G P G +G GL PG G A GP PGP
Sbjct: 1040 QGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGP 1099
Query: 832 -GPG--------PGPIHIGGPPGFASSSGKPGP 855
GP PGPI GP G + +G GP
Sbjct: 1100 VGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP 1132
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/132 (31%), Positives = 46/132 (34%), Gaps = 39/132 (29%)
Query: 758 GNSGLPGLGLDVPGFGGGPNNLSGPSGFGG--GPQNFGNGPGSLGGP-PGFGSGPPGLGS 814
G G PG D+ G G P GP G G GP+ G G P P G PG
Sbjct: 35 GQKGEPGDIKDIVGPKGPP----GPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPG 90
Query: 815 APGHLG-----GPPAFG-----------------------PGP----GPGPGPGPIHIGG 842
PG G GPP G GP GP PGP G
Sbjct: 91 NPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPG 150
Query: 843 PPGFASSSGKPG 854
P GF + G+PG
Sbjct: 151 PQGFQGNPGEPG 162
Score = 32.7 bits (73), Expect = 1.6
Identities = 28/75 (37%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 188 PPIPPIPAMPSLPPMPSIPPIPVPPPVP------TLPPVPPVPPIPPVPSVPPMTPLPPM 241
P PP P PS + P P+ PP P T P PP P PP P PP P M
Sbjct: 1093 PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPP-GPGIDM 1151
Query: 242 SGMPPLNPPPVAPLP 256
S L P P P
Sbjct: 1152 SAFAGLGPREKGPDP 1166
Score = 32.3 bits (72), Expect = 2.1
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 788 GPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFA 847
GP+ PG + G GPPG P GP G PGP G PG
Sbjct: 32 GPKGQKGEPGDIKDIVG-PKGPPG-PQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTP 89
Query: 848 SSSGKPGP 855
+ G PGP
Sbjct: 90 GNPGPPGP 97
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 92.4 bits (228), Expect = 2e-18
Identities = 91/251 (36%), Positives = 103/251 (41%), Gaps = 47/251 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSA-----GLPGA----------GLPST 675
P +G++GL PG P PG+P G PG P G+PGA G P
Sbjct: 330 PGGKGEQGL----PGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGI 385
Query: 676 GLPGSAITSAGLPGA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFN-FPGNFGGSNA 732
G P G+PG G P A G P GE G P FPG G
Sbjct: 386 GGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGE 445
Query: 733 FGPP----IPPP-GLGGGAFGDARPGMPSV-------GNSGLPG-LGLD----VPGFGGG 775
GPP +P P G G A PG+P V G G+PG GL +PG GG
Sbjct: 446 VGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGG- 504
Query: 776 PNNLSGPSGFGGGPQNFGNGPGSLGGPPGF-GSGPPGLGSAPGHLGGPPAFGPGPGPGPG 834
P+ GP G G G L GPPGF G G PG+ G G P A GP PG
Sbjct: 505 PSGPIGPPGIPGP-----KGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGL- 558
Query: 835 PGPIHIGGPPG 845
PGP GPPG
Sbjct: 559 PGPPGPPGPPG 569
Score = 90.1 bits (222), Expect = 9e-18
Identities = 98/286 (34%), Positives = 110/286 (38%), Gaps = 68/286 (23%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMPNAGLPGV-GLPSA-GLPGA----GLPSTGLPGSAI 682
P A G+ G + P VPG PG+P G PG G+P G PG GLP GLPG
Sbjct: 289 PGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLP--GLPGPP- 345
Query: 683 TSAGLPGAGMPS----------AGIPSAGGEEHAFLTVGSKEANN--------------G 718
GLPG G P G+P A G +G+ G
Sbjct: 346 ---GLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG 402
Query: 719 PP--FNFPGNFGGSNAFGPPIPP-----PGLGG-----GAFGDARP----GMPS------ 756
PP FPG G GP PP PGL G G G+ P G+P
Sbjct: 403 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG 462
Query: 757 -VGNSGLPGLGLDVPGFGG--GPNNLSGPSGFGGGPQNFG-NGPGSLGGPPGFGS--GPP 810
G G+PGL VPG G G + G G G P G GP GPPG G P
Sbjct: 463 EAGQKGVPGLP-GVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEP 521
Query: 811 GLGSAPGHLG-GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
GL PG G G P GP PG + G PG G PGP
Sbjct: 522 GLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGP 567
Score = 88.2 bits (217), Expect = 3e-17
Identities = 81/227 (35%), Positives = 96/227 (42%), Gaps = 54/227 (23%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNAGLPGV-GLPSA-GLPGAGLPSTGLPGSAITSAGLPGAG 691
QG +G P G P PG+P G+PG+ G P G PG G P G+PG G PGA
Sbjct: 120 QGPRGEPGP-RGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKP--GMPGMP----GKPGA- 171
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDAR 751
G+P A GE +G K G G GP PP
Sbjct: 172 ---MGMPGAKGE------IGQK-----------GEIGPMGIPGPQGPP----------GP 201
Query: 752 PGMPSVGNSGLPGL-GLDVPGFGGGPNNLSGPSGFGG--GPQNFGNGPGSLGGPPGFGSG 808
G+P +G G PGL G P GP L GP G G G + FG + G PG G
Sbjct: 202 HGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFG-----MPGAPGV-KG 255
Query: 809 PPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
PPG+ PG +G P PG PGP GP G + G+PGP
Sbjct: 256 PPGMHGPPGPVGLPGVGKPGVTGFPGP-----QGPLGKPGAPGEPGP 297
Score = 82.0 bits (201), Expect = 2e-15
Identities = 96/292 (32%), Positives = 109/292 (37%), Gaps = 75/292 (25%)
Query: 627 IEKNPPAQGKKGLKMP----VPGNPAVPGMPNA-------------GLPGV-------GL 662
I+ P QG G+ P +PG P GMP A G+PG GL
Sbjct: 145 IKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGL 204
Query: 663 PSAGLPGA-GLPSTGLPGSAITSAGLPGA-------GMPSAGIPSAGGEEHAFLTVGSKE 714
P G PG GLP P GLPG G G+P A G V
Sbjct: 205 PGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPG-------VKGPP 257
Query: 715 ANNGPP--FNFPGNFGGSNAFGPPIPPPGLGG-GAFGDARP----GMPSV-GNSGLPGLG 766
+GPP PG G G P P LG GA G+ P G+P V G G+PG+G
Sbjct: 258 GMHGPPGPVGLPG-VGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIG 316
Query: 767 LD-------VPGFGGGPNN-----LSGPSGFGG----------GPQNFGNGPGSLGGPPG 804
PGF GG L GP G G G + G PG+LG
Sbjct: 317 KPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGE 376
Query: 805 FGS-GPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
G G PG+G PG G P PGP PG I GP G G GP
Sbjct: 377 KGPIGAPGIGGPPGEPGLPGI----PGPMGPPGAIGFPGPKGEGGIVGPQGP 424
Score = 56.6 bits (135), Expect = 1e-07
Identities = 58/178 (32%), Positives = 67/178 (37%), Gaps = 25/178 (14%)
Query: 688 PGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAF 747
P M +P G E + + S GP G GPP PPGL G
Sbjct: 95 PAPRMGKEAVPKKGKE----IPLASLRGEQGPR-------GEPGPRGPP-GPPGLPGHGI 142
Query: 748 GDARPGMPSVGNSGLPGLGLD-VPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFG 806
+ G P G G PG+G +PG G P + P G Q GP + GP
Sbjct: 143 PGIK-GKP--GPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGP---- 195
Query: 807 SGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQNMP 864
GPPG PG +G P GPG PGP GP G G GP K MP
Sbjct: 196 QGPPGPHGLPG-IGKPG----GPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMP 248
Score = 53.1 bits (126), Expect = 1e-06
Identities = 59/197 (29%), Positives = 75/197 (38%), Gaps = 41/197 (20%)
Query: 611 GREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGM----PNAGLPG------- 659
G+ F+ V MR + +G+ G K VPG P VPG+ G+PG
Sbjct: 438 GKPGFLGEVGPPGMRGLPGPIGPKGEAGQK-GVPGLPGVPGLLGPKGEPGIPGDQGLQGP 496
Query: 660 VGLPSAGLPGAGLPSTGLPGSAITSAGLPGA-GMPSAGIPSAGGEEHAFLTVGSKEANNG 718
G+P G P + G+PG GLPG G P G P G +G
Sbjct: 497 PGIPGIGGPSGPIGPPGIPGPK-GEPGLPGPPGFPGIGKPGVAGL-------------HG 542
Query: 719 PPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNN 778
PP G A GP PGL G PG P+V P G +P G G +
Sbjct: 543 PP-------GKPGALGPQ-GQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDG 594
Query: 779 LSGPSGFG------GGP 789
+ P +G GGP
Sbjct: 595 VKPPHAYGAKKGKNGGP 611
Score = 43.5 bits (101), Expect = 0.001
Identities = 36/114 (31%), Positives = 40/114 (35%), Gaps = 24/114 (21%)
Query: 175 VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVP-------PP------VPTLPPVP 221
+P P + PP IP P LP P P I P PP P P
Sbjct: 499 IPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGL 558
Query: 222 PVPPIPPVPSVPP--MTPLPPMS---------GMPPLNPPPVAPLPAGMNGSGA 264
P PP PP P PP M P PP G+ + PP G NG A
Sbjct: 559 PGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPA 612
Score = 34.7 bits (78), Expect = 0.42
Identities = 36/112 (32%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
Query: 175 VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPP 234
VP + P P IP L P IP I P P PP P P P
Sbjct: 469 VPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSG-------PIGPPGIPGPKGEP 521
Query: 235 MTPLPPMSGMPPLNPPPVAPLPAGMNG-SGAPMNLNNNLNPMFLGPLNPVNP 285
P PP G P + P V AG++G G P L P GP P P
Sbjct: 522 GLPGPP--GFPGIGKPGV----AGLHGPPGKPGALGPQGQPGLPGPPGPPGP 567
Score = 33.5 bits (75), Expect = 0.95
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 162 MGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLP---PMPSIPPIPVPPPVPTLP 218
MG + P M + P P A+P P+ S+ P P P
Sbjct: 70 MGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPG-P 128
Query: 219 PVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPA-----GMNGSGAPMNLNNNLN 273
PP PP P +P + P G P + P + +P GM G+ + +
Sbjct: 129 RGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIG 188
Query: 274 PMFL-GPLNPVNP 285
PM + GP P P
Sbjct: 189 PMGIPGPQGPPGP 201
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 92.4 bits (228), Expect = 2e-18
Identities = 91/251 (36%), Positives = 103/251 (41%), Gaps = 47/251 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSA-----GLPGA----------GLPST 675
P +G++GL PG P PG+P G PG P G+PGA G P
Sbjct: 330 PGGKGEQGL----PGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGI 385
Query: 676 GLPGSAITSAGLPGA-GMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFN-FPGNFGGSNA 732
G P G+PG G P A G P GE G P FPG G
Sbjct: 386 GGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGE 445
Query: 733 FGPP----IPPP-GLGGGAFGDARPGMPSV-------GNSGLPG-LGLD----VPGFGGG 775
GPP +P P G G A PG+P V G G+PG GL +PG GG
Sbjct: 446 VGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGG- 504
Query: 776 PNNLSGPSGFGGGPQNFGNGPGSLGGPPGF-GSGPPGLGSAPGHLGGPPAFGPGPGPGPG 834
P+ GP G G G L GPPGF G G PG+ G G P A GP PG
Sbjct: 505 PSGPIGPPGIPGP-----KGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGL- 558
Query: 835 PGPIHIGGPPG 845
PGP GPPG
Sbjct: 559 PGPPGPPGPPG 569
Score = 90.1 bits (222), Expect = 9e-18
Identities = 98/286 (34%), Positives = 110/286 (38%), Gaps = 68/286 (23%)
Query: 631 PPAQGKKGLKMP--VPGNPAVPGMPNAGLPGV-GLPSA-GLPGA----GLPSTGLPGSAI 682
P A G+ G + P VPG PG+P G PG G+P G PG GLP GLPG
Sbjct: 289 PGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLP--GLPGPP- 345
Query: 683 TSAGLPGAGMPS----------AGIPSAGGEEHAFLTVGSKEANN--------------G 718
GLPG G P G+P A G +G+ G
Sbjct: 346 ---GLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG 402
Query: 719 PP--FNFPGNFGGSNAFGPPIPP-----PGLGG-----GAFGDARP----GMPS------ 756
PP FPG G GP PP PGL G G G+ P G+P
Sbjct: 403 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG 462
Query: 757 -VGNSGLPGLGLDVPGFGG--GPNNLSGPSGFGGGPQNFG-NGPGSLGGPPGFGS--GPP 810
G G+PGL VPG G G + G G G P G GP GPPG G P
Sbjct: 463 EAGQKGVPGLP-GVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEP 521
Query: 811 GLGSAPGHLG-GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
GL PG G G P GP PG + G PG G PGP
Sbjct: 522 GLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGP 567
Score = 88.2 bits (217), Expect = 3e-17
Identities = 81/227 (35%), Positives = 96/227 (42%), Gaps = 54/227 (23%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNAGLPGV-GLPSA-GLPGAGLPSTGLPGSAITSAGLPGAG 691
QG +G P G P PG+P G+PG+ G P G PG G P G+PG G PGA
Sbjct: 120 QGPRGEPGP-RGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKP--GMPGMP----GKPGA- 171
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDAR 751
G+P A GE +G K G G GP PP
Sbjct: 172 ---MGMPGAKGE------IGQK-----------GEIGPMGIPGPQGPP----------GP 201
Query: 752 PGMPSVGNSGLPGL-GLDVPGFGGGPNNLSGPSGFGG--GPQNFGNGPGSLGGPPGFGSG 808
G+P +G G PGL G P GP L GP G G G + FG + G PG G
Sbjct: 202 HGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFG-----MPGAPGV-KG 255
Query: 809 PPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
PPG+ PG +G P PG PGP GP G + G+PGP
Sbjct: 256 PPGMHGPPGPVGLPGVGKPGVTGFPGP-----QGPLGKPGAPGEPGP 297
Score = 82.0 bits (201), Expect = 2e-15
Identities = 96/292 (32%), Positives = 109/292 (37%), Gaps = 75/292 (25%)
Query: 627 IEKNPPAQGKKGLKMP----VPGNPAVPGMPNA-------------GLPGV-------GL 662
I+ P QG G+ P +PG P GMP A G+PG GL
Sbjct: 145 IKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGL 204
Query: 663 PSAGLPGA-GLPSTGLPGSAITSAGLPGA-------GMPSAGIPSAGGEEHAFLTVGSKE 714
P G PG GLP P GLPG G G+P A G V
Sbjct: 205 PGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMPGAPG-------VKGPP 257
Query: 715 ANNGPP--FNFPGNFGGSNAFGPPIPPPGLGG-GAFGDARP----GMPSV-GNSGLPGLG 766
+GPP PG G G P P LG GA G+ P G+P V G G+PG+G
Sbjct: 258 GMHGPPGPVGLPG-VGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIG 316
Query: 767 LD-------VPGFGGGPNN-----LSGPSGFGG----------GPQNFGNGPGSLGGPPG 804
PGF GG L GP G G G + G PG+LG
Sbjct: 317 KPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGE 376
Query: 805 FGS-GPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
G G PG+G PG G P PGP PG I GP G G GP
Sbjct: 377 KGPIGAPGIGGPPGEPGLPGI----PGPMGPPGAIGFPGPKGEGGIVGPQGP 424
Score = 56.6 bits (135), Expect = 1e-07
Identities = 58/178 (32%), Positives = 67/178 (37%), Gaps = 25/178 (14%)
Query: 688 PGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAF 747
P M +P G E + + S GP G GPP PPGL G
Sbjct: 95 PAPRMGKEAVPKKGKE----IPLASLRGEQGPR-------GEPGPRGPP-GPPGLPGHGI 142
Query: 748 GDARPGMPSVGNSGLPGLGLD-VPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFG 806
+ G P G G PG+G +PG G P + P G Q GP + GP
Sbjct: 143 PGIK-GKP--GPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGPMGIPGP---- 195
Query: 807 SGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIKVQNMP 864
GPPG PG +G P GPG PGP GP G G GP K MP
Sbjct: 196 QGPPGPHGLPG-IGKPG----GPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMP 248
Score = 53.1 bits (126), Expect = 1e-06
Identities = 59/197 (29%), Positives = 75/197 (38%), Gaps = 41/197 (20%)
Query: 611 GREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPGM----PNAGLPG------- 659
G+ F+ V MR + +G+ G K VPG P VPG+ G+PG
Sbjct: 438 GKPGFLGEVGPPGMRGLPGPIGPKGEAGQK-GVPGLPGVPGLLGPKGEPGIPGDQGLQGP 496
Query: 660 VGLPSAGLPGAGLPSTGLPGSAITSAGLPGA-GMPSAGIPSAGGEEHAFLTVGSKEANNG 718
G+P G P + G+PG GLPG G P G P G +G
Sbjct: 497 PGIPGIGGPSGPIGPPGIPGPK-GEPGLPGPPGFPGIGKPGVAGL-------------HG 542
Query: 719 PPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNN 778
PP G A GP PGL G PG P+V P G +P G G +
Sbjct: 543 PP-------GKPGALGPQ-GQPGLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDG 594
Query: 779 LSGPSGFG------GGP 789
+ P +G GGP
Sbjct: 595 VKPPHAYGAKKGKNGGP 611
Score = 43.5 bits (101), Expect = 0.001
Identities = 36/114 (31%), Positives = 40/114 (35%), Gaps = 24/114 (21%)
Query: 175 VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVP-------PP------VPTLPPVP 221
+P P + PP IP P LP P P I P PP P P
Sbjct: 499 IPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGL 558
Query: 222 PVPPIPPVPSVPP--MTPLPPMS---------GMPPLNPPPVAPLPAGMNGSGA 264
P PP PP P PP M P PP G+ + PP G NG A
Sbjct: 559 PGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPHAYGAKKGKNGGPA 612
Score = 34.7 bits (78), Expect = 0.42
Identities = 36/112 (32%), Positives = 40/112 (35%), Gaps = 14/112 (12%)
Query: 175 VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPP 234
VP + P P IP L P IP I P P PP P P P
Sbjct: 469 VPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSG-------PIGPPGIPGPKGEP 521
Query: 235 MTPLPPMSGMPPLNPPPVAPLPAGMNG-SGAPMNLNNNLNPMFLGPLNPVNP 285
P PP G P + P V AG++G G P L P GP P P
Sbjct: 522 GLPGPP--GFPGIGKPGV----AGLHGPPGKPGALGPQGQPGLPGPPGPPGP 567
Score = 33.5 bits (75), Expect = 0.95
Identities = 33/133 (24%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 162 MGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLP---PMPSIPPIPVPPPVPTLP 218
MG + P M + P P A+P P+ S+ P P P
Sbjct: 70 MGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQGPRGEPG-P 128
Query: 219 PVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPA-----GMNGSGAPMNLNNNLN 273
PP PP P +P + P G P + P + +P GM G+ + +
Sbjct: 129 RGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIG 188
Query: 274 PMFL-GPLNPVNP 285
PM + GP P P
Sbjct: 189 PMGIPGPQGPPGP 201
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 91.3 bits (225), Expect = 4e-18
Identities = 101/258 (39%), Positives = 111/258 (43%), Gaps = 52/258 (20%)
Query: 628 EKNPPAQGKKGLKMPV--------PGNPAVPGMPNA-GLPGVGLPSAGLPGA-GLPSTGL 677
EK P G++G P PG VPG P G+PG S G PG+ G P G
Sbjct: 502 EKGPA--GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPG----SPGGPGSDGKP--GP 553
Query: 678 PGSAITSAGLPGAGMPSA--------GIPSAGGEEHAFLTVGSKEANNGP-PFNFPGNFG 728
PGS S G PG PS G P G + A G + GP P PG G
Sbjct: 554 PGSQGES-GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNG 612
Query: 729 GSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGG 788
+ GPP P G GG GD P P G GLPG G PG G P GP G G
Sbjct: 613 ETGPQGPP-GPTGPGGDK-GDTGPPGPQ-GLQGLPGTG-GPPGENGKPGE-PGPKGDAGA 667
Query: 789 PQNFGNGPGSLG--GPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGF 846
P PG G G PG GPPGL APG GG GP PGP G G GPPG
Sbjct: 668 P----GAPGGKGDAGAPG-ERGPPGLAGAPGLRGGA---GP-PGPEGGKGA---AGPPGP 715
Query: 847 ASSSGKPGPTVIKVQNMP 864
++G PG +Q MP
Sbjct: 716 PGAAGTPG-----LQGMP 728
Score = 87.4 bits (215), Expect = 6e-17
Identities = 96/300 (32%), Positives = 108/300 (36%), Gaps = 84/300 (28%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPN-------AGLPGV-GLPSAGLPGAGLPSTGLPGSAI 682
P QG G + P PG P + G P AG+PG GL A P + G PG
Sbjct: 371 PGPQGHAGAQGP-PGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLR- 428
Query: 683 TSAGLPG----------------AGMPSAGIPSAGGEEHAFLTVGSKEANNGP------- 719
AG PG AG+P G+P A GE+ + G AN P
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIP--GVPGAKGEDGKDGSPGEPGANGLPGAAGERG 486
Query: 720 ---------PFNFPGNFGGSNAFGPPIPP-----------------------PGLGGGAF 747
P PG G + G P P PG GG
Sbjct: 487 APGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPG 546
Query: 748 GDARPGMP-SVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFG--NGPGSLGGPPG 804
D +PG P S G SG PG P GP G GF G N G G GGP G
Sbjct: 547 SDGKPGPPGSQGESGRPG-----PPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGG 601
Query: 805 FG-SGPPGLGSAPGHLGGPPAFGPGPGPG----PGPGPIH----IGGPPGFASSSGKPGP 855
G GPPG G G P GPG G PGP + GGPPG G+PGP
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGP 661
Score = 87.4 bits (215), Expect = 6e-17
Identities = 92/263 (34%), Positives = 100/263 (38%), Gaps = 52/263 (19%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPN-------AGLPGVGLPSAGLPGAGLPSTGLPGSAIT 683
P G +G P+ G P G P GLPG+ P G PG TG PG A
Sbjct: 755 PGKDGPRGPTGPI-GPPGPAGQPGDKGEGGAPGLPGIAGPR-GSPGER-GETGPPGPA-- 809
Query: 684 SAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP--PG 741
G PGA + G P GE A ++ GPP G GGS GPP P G
Sbjct: 810 --GFPGAPGQN-GEPGGKGERGA----PGEKGEGGPP-GVAGPPGGSGPAGPPGPQGVKG 861
Query: 742 LGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGN-GPGSLG 800
G G G P G GLPG PG G P GP G G P G GP
Sbjct: 862 ERGSPGGPGAAGFP--GARGLPG----PPGSNGNP----GPPGPSGSPGKDGPPGPAGNT 911
Query: 801 GPPGFG--SGPPGLGSAPGHLGGPPAFGPGPGPGP-----------------GPGPIHIG 841
G PG SGP G PG G P A GP PGP PGP
Sbjct: 912 GAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSP 971
Query: 842 GPPGFASSSGKPGPTVIKVQNMP 864
GP G SGKPG + + P
Sbjct: 972 GPQGVKGESGKPGANGLSGERGP 994
Score = 86.7 bits (213), Expect = 9e-17
Identities = 98/285 (34%), Positives = 106/285 (37%), Gaps = 65/285 (22%)
Query: 630 NPPAQGKKGLKMPVPGNPAVPGMP--NAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGL 687
N A GK G + PG P G P N G P PG TG PG GL
Sbjct: 586 NDGAPGKNG-ERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQ-GL 643
Query: 688 PGAGMPSA-----GIPSAGGEEHAFLTVGSK-----EANNGPP-----------FNFPGN 726
PG G P G P G+ A G K GPP PG
Sbjct: 644 PGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGP 703
Query: 727 FGGSNAFGPPIPP-----PGLGG-----GAFGDARPGMPSVGNSGLPG-LGLD-VPGFGG 774
GG A GPP PP PGL G G G P G+ G PG G D VPG G
Sbjct: 704 EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPK----GDKGEPGGPGADGVPGKDG 759
Query: 775 --GPNNLSGPSGFGGGPQNFGNG--------------PGSLG--GPPGFGSGPPGLGSAP 816
GP GP G G P + G G PG G GPPG P G AP
Sbjct: 760 PRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPG----PAGFPGAP 815
Query: 817 GHLGGPPAFGPGPGPGPGP--GPIHIGGPPGFASSSGKPGPTVIK 859
G G P G PG GP + GPPG + +G PGP +K
Sbjct: 816 GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVK 860
Score = 86.7 bits (213), Expect = 9e-17
Identities = 93/246 (37%), Positives = 107/246 (43%), Gaps = 37/246 (15%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPG--AGLPSTGLPGSAITSAGLP 688
P A G KG PG PG+ AG PG+ AG PG G + G PG +AG P
Sbjct: 668 PGAPGGKG-DAGAPGERGPPGL--AGAPGLR-GGAGPPGPEGGKGAAGPPGPP-GAAGTP 722
Query: 689 GA-GMPS--AGIPSAGGEEHAFLTVGSKEANNGPPFN-FPGNFGGSNAFGPPIPPPGLGG 744
G GMP G+ S G + G K GP + PG G GP I PPG G
Sbjct: 723 GLQGMPGERGGLGSPGPK-------GDKGEPGGPGADGVPGKDGPRGPTGP-IGPPGPAG 774
Query: 745 --GAFGDA-RPGMPSV-GNSGLPG----LGLDVP-GFGGGPNNLSGPSGFG--GGPQNFG 793
G G+ PG+P + G G PG G P GF G P P G G G P G
Sbjct: 775 QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKG 834
Query: 794 NG--PGSLGGPPGFG-SGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSS 850
G PG G P G G +GPPG G G P GPG PG + GPPG +
Sbjct: 835 EGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPG----GPGAAGFPGARGLPGPPGSNGNP 890
Query: 851 GKPGPT 856
G PGP+
Sbjct: 891 GPPGPS 896
Score = 77.8 bits (190), Expect = 4e-14
Identities = 102/310 (32%), Positives = 113/310 (36%), Gaps = 89/310 (28%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA-GLPGV-------GLPS-AGLPGAGLP-----STG 676
P QG KG + PG P G P A GLPG G P +G PG P +TG
Sbjct: 854 PGPQGVKG-ERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTG 912
Query: 677 LPGSAITSAGLPGAGMPSA-GIPSAGGEEHAFLTVGSKEANN-----GPP---------- 720
PGS S AG P G P A G A +G GPP
Sbjct: 913 APGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPG 972
Query: 721 -------FNFPGNFGGSNAFGPPIPP--PGLGGGAFGDARPGMPSVGNSGLPGL------ 765
PG G S GPP P PGL G A R G P G+ GLPG
Sbjct: 973 PQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNP--GSDGLPGRDGSPGG 1030
Query: 766 --------GLDVPGFGG--GPNNLSGPSGFGG-----GPQNFGNGPGSLG--GPPGFGSG 808
PG G GP GP+G G GP PG G G PG G
Sbjct: 1031 KGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPG-PQG 1089
Query: 809 PPG-------LGSA--------PGHLGGPPAFGPG--------PGPGPGPGPIHIGGPPG 845
P G G+A PG+ G P + GP PGP GP+ GPPG
Sbjct: 1090 PRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPG 1149
Query: 846 FASSSGKPGP 855
+SG PGP
Sbjct: 1150 KDGTSGHPGP 1159
Score = 74.3 bits (181), Expect = 5e-13
Identities = 88/265 (33%), Positives = 98/265 (36%), Gaps = 57/265 (21%)
Query: 644 PGNPAVPGMPNAGLPGVGLPSA--GLPGAGLPS--------TGLPGSAITSAGLPG---- 689
PG+P G P G PG PS G PGA PS +G PG GLPG
Sbjct: 194 PGSPGYQGPP--GEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRP-GERGLPGPPGI 250
Query: 690 ---AGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFN----FPGNFGGSNAFGPPIPP--- 739
AG+P G P G G K P PG G GP P
Sbjct: 251 KGPAGIP--GFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGER 308
Query: 740 --PGLGG--------GAFG-DARPGMPSV-GNSGLPGLGLDVPGFGG--GPNNLSGPSGF 785
PGL G GA G D +PG P G +G PG PG G GP G +G
Sbjct: 309 GRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGS----PGAKGEVGPAGSPGSNGA 364
Query: 786 GG-----GPQNFGNGPGSLGGPPGFGSGPPGLGS-APGHLGGPPAFGPGPGPGPGPGPIH 839
G GPQ G GPPG P G G P + G P GP PGP
Sbjct: 365 PGQRGEPGPQGHAGAQGP-PGPPGINGSPGGKGEMGPAGIPGAPGLMGARGP---PGPAG 420
Query: 840 IGGPPGFASSSGKPGPTVIKVQNMP 864
G PG +G+PG K + P
Sbjct: 421 ANGAPGLRGGAGEPGKNGAKGEPGP 445
Score = 72.4 bits (176), Expect = 2e-12
Identities = 95/302 (31%), Positives = 103/302 (34%), Gaps = 92/302 (30%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA-GLPGV-GLPSAGLPGAGLPSTGLPG--------- 679
P QG +G K G+P PG+P G PG+ G P G PG S G PG
Sbjct: 99 PNGQGPQGPK----GDPGPPGIPGRNGDPGIPGQP--GSPG----SPGPPGICESCPTGP 148
Query: 680 -------------SAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGS--KEANNGPPFNFP 724
S + GL G P AG P G GS GPP P
Sbjct: 149 QNYSPQYDSYDVKSGVAVGGLAGYPGP-AGPPGPPGPPGTSGHPGSPGSPGYQGPPGE-P 206
Query: 725 GNFGGSNAFGPP--IPPPGLGGGAFGDARPGMPSVGNSGLPGLG-----LDVPGFGG--- 774
G G S GPP I P G G RPG P G GLPG +PGF G
Sbjct: 207 GQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRP--GERGLPGPPGIKGPAGIPGFPGMKG 264
Query: 775 --------------------------GPNNLSGPSGFGGGPQNFGNG--PGSLG------ 800
G N GP G G P G PG+ G
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDG 324
Query: 801 -----GPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIG--GPPGFASSSGKP 853
G PG GPPG PG G GP PG P G GP G A + G P
Sbjct: 325 ARGSDGQPG-PPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPP 383
Query: 854 GP 855
GP
Sbjct: 384 GP 385
Score = 68.2 bits (165), Expect = 3e-11
Identities = 85/268 (31%), Positives = 97/268 (36%), Gaps = 40/268 (14%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPN-AGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG 689
P A G G + P PG +PG+ AG PG G PG S GLPG + G
Sbjct: 983 PGANGLSGERGP-PGPQGLPGLAGTAGEPG----RDGNPG----SDGLPGRDGSPGGKGD 1033
Query: 690 AGMP-SAGIPSAGGEEHAFLTVG-----SKEANNGP--PFNFPGNFGGSNAFGPPIPPPG 741
G S G P A G VG +GP P PG G A GP P
Sbjct: 1034 RGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGD 1093
Query: 742 LG-----GGAFGDARPGMPSVGNSGLPGLGLDVPGFGG--------GPNNLSGPSGFGGG 788
G G A G P GN G PG PG G GP GP G G
Sbjct: 1094 KGETGERGAAGIKGHRGFP--GNPGAPGS----PGPAGQQGAIGSPGPAGPRGPVGPSGP 1147
Query: 789 PQNFGNG--PGSLGGP-PGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPG 845
P G PG +G P P G G +PGH G P GP PGP G + G
Sbjct: 1148 PGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIAG 1207
Query: 846 FASSSGKPGPTVIKVQNMPFTVSIDEIL 873
+ M F ++ DEI+
Sbjct: 1208 IGGEKAGGFAPYYGDEPMDFKINTDEIM 1235
Score = 56.6 bits (135), Expect = 1e-07
Identities = 59/164 (35%), Positives = 65/164 (39%), Gaps = 46/164 (28%)
Query: 735 PPIPPPGLGG-GAFGDARPGMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGF----GGG 788
P PP G G G GD PG P + G +G PG +PG G P + GP G G
Sbjct: 95 PTRPPNGQGPQGPKGD--PGPPGIPGRNGDPG----IPGQPGSPGS-PGPPGICESCPTG 147
Query: 789 PQNF-----------GNGPGSLGGPPGFGS-----GPPGLGSAPGHLGGPPAFGP----- 827
PQN+ G G L G PG GPPG PG G P GP
Sbjct: 148 PQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPG 207
Query: 828 --GPGPGPGP-GPIHIGGPPGFASSSGKPG---------PTVIK 859
GP PGP G I GP G SG+PG P IK
Sbjct: 208 QAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIK 251
Score = 38.5 bits (88), Expect = 0.029
Identities = 40/145 (27%), Positives = 47/145 (32%), Gaps = 41/145 (28%)
Query: 169 PTFSSTVPSTASPMNTVPPPPIPPIPAM---PSLPPMPSIPPIPVPPPV----PTLP--- 218
PT + P+ P P P IP P +P P P P PP + PT P
Sbjct: 92 PTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNY 151
Query: 219 ---------------------PVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPA 257
P P PP PP P P + P G P PP P A
Sbjct: 152 SPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGP--PGTSGHPGSPGSPGYQGPPGEPGQA 209
Query: 258 GMNGSGAPMNLNNNLNPMFLGPLNP 282
G +G P P +GP P
Sbjct: 210 GPSGPPGP--------PGAIGPSGP 226
>gi|148470406 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 90.1 bits (222), Expect = 9e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
Query: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
Query: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
Query: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
Score = 84.3 bits (207), Expect = 5e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R V + E++R +PP K + + PG PG
Sbjct: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
Score = 56.6 bits (135), Expect = 1e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ + M +R+I++
Sbjct: 346 SKDRANMQHRYIEL 359
Score = 47.4 bits (111), Expect = 6e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
+ ++ + + S +TEM +++ S
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEV 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 366 LMIQRYVEV 374
M RY+E+
Sbjct: 351 NMQHRYIEL 359
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 360 LKRNRMLMIQRYVEVSPATERQ 381
L +++ + RY+EV +++ +
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEE 190
Score = 38.1 bits (87), Expect = 0.038
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQN 81
I + + SS+ E+++
Sbjct: 173 KERIGHRYIEVFKSSQEEVRS 193
Score = 36.6 bits (83), Expect = 0.11
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
M + ++ + L L+S T N
Sbjct: 345 MSKDRANMQHRYIELFLNSTTGASN 369
Score = 36.2 bits (82), Expect = 0.15
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 605 HRKKLNGR--EAFVHVVT 620
R + R E F++ T
Sbjct: 348 DRANMQHRYIELFLNSTT 365
Score = 30.4 bits (67), Expect = 8.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
>gi|148470404 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 90.1 bits (222), Expect = 9e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
Query: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
Query: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
Query: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
Score = 84.3 bits (207), Expect = 5e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R V + E++R +PP K + + PG PG
Sbjct: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
Score = 56.6 bits (135), Expect = 1e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ + M +R+I++
Sbjct: 346 SKDRANMQHRYIEL 359
Score = 47.4 bits (111), Expect = 6e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
+ ++ + + S +TEM +++ S
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEV 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 366 LMIQRYVEV 374
M RY+E+
Sbjct: 351 NMQHRYIEL 359
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 360 LKRNRMLMIQRYVEVSPATERQ 381
L +++ + RY+EV +++ +
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEE 190
Score = 38.1 bits (87), Expect = 0.038
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQN 81
I + + SS+ E+++
Sbjct: 173 KERIGHRYIEVFKSSQEEVRS 193
Score = 36.6 bits (83), Expect = 0.11
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
M + ++ + L L+S T N
Sbjct: 345 MSKDRANMQHRYIELFLNSTTGASN 369
Score = 36.2 bits (82), Expect = 0.15
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 605 HRKKLNGR--EAFVHVVT 620
R + R E F++ T
Sbjct: 348 DRANMQHRYIELFLNSTT 365
Score = 30.4 bits (67), Expect = 8.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
>gi|148470402 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 90.1 bits (222), Expect = 9e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
Query: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
Query: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
Query: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
Score = 84.3 bits (207), Expect = 5e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R V + E++R +PP K + + PG PG
Sbjct: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
Score = 56.6 bits (135), Expect = 1e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ + M +R+I++
Sbjct: 346 SKDRANMQHRYIEL 359
Score = 47.4 bits (111), Expect = 6e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
+ ++ + + S +TEM +++ S
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEV 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 366 LMIQRYVEV 374
M RY+E+
Sbjct: 351 NMQHRYIEL 359
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 360 LKRNRMLMIQRYVEVSPATERQ 381
L +++ + RY+EV +++ +
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEE 190
Score = 38.1 bits (87), Expect = 0.038
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQN 81
I + + SS+ E+++
Sbjct: 173 KERIGHRYIEVFKSSQEEVRS 193
Score = 36.6 bits (83), Expect = 0.11
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
M + ++ + L L+S T N
Sbjct: 345 MSKDRANMQHRYIELFLNSTTGASN 369
Score = 36.2 bits (82), Expect = 0.15
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 605 HRKKLNGR--EAFVHVVT 620
R + R E F++ T
Sbjct: 348 DRANMQHRYIELFLNSTT 365
Score = 30.4 bits (67), Expect = 8.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
>gi|148470400 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 90.1 bits (222), Expect = 9e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
Query: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
Query: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
Query: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
Score = 84.3 bits (207), Expect = 5e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R V + E++R +PP K + + PG PG
Sbjct: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
Score = 56.6 bits (135), Expect = 1e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ + M +R+I++
Sbjct: 346 SKDRANMQHRYIEL 359
Score = 47.4 bits (111), Expect = 6e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
+ ++ + + S +TEM +++ S
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEV 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 366 LMIQRYVEV 374
M RY+E+
Sbjct: 351 NMQHRYIEL 359
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 360 LKRNRMLMIQRYVEVSPATERQ 381
L +++ + RY+EV +++ +
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEE 190
Score = 38.1 bits (87), Expect = 0.038
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQN 81
I + + SS+ E+++
Sbjct: 173 KERIGHRYIEVFKSSQEEVRS 193
Score = 36.6 bits (83), Expect = 0.11
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
M + ++ + L L+S T N
Sbjct: 345 MSKDRANMQHRYIELFLNSTTGASN 369
Score = 36.2 bits (82), Expect = 0.15
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 605 HRKKLNGR--EAFVHVVT 620
R + R E F++ T
Sbjct: 348 DRANMQHRYIELFLNSTT 365
Score = 30.4 bits (67), Expect = 8.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
>gi|148470397 heterogeneous nuclear ribonucleoprotein F [Homo
sapiens]
Length = 415
Score = 90.1 bits (222), Expect = 9e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
Query: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
Query: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
Query: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
Score = 84.3 bits (207), Expect = 5e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R V + E++R +PP K + + PG PG
Sbjct: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
Score = 56.6 bits (135), Expect = 1e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ + M +R+I++
Sbjct: 346 SKDRANMQHRYIEL 359
Score = 47.4 bits (111), Expect = 6e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
+ ++ + + S +TEM +++ S
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEV 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 366 LMIQRYVEV 374
M RY+E+
Sbjct: 351 NMQHRYIEL 359
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 360 LKRNRMLMIQRYVEVSPATERQ 381
L +++ + RY+EV +++ +
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEE 190
Score = 38.1 bits (87), Expect = 0.038
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQN 81
I + + SS+ E+++
Sbjct: 173 KERIGHRYIEVFKSSQEEVRS 193
Score = 36.6 bits (83), Expect = 0.11
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
M + ++ + L L+S T N
Sbjct: 345 MSKDRANMQHRYIELFLNSTTGASN 369
Score = 36.2 bits (82), Expect = 0.15
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 605 HRKKLNGR--EAFVHVVT 620
R + R E F++ T
Sbjct: 348 DRANMQHRYIELFLNSTT 365
Score = 30.4 bits (67), Expect = 8.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
>gi|4826760 heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
Length = 415
Score = 90.1 bits (222), Expect = 9e-18
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 38/211 (18%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSP 353
P + V + G+P+S DV++F + VH + GR +G V+ S
Sbjct: 5 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSE 64
Query: 354 QDTFEALKRNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRS 411
D ALK++R M RY+EV S TE WV ++ GP+
Sbjct: 65 DDVKMALKKDRESMGHRYIEVFKSHRTEMDWVL--------KHSGPN------------- 103
Query: 412 KSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
S GF V L+GLPF + ++ FF L+IV + I + P GK T
Sbjct: 104 ----------SADSANDGF-VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152
Query: 472 GEGFVEFRNEADYKAALCRHKQYMGNRFIQV 502
GE FV+F ++ + AL +HK+ +G+R+I+V
Sbjct: 153 GEAFVQFASQELAEKALGKHKERIGHRYIEV 183
Score = 84.3 bits (207), Expect = 5e-16
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDS--IYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V L+GLP+ + V +F I + + ++ Y G+ +GE FVE +E D K
Sbjct: 10 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKM 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+I+V K ++D + K S D +G V
Sbjct: 70 ALKKDRESMGHRYIEVF----KSHRTEMDWVLKHSGPNSADSAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF TK +++QF G+ + N + + VD G+ G+A VQF +++ A K+ H+
Sbjct: 115 -LRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R V + E++R +PP K + + PG PG
Sbjct: 174 ERIGHRYIEVFKSSQEEVRSY-SDPPL---KFMSVQRPGPYDRPG 214
Score = 56.6 bits (135), Expect = 1e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP++A + +FF L+ V ++I GP+G+ TGE VEF + AA+
Sbjct: 288 GHCVHMRGLPYKATENDIYNFFSPLNPVR--VHIEIGPDGRVTGEADVEFATHEEAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ + M +R+I++
Sbjct: 346 SKDRANMQHRYIEL 359
Score = 47.4 bits (111), Expect = 6e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++L+GLP D+++F S TI DG GVH + G + GEAF+ +++D ++ +
Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEMQNMIELS 86
+ ++ + + S +TEM +++ S
Sbjct: 72 KKDRESMGHRYIEVFKSHRTEMDWVLKHS 100
Score = 46.6 bits (109), Expect = 1e-04
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF + +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEV 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + ++ A+ ++R
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRA 350
Query: 366 LMIQRYVEV 374
M RY+E+
Sbjct: 351 NMQHRYIEL 359
Score = 42.4 bits (98), Expect = 0.002
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 302 DDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQDTFEA 359
+D +V + G+PF + ++ FF GL + + + L D G+ G V+F S + +A
Sbjct: 109 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 168
Query: 360 LKRNRMLMIQRYVEVSPATERQ 381
L +++ + RY+EV +++ +
Sbjct: 169 LGKHKERIGHRYIEVFKSSQEE 190
Score = 38.1 bits (87), Expect = 0.038
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGGVHI----VGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G+ + G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQN 81
I + + SS+ E+++
Sbjct: 173 KERIGHRYIEVFKSSQEEVRS 193
Score = 36.6 bits (83), Expect = 0.11
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT E+A
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLNPVRVHIEIGPDGRV------TGEADVEFATHEEAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSSKTEMQN 81
M + ++ + L L+S T N
Sbjct: 345 MSKDRANMQHRYIELFLNSTTGASN 369
Score = 36.2 bits (82), Expect = 0.15
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 604
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F ++A +
Sbjct: 290 CVHMRGLPYKATENDIYNFFS--PLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSK 347
Query: 605 HRKKLNGR--EAFVHVVT 620
R + R E F++ T
Sbjct: 348 DRANMQHRYIELFLNSTT 365
Score = 30.4 bits (67), Expect = 8.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 914
+ ++ +P+ + ++I +FF P V ++ G TGEA V F + +EA AA+
Sbjct: 291 VHMRGLPYKATENDIYNFFSPLN--PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 345
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 89.0 bits (219), Expect = 2e-17
Identities = 85/230 (36%), Positives = 98/230 (42%), Gaps = 28/230 (12%)
Query: 634 QGKKGLKMP--VPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAG 691
QG +G + P V G P PG A P + G PGA + G PG A + G PGA
Sbjct: 358 QGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAK-GANGAPGIA-GAPGFPGAR 415
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIP-----PPGLGGGA 746
PS G GG + N+G P PG+ G + A G P P PPG G
Sbjct: 416 GPS-GPQGPGGPP-------GPKGNSGEP-GAPGSKGDTGAKGEPGPVGVQGPPGPAGEE 466
Query: 747 FGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFG-GGPQNFGNGPGSLGGPPGF 805
G P G +GLPG PG GGP + P G GP+ GS G P
Sbjct: 467 GKRGARGEP--GPTGLPG----PPGERGGPGSRGFPGADGVAGPKGPAGERGSPG--PAG 518
Query: 806 GSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
G PG PG G P A G PG PGP GPPG A G+PGP
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLTGSPG-SPGPDGKTGPPGPAGQDGRPGP 567
Score = 85.9 bits (211), Expect = 2e-16
Identities = 97/285 (34%), Positives = 110/285 (38%), Gaps = 68/285 (23%)
Query: 628 EKNPPA-QGKKGLKMPVPGNPAVPGMPN----AGLPGVGLPSAGLPGAGLPST----GLP 678
E+ PP QG +GL PG +PGM +GL G + G P + G P
Sbjct: 243 ERGPPGPQGARGL----PGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAP 298
Query: 679 GSAITSAGLPGA-GMPSAGIPS-AGGEEHAFLTVGSKEANN--GPPFNFPGNFGGSNAFG 734
G + GLPG G P A P+ A G + A G GPP FPG G G
Sbjct: 299 GQ-MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPP-GFPGAVGAKGEAG 356
Query: 735 PPIP--------------PPGLGGGAFGDARPGMP----SVGNSGLPGLGLDVPGFGG-- 774
P P PPG G A PG + G +G PG+ PGF G
Sbjct: 357 PQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIA-GAPGFPGAR 415
Query: 775 GPNNLSGPSGFGGGPQNFGNG-----PGSLG--------GPPGFGSGPPGLGSAPGHLG- 820
GP SGP G GG P GN PGS G GP G GPPG G G
Sbjct: 416 GP---SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGV-QGPPGPAGEEGKRGA 471
Query: 821 ----------GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGP 855
GPP GPG PG + GP G A G PGP
Sbjct: 472 RGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGP 516
Score = 79.7 bits (195), Expect = 1e-14
Identities = 87/253 (34%), Positives = 100/253 (39%), Gaps = 54/253 (21%)
Query: 635 GKKGLKMPVPGNPAVPGMPN-AGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMP 693
G++G + P G+P G+P AG PG AG PG G+PG A P
Sbjct: 629 GERGEQGPA-GSPGFQGLPGPAGPPG----EAGKPG----EQGVPGDL--GAPGPSGARG 677
Query: 694 SAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP-----PGLGG---- 744
G P G + G + AN P GN G G P P PGL G
Sbjct: 678 ERGFPGERGVQGPPGPAGPRGANGAP-----GNDGAKGDAGAPGAPGSQGAPGLQGMPGE 732
Query: 745 ----------GAFGDARP----GMPSVGNSGLPGLG--LDVPGFGGGPNNL--SGPSGFG 786
G GDA P G P G G+ GL + PG G P + SGPSG
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGADGSP--GKDGVRGLTGPIGPPGPAGAPGDKGESGPSG-P 789
Query: 787 GGPQNFGNGPGSLG-----GPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIG 841
GP PG G GP GF +GPPG PG G P G GP PGP
Sbjct: 790 AGPTGARGAPGDRGEPGPPGPAGF-AGPPGADGQPGAKGEPGDAGAKGDAGP-PGPAGPA 847
Query: 842 GPPGFASSSGKPG 854
GPPG + G PG
Sbjct: 848 GPPGPIGNVGAPG 860
Score = 77.8 bits (190), Expect = 4e-14
Identities = 84/252 (33%), Positives = 96/252 (38%), Gaps = 48/252 (19%)
Query: 635 GKKGLKMPV--PGNPAVPGMPNAGLPGVGLPSA--GLPGAG-----LPSTGLPGSAITSA 685
G +G + P PG +PG P GLPG P G PG G S G +
Sbjct: 118 GPRGPRGPAGPPGRDGIPGQP--GLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGI 175
Query: 686 GLPGAGMPSA--GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGP--PIPPPG 741
+PG PS G+P G + GPP PG G S GP P PPG
Sbjct: 176 SVPGPMGPSGPRGLPGPPG-------APGPQGFQGPP-GEPGEPGASGPMGPRGPPGPPG 227
Query: 742 LGGGAFGDARPGMPS-------VGNSGLPGLGLDVPGFGG--GPNNLSGPSGFGG--GPQ 790
G +PG P G GLPG +PG G G + L G G G GP+
Sbjct: 228 KNGDDGEAGKPGRPGERGPPGPQGARGLPGTA-GLPGMKGHRGFSGLDGAKGDAGPAGPK 286
Query: 791 NFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGP--------GPGPGPGPGPIHIGG 842
PG G P GP GL PG G P A GP G PGP G
Sbjct: 287 GEPGSPGENGAPGQM--GPRGL---PGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAG 341
Query: 843 PPGFASSSGKPG 854
PPGF + G G
Sbjct: 342 PPGFPGAVGAKG 353
Score = 77.4 bits (189), Expect = 6e-14
Identities = 90/273 (32%), Positives = 105/273 (38%), Gaps = 62/273 (22%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA----GLPGV-GLPSAGLPGAGLPSTGLPGS--AIT 683
PP + K + VPG+ PG A G PG G+ P + G PG+ A
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKG 710
Query: 684 SAGLPGA----------GMP----SAGIPSAGGEEHAFLTVGSKEANNGP---------- 719
AG PGA GMP +AG+P G+ G K A+ P
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG---DAGPKGADGSPGKDGVRGLTG 767
Query: 720 ------PFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPS-VGNSGLPGLGLDVPGF 772
P PG+ G S GP P G G PG P G +G PG PG
Sbjct: 768 PIGPPGPAGAPGDKGESGPSGPA-GPTGARGAPGDRGEPGPPGPAGFAGPPGAD-GQPGA 825
Query: 773 GGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPG-FGS-GPPGLGSAPGHLGGPPAFG-PG- 828
G P + +G G G P GP GPPG G+ G PG A G G P A G PG
Sbjct: 826 KGEPGD-AGAKGDAGPP-----GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGA 879
Query: 829 ------PGPGPGPGPIHIGGPPGFASSSGKPGP 855
PGP GP GPPG A G GP
Sbjct: 880 AGRVGPPGPSGNAGP---PGPPGPAGKEGGKGP 909
Score = 72.0 bits (175), Expect = 2e-12
Identities = 87/258 (33%), Positives = 98/258 (37%), Gaps = 45/258 (17%)
Query: 631 PPAQGKKGLKMPV-----PGNPAVPGMPN-AGLPG-VGLPSA----GLPGAGLPS--TGL 677
P A G G K P PG G P AG PG GLP A G PG+ P TG
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGP 555
Query: 678 PGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP- 736
PG A G PG P P A G+ G K A P G G GPP
Sbjct: 556 PGPA-GQDGRPGPPGP----PGARGQAGVMGFPGPKGAAGEP-----GKAGERGVPGPPG 605
Query: 737 -IPPPGLGG--GAFGDARPGMP-----------SVGNSGLPGLG-----LDVPGFGGGPN 777
+ P G G GA G P P S G GLPG PG G P
Sbjct: 606 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG 665
Query: 778 NLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGP 837
+L P G + G + GPPG +GP G APG+ G G PG P
Sbjct: 666 DLGAPGPSGARGERGFPGERGVQGPPG-PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 724
Query: 838 IHIGGPPGFASSSGKPGP 855
+ G PG ++G PGP
Sbjct: 725 -GLQGMPGERGAAGLPGP 741
Score = 72.0 bits (175), Expect = 2e-12
Identities = 93/268 (34%), Positives = 99/268 (36%), Gaps = 54/268 (20%)
Query: 630 NPPAQGKKGLKMPVPGNPAVPGMPN----AGLPGV----GLPSAGLPG-AGLPSTGLPGS 680
+P A G G PG P G+ GLPG G P GLPG +G P P
Sbjct: 936 SPGADGPAG----APGTPGPQGIAGQRGVVGLPGQRGERGFP--GLPGPSGEPGKQGPSG 989
Query: 681 AITSAGLPGAGMPS--AGIPSAGGEEHAFLTVGSKEANNGP----------PFNFPGNFG 728
A G PG P AG P G E A GS + P P PG G
Sbjct: 990 ASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPG 1049
Query: 729 GSNAFGPPIP-----------PPGLGG-----GAFGDARPGMPSVGNSGLPGLGLDVPGF 772
A GP P P G G GA G A P P G+ G G D G
Sbjct: 1050 APGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPR-GDKGETGEQGD-RGI 1107
Query: 773 GG--GPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGH---LGGPPAFGP 827
G G + L GP G G P GP GP G GPPG APG G P GP
Sbjct: 1108 KGHRGFSGLQGPPGPPGSPGE--QGPSGASGPAG-PRGPPGSAGAPGKDGLNGLPGPIGP 1164
Query: 828 GPGPGPGPGPIHIGGPPGFASSSGKPGP 855
PGP G GPPG G PGP
Sbjct: 1165 -PGPRGRTGDAGPVGPPGPPGPPGPPGP 1191
Score = 68.2 bits (165), Expect = 3e-11
Identities = 89/299 (29%), Positives = 101/299 (33%), Gaps = 84/299 (28%)
Query: 630 NPPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLP-----STGLPGSAITS 684
NP A G+ G K G P + G P G PG PS G G G P ++G PG+ +
Sbjct: 387 NPGADGQPGAK-GANGAPGIAGAP--GFPGARGPS-GPQGPGGPPGPKGNSGEPGAPGSK 442
Query: 685 AGLPGAGMPSA----GIPSAGGEEHAFLTVGSKEANNGP-PFNFPGNFG-----GSNAF- 733
G P G P GEE G + A P P PG G GS F
Sbjct: 443 GDTGAKGEPGPVGVQGPPGPAGEE------GKRGARGEPGPTGLPGPPGERGGPGSRGFP 496
Query: 734 ------GPPIPP-----PGLGGGAFGDARPGMPSVGNSGLPGL-GLDVPGFGGGPNNLSG 781
GP P PG G G P G +GLPG GL GP+ +G
Sbjct: 497 GADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP--GEAGLPGAKGLTGSPGSPGPDGKTG 554
Query: 782 PSGFGG-----------------------GPQNFGNGPGSLG-----GPPGF-------- 805
P G G GP+ PG G GPPG
Sbjct: 555 PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 614
Query: 806 ---GSGPPGLGSAPGHLG-----GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPGPT 856
GPPG G G G P F PGP PG G G G PGP+
Sbjct: 615 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPS 673
Score = 65.5 bits (158), Expect = 2e-10
Identities = 98/324 (30%), Positives = 105/324 (32%), Gaps = 118/324 (36%)
Query: 631 PPAQGKKG-LKMPVPGNPAVPGMP--NAGLPGV--GLPSAGLPGAGLPSTGLPGSAITSA 685
P G KG P P PA P P N G PG SAG PGA TG PG+A
Sbjct: 829 PGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGA----TGFPGAA-GRV 883
Query: 686 GLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP------ 739
G PG +AG P G KE GP G G GPP PP
Sbjct: 884 GPPGPS-GNAGPPGPPGP-------AGKEGGKGPRGE-TGPAGRPGEVGPPGPPGPAGEK 934
Query: 740 --PGLGGGAFGDARPGMPSV-------------GNSGLPGLGLDVPGFGGGPNNLSGPSG 784
PG G A PG + G G PGL PG G P GPSG
Sbjct: 935 GSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGL----PGPSGEPGK-QGPSG 989
Query: 785 FGG--GPQNFGNGPGSLGGPPGFGS--GPPGLGSAPGHLGGPPAFG-------------- 826
G GP GP L GPPG G PG +PG G P A G
Sbjct: 990 ASGERGPPG-PMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 827 -----PGP-------------GPGPGPGPI------------------------------ 838
PGP GP GP+
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108
Query: 839 -HIG-----GPPGFASSSGKPGPT 856
H G GPPG S G+ GP+
Sbjct: 1109 GHRGFSGLQGPPGPPGSPGEQGPS 1132
Score = 61.2 bits (147), Expect = 4e-09
Identities = 50/144 (34%), Positives = 56/144 (38%), Gaps = 22/144 (15%)
Query: 725 GNFGGSNAFGPPIPP--------PGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGP 776
G+ G GP PP PGL G PG P +G + P L G
Sbjct: 115 GDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGG 174
Query: 777 NNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGP-GPGPGPGP 835
++ GP G +GP L GPPG GP G PG G P A GP GP PGP
Sbjct: 175 ISVPGPMG--------PSGPRGLPGPPG-APGPQGFQGPPGEPGEPGASGPMGPRGPPGP 225
Query: 836 ----GPIHIGGPPGFASSSGKPGP 855
G G PG G PGP
Sbjct: 226 PGKNGDDGEAGKPGRPGERGPPGP 249
Score = 60.1 bits (144), Expect = 9e-09
Identities = 83/249 (33%), Positives = 91/249 (36%), Gaps = 58/249 (23%)
Query: 631 PPAQGKKGLKMPV--------PGNPAVPGMPNA----GLPGVGLPSAGLPGAGLPSTGLP 678
P GK+G K P PG PG P G PG P AG PG P G+
Sbjct: 898 PGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGP-AGAPGTPGPQ-GIA 955
Query: 679 GSAITSAGLPGA----GMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFG 734
G GLPG G P G+P GE GP G S G
Sbjct: 956 GQRGV-VGLPGQRGERGFP--GLPGPSGEP----------GKQGPS-------GASGERG 995
Query: 735 PPIP--PPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNF 792
PP P PPGL G R G P G G PG PG G +GP+G
Sbjct: 996 PPGPMGPPGLAGPPGESGREGAP--GAEGSPGRD-GSPG-AKGDRGETGPAG-------- 1043
Query: 793 GNGPGSLGGPPGFGS-GPPGLGSAPGHLGGPPAFGPGP-GPGPGPGPIHIGGPPGFASSS 850
PG+ G P G GP G G G PA GP GP GP GP G +
Sbjct: 1044 --PPGAPGAPGAPGPVGPAGKSGDRGETG--PAGPAGPVGPVGARGPAGPQGPRGDKGET 1099
Query: 851 GKPGPTVIK 859
G+ G IK
Sbjct: 1100 GEQGDRGIK 1108
Score = 35.4 bits (80), Expect = 0.25
Identities = 37/128 (28%), Positives = 40/128 (31%), Gaps = 11/128 (8%)
Query: 181 PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPV-----PTLPPVPPVPPIPPVPSVPPM 235
P PP IP P LP P P P PP + P L + PM
Sbjct: 122 PRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPM 181
Query: 236 TPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVK 295
P SG L PP AP P G G PM GP P P N
Sbjct: 182 GP----SGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPM--GPRGPPGPPGKNGDDGEA 235
Query: 296 PLPINPDD 303
P P +
Sbjct: 236 GKPGRPGE 243
Score = 30.8 bits (68), Expect = 6.1
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 176 PSTAS-PMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPP 234
PS AS P PP P L +P P+ PP P P PP P PP
Sbjct: 1131 PSGASGPAGPRGPPGSAGAPGKDGLNGLPG----PIGPPGPRGRTGDAGPVGPPGPPGPP 1186
Query: 235 MTPLPPMSG 243
P PP +G
Sbjct: 1187 GPPGPPSAG 1195
>gi|126352446 elastin isoform d precursor [Homo sapiens]
Length = 711
Score = 89.0 bits (219), Expect = 2e-17
Identities = 83/248 (33%), Positives = 103/248 (41%), Gaps = 66/248 (26%)
Query: 649 VPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFL 708
VPG P G VG+P AG+PG G+P G+P + AG+PGA +P P A +
Sbjct: 328 VPGGPGFGPGVVGVPGAGVPGVGVPGAGIP--VVPGAGIPGAAVPGVVSPEAAAK----- 380
Query: 709 TVGSKEANNGPPFNFPG-NFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGL 767
+K A G PG GG IP G+G G F PG VG G+PG+
Sbjct: 381 -AAAKAAKYGAR---PGVGVGG-------IPTYGVGAGGF----PGF-GVGVGGIPGVA- 423
Query: 768 DVPGFGGGPNNLSGPSGFGGGPQ-----------------------------NFGNGPGS 798
VPG GG P + G G G P+ FG PG
Sbjct: 424 GVPGVGGVP-GVGGVPGVGISPEAQAAAAAKAAKYGVGTPAAAAAKAAAKAAQFGLVPG- 481
Query: 799 LGGPPGFGSGP-----PGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKP 853
+G PG G P PG+G APG +G P G PG G PG GP G A+++
Sbjct: 482 VGVAPGVGVAPGVGVAPGVGLAPG-VGVAPGVGVAPGVGVAPGI----GPGGVAAAAKSA 536
Query: 854 GPTVIKVQ 861
K Q
Sbjct: 537 AKVAAKAQ 544
Score = 68.2 bits (165), Expect = 3e-11
Identities = 82/289 (28%), Positives = 106/289 (36%), Gaps = 72/289 (24%)
Query: 632 PAQGKKGLKMPVPGNPAVPG--MPNAGLPGVGLPSA--------------------GLPG 669
P G G+ +P G P VPG +P A +PGV P A G+P
Sbjct: 342 PGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPT 401
Query: 670 AGLPSTGLPGSAITSAGLPG-AGMPSAG-IPSAGG--------EEHAFLTVGSKEANNGP 719
G+ + G PG + G+PG AG+P G +P GG E A + + G
Sbjct: 402 YGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAAAKAAKYGVGT 461
Query: 720 PFNFPGNFGGSNAFGPPIP----PPGLGGGAFGDARPGM---PSVGNSGLPGLGLDVPGF 772
P A +P PG+G PG+ P VG + PG+G+ PG
Sbjct: 462 PAAAAAKAAAKAAQFGLVPGVGVAPGVGVAPGVGVAPGVGLAPGVGVA--PGVGV-APGV 518
Query: 773 GGGPN--------------------NLSGPSGFGGGPQNFGNGPGSLG-----GPPGFG- 806
G P L +G G G G G G G G PG G
Sbjct: 519 GVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGLGV 578
Query: 807 -SGPPGLGSAPGHLGGPPAFGPG---PGPGPGPGPIHIGGPPGFASSSG 851
+G PG G+ PG L A G PG G G + G PG +G
Sbjct: 579 GAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAG 627
Score = 67.0 bits (162), Expect = 8e-11
Identities = 67/213 (31%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 645 GNPAVPGMPNAGLP--GVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGG 702
G A P +P A +P G G+ +PG GLP PG + A PG G+ G+P+ G
Sbjct: 122 GVSAAPSVPGAVVPQPGAGVKPGKVPGVGLPGV-YPGGVLPGARFPGVGV-LPGVPTGAG 179
Query: 703 EEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGL 762
+ VG A G P G FG P P LG + P +P G GL
Sbjct: 180 VKPKAPGVGGAFA--GIP--------GVGPFGGPQPGVPLG---YPIKAPKLP--GGYGL 224
Query: 763 PGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPG-----FGSGPPGLGSAPG 817
P +P +G GP ++G +G G P G GP + FG+G G+ G
Sbjct: 225 PYTTGKLP-YGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVG 283
Query: 818 HLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSS 850
G P PG PG G I G P A+++
Sbjct: 284 GAGVPGV----PGAIPGIGGIAGVGTPAAAAAA 312
Score = 58.9 bits (141), Expect = 2e-08
Identities = 69/232 (29%), Positives = 88/232 (37%), Gaps = 40/232 (17%)
Query: 633 AQGKKGLKMPVPGNPAVPGMPNAG-LPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAG 691
A G G + V G P V G+P G +PGVG G+PG G+ S +A A G G
Sbjct: 406 AGGFPGFGVGVGGIPGVAGVPGVGGVPGVG----GVPGVGI-SPEAQAAAAAKAAKYGVG 460
Query: 692 MPSAGIPSAGGEEHAFLTVGSKEANNG----------PPFNFPGNFGGSNAFGPPIPP-- 739
P+A A + F V G P G + G + P
Sbjct: 461 TPAAAAAKAAAKAAQFGLVPGVGVAPGVGVAPGVGVAPGVGLAPGVGVAPGVG--VAPGV 518
Query: 740 ---PGLGGGAFGDARPGMPSVG-----------NSGLPGLGLDV--PGFGGGPNNLSGPS 783
PG+G G A V +G+PGLG+ V PG G G + G
Sbjct: 519 GVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAG-VPG-L 576
Query: 784 GFGGGPQNFGNGPGSLGGPPG--FGSGPPGLGSAPGHLGGPPAFGPGPGPGP 833
G G G FG PG+L +G+ PG+ G LGG G G GP
Sbjct: 577 GVGAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAGP 628
Score = 58.2 bits (139), Expect = 4e-08
Identities = 82/262 (31%), Positives = 109/262 (41%), Gaps = 40/262 (15%)
Query: 646 NPAVPGMPNAGLPGVGLPSAGL-PGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEE 704
+P+ PG +PG G+P PGAGL + G G A+ G P +P G+ AG
Sbjct: 22 HPSRPGGVPGAIPG-GVPGGVFYPGAGLGALG--GGALGPGGKPLKPVP-GGLAGAG--- 74
Query: 705 HAFLTVGSKEANNGPPFNFPGNFG-GSNAFGPPIPPPGLGGGAFGDARPGMPSVGNS--- 760
+G+ A P PG + A+ GLGG PG+ +G S
Sbjct: 75 -LGAGLGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLGG------VPGVGGLGVSAAP 127
Query: 761 GLPGLGLDVPGFGGGPNNLSG---PSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPG 817
+PG + PG G P + G P + GG PG +G PG +G APG
Sbjct: 128 SVPGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPG-VGVLPGVPTGAGVKPKAPG 186
Query: 818 HLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGK-PGPTVIKVQNMPFTVSIDEILDFF 876
+GG A PG GP GP P G P G+ + K PG +P+T L +
Sbjct: 187 -VGGAFAGIPGVGPFGGPQP---GVPLGYPIKAPKLPGG-----YGLPYTTG---KLPYG 234
Query: 877 YGYQVIPGSVCLKYNEKGMPTG 898
YG PG V + G PTG
Sbjct: 235 YG----PGGVAGAAGKAGYPTG 252
Score = 47.4 bits (111), Expect = 6e-05
Identities = 56/177 (31%), Positives = 70/177 (39%), Gaps = 46/177 (25%)
Query: 665 AGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFP 724
AG+PG G+ G+PG + AG+PG G+ AG+P G A +K A G P
Sbjct: 553 AGIPGLGV-GVGVPGLGV-GAGVPGLGV-GAGVPGFGAVPGAL--AAAKAAKYGAAV--P 605
Query: 725 GNFGGSNAFGPPIPPPGLGG-------------------GAFGDARPGMPSVGNSGLPGL 765
G GG A G P G+ G G G A G VG G+PG+
Sbjct: 606 GVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGV 665
Query: 766 GLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGP--PG---LGSAPG 817
G G GG P + + G + PGFG P PG LG A G
Sbjct: 666 G----GLGGIPPAAAAKAAKYG-----------VAARPGFGLSPIFPGGACLGKACG 707
Score = 33.1 bits (74), Expect = 1.2
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 16/102 (15%)
Query: 648 AVPGMPNA--GLPGVGLPSAGLPGAGLPSTGLPGSA---------ITSAGLPGAGMPSAG 696
AVPG+ L GVG+P G+ GAG + A + +AGL G G+ G
Sbjct: 603 AVPGVLGGLGALGGVGIPG-GVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLG 661
Query: 697 IPSAGGEEHAFLTVGSKEANNG----PPFNFPGNFGGSNAFG 734
+P GG +K A G P F F G G
Sbjct: 662 VPGVGGLGGIPPAAAAKAAKYGVAARPGFGLSPIFPGGACLG 703
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 89.0 bits (219), Expect = 2e-17
Identities = 83/248 (33%), Positives = 103/248 (41%), Gaps = 66/248 (26%)
Query: 649 VPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFL 708
VPG P G VG+P AG+PG G+P G+P + AG+PGA +P P A +
Sbjct: 323 VPGGPGFGPGVVGVPGAGVPGVGVPGAGIP--VVPGAGIPGAAVPGVVSPEAAAK----- 375
Query: 709 TVGSKEANNGPPFNFPG-NFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGL 767
+K A G PG GG IP G+G G F PG VG G+PG+
Sbjct: 376 -AAAKAAKYGAR---PGVGVGG-------IPTYGVGAGGF----PGF-GVGVGGIPGVA- 418
Query: 768 DVPGFGGGPNNLSGPSGFGGGPQ-----------------------------NFGNGPGS 798
VPG GG P + G G G P+ FG PG
Sbjct: 419 GVPGVGGVP-GVGGVPGVGISPEAQAAAAAKAAKYGVGTPAAAAAKAAAKAAQFGLVPG- 476
Query: 799 LGGPPGFGSGP-----PGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKP 853
+G PG G P PG+G APG +G P G PG G PG GP G A+++
Sbjct: 477 VGVAPGVGVAPGVGVAPGVGLAPG-VGVAPGVGVAPGVGVAPGI----GPGGVAAAAKSA 531
Query: 854 GPTVIKVQ 861
K Q
Sbjct: 532 AKVAAKAQ 539
Score = 68.2 bits (165), Expect = 3e-11
Identities = 82/289 (28%), Positives = 106/289 (36%), Gaps = 72/289 (24%)
Query: 632 PAQGKKGLKMPVPGNPAVPG--MPNAGLPGVGLPSA--------------------GLPG 669
P G G+ +P G P VPG +P A +PGV P A G+P
Sbjct: 337 PGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGVGGIPT 396
Query: 670 AGLPSTGLPGSAITSAGLPG-AGMPSAG-IPSAGG--------EEHAFLTVGSKEANNGP 719
G+ + G PG + G+PG AG+P G +P GG E A + + G
Sbjct: 397 YGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAAAKAAKYGVGT 456
Query: 720 PFNFPGNFGGSNAFGPPIP----PPGLGGGAFGDARPGM---PSVGNSGLPGLGLDVPGF 772
P A +P PG+G PG+ P VG + PG+G+ PG
Sbjct: 457 PAAAAAKAAAKAAQFGLVPGVGVAPGVGVAPGVGVAPGVGLAPGVGVA--PGVGV-APGV 513
Query: 773 GGGPN--------------------NLSGPSGFGGGPQNFGNGPGSLG-----GPPGFG- 806
G P L +G G G G G G G G PG G
Sbjct: 514 GVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAGVPGLGV 573
Query: 807 -SGPPGLGSAPGHLGGPPAFGPG---PGPGPGPGPIHIGGPPGFASSSG 851
+G PG G+ PG L A G PG G G + G PG +G
Sbjct: 574 GAGVPGFGAVPGALAAAKAAKYGAAVPGVLGGLGALGGVGIPGGVVGAG 622
Score = 67.0 bits (162), Expect = 8e-11
Identities = 70/223 (31%), Positives = 88/223 (39%), Gaps = 51/223 (22%)
Query: 638 GLKMPVPGNPAVPG-MPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGL----PGAGM 692
G +P PG PG +P GLPGV P LPGA P G+ T AG+ PG G
Sbjct: 126 GAVVPQPGAGVKPGKVPGVGLPGV-YPGGVLPGARFPGVGVLPGVPTGAGVKPKAPGVGG 184
Query: 693 PSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARP 752
AGIP G FGG P PG+ G + P
Sbjct: 185 AFAGIPGVGP------------------------FGG--------PQPGVPLG-YPIKAP 211
Query: 753 GMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLGGPPG-----FGS 807
+P G GLP +P +G GP ++G +G G P G GP + FG+
Sbjct: 212 KLP--GGYGLPYTTGKLP-YGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGA 268
Query: 808 GPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSS 850
G G+ G G P PG PG G I G P A+++
Sbjct: 269 GAAGVLPGVGGAGVPGV----PGAIPGIGGIAGVGTPAAAAAA 307
Score = 58.9 bits (141), Expect = 2e-08
Identities = 61/184 (33%), Positives = 74/184 (40%), Gaps = 25/184 (13%)
Query: 665 AGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFP 724
AG+PG G+ G+PG + AG+PG G+ AG+P G A +K A G P
Sbjct: 548 AGIPGLGV-GVGVPGLGV-GAGVPGLGV-GAGVPGFGAVPGAL--AAAKAAKYGAAV--P 600
Query: 725 GNFGGSNAFGPPIPPPGLGGG------AFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNN 778
G GG A G P G+ G A A G G GLG G G G
Sbjct: 601 GVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLG----GLGVGGLG 656
Query: 779 LSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPI 838
+ G G GG P P + +G+ GLG G G P G PG G PI
Sbjct: 657 VPGVGGLGGIP------PAAAAKAAKYGAA--GLGGVLGGAGQFPLGGVAARPGFGLSPI 708
Query: 839 HIGG 842
GG
Sbjct: 709 FPGG 712
Score = 57.8 bits (138), Expect = 5e-08
Identities = 73/243 (30%), Positives = 90/243 (37%), Gaps = 46/243 (18%)
Query: 635 GKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPS 694
G K LK PVPG G+ AGL G GL P P +PG +A A
Sbjct: 59 GGKPLK-PVPG-----GLAGAGL-GAGL--GAFPAVTFPGALVPGGVADAAAAYKAAKAG 109
Query: 695 AGIPSAGGEEHAFLTVGSKEANNG--------PPFNFPGNFGGSNAFGPPIPP----PGL 742
AG+ G ++ G+ G P PG + G G P PG+
Sbjct: 110 AGLGGVPGVGGLGVSAGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPGVGVLPGV 169
Query: 743 GGGAFGDARPGMPSVGN--SGLPGLGLDVPGFGGGPNNLSG--------PSGFG----GG 788
GA +P P VG +G+PG+G P G P G P G+G G
Sbjct: 170 PTGA--GVKPKAPGVGGAFAGIPGVG---PFGGPQPGVPLGYPIKAPKLPGGYGLPYTTG 224
Query: 789 PQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPA-----FGPG-PGPGPGPGPIHIGG 842
+G GPG + G G P G G P A FG G G PG G + G
Sbjct: 225 KLPYGYGPGGVAGAAGKAGYPTGTGVGPQAAAAAAAKAAAKFGAGAAGVLPGVGGAGVPG 284
Query: 843 PPG 845
PG
Sbjct: 285 VPG 287
Score = 57.0 bits (136), Expect = 8e-08
Identities = 82/260 (31%), Positives = 103/260 (39%), Gaps = 41/260 (15%)
Query: 646 NPAVPGMPNAGLPGVGLPSAGL-PGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEE 704
+P+ PG +PG G+P PGAGL + G G A+ G P +P GG
Sbjct: 22 HPSRPGGVPGAIPG-GVPGGVFYPGAGLGALG--GGALGPGGKPLKPVP-------GGLA 71
Query: 705 HAFLTVGSKEANNGPPFNFPGNF-GGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGL- 762
A L G P FPG G A G G G+P VG G+
Sbjct: 72 GAGLGAG---LGAFPAVTFPGALVPGGVADAAAAYKAAKAGAGLG----GVPGVGGLGVS 124
Query: 763 PGLGLDVPGFGGGPNNLSG---PSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHL 819
G + PG G P + G P + GG PG +G PG +G APG +
Sbjct: 125 AGAVVPQPGAGVKPGKVPGVGLPGVYPGGVLPGARFPG-VGVLPGVPTGAGVKPKAPG-V 182
Query: 820 GGPPAFGPGPGPGPGPGPIHIGGPPGFASSSGK-PGPTVIKVQNMPFTVSIDEILDFFYG 878
GG A PG GP GP P G P G+ + K PG +P+T L + YG
Sbjct: 183 GGAFAGIPGVGPFGGPQP---GVPLGYPIKAPKLPGG-----YGLPYTTG---KLPYGYG 231
Query: 879 YQVIPGSVCLKYNEKGMPTG 898
PG V + G PTG
Sbjct: 232 ----PGGVAGAAGKAGYPTG 247
Score = 35.4 bits (80), Expect = 0.25
Identities = 38/117 (32%), Positives = 48/117 (41%), Gaps = 23/117 (19%)
Query: 648 AVPGMPNA--GLPGVGLPSAGLPGAGLPSTGLPGSA---------ITSAGLPGAGMPSAG 696
AVPG+ L GVG+P G+ GAG + A + +AGL G G+ G
Sbjct: 598 AVPGVLGGLGALGGVGIPG-GVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLG 656
Query: 697 IPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGGGAFGDARPG 753
+P GG +K A G G GG+ F LGG A ARPG
Sbjct: 657 VPGVGGLGGIPPAAAAKAAKYGAA-GLGGVLGGAGQF-------PLGGVA---ARPG 702
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 89.0 bits (219), Expect = 2e-17
Identities = 101/285 (35%), Positives = 116/285 (40%), Gaps = 67/285 (23%)
Query: 611 GREAFVHVVTLEDMREIEKNPPAQGKKG--LKMPVP-------GNPAVPGMPNA-GLPGV 660
G + V ++ M++ PP + KG L+MP+P G P PG P G PG
Sbjct: 34 GAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGP 93
Query: 661 -GLPSAGLPGAGLPST-GLPGSAITSAGLPG-AGMPSAGIPSAGGEEHAFLTVGSKEANN 717
G P G PG G P G PG A G PG + M AG P G+
Sbjct: 94 PGFP--GKPGMGKPGLHGQPGPA----GPPGFSRMGKAGPPGLPGKV------------- 134
Query: 718 GPPFN-----FPGNFGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGF 772
GPP PG G GPP PPGL G + G PG P G G+PG PGF
Sbjct: 135 GPPGQPGLRGEPGIRGDQGLRGPP-GPPGLPGPS-GITIPGKP--GAQGVPG----PPGF 186
Query: 773 GG--GPNNLSGPSGFGG--GPQNFGN-------GPGSLGGPPGF----GSGPPGLGSAPG 817
G GP GP G G G G G G GPPG G G PGL PG
Sbjct: 187 QGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPG 246
Query: 818 HLGGPPAFGPG--PGPGPGPGPIHIGGPP-----GFASSSGKPGP 855
G GP PGP PG + GPP G ++G PGP
Sbjct: 247 APGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGP 291
Score = 85.5 bits (210), Expect = 2e-16
Identities = 100/278 (35%), Positives = 109/278 (39%), Gaps = 73/278 (26%)
Query: 627 IEKNPPAQGKKGLK--MPVPGNPAVPGMPN----AGLPGVGLPSAGLPGA----GLPST- 675
I P AQG G PG PG P G GVG P GLPGA G P
Sbjct: 171 IPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQP--GLPGAPGQGGAPGPP 228
Query: 676 GLPGSAITSAGLPGAGMPSA-GIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFG 734
GLPG A G G P G+P A G++ +GPP PG G A G
Sbjct: 229 GLPGPA-------GLGKPGLDGLPGAPGDK----------GESGPP-GVPGPRGEPGAVG 270
Query: 735 PPIPPPGLGG----GAFGDARPGMPS-----VGNSGLPGL----GLDVPGFGG-----GP 776
P PPG+ G GA G P PS G G PGL G +PG G GP
Sbjct: 271 PK-GPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGP 329
Query: 777 NNLSGPSGFGGGPQNFGN----GPGSLGGPPGFGSGPPGLGSAPGHLGGP-PAFGPGPGP 831
+ G G G P G GP LGGPPG PG PG G P P GPG
Sbjct: 330 AGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGL----PGSAGLPGRRGPPGPKGEAGPGG 385
Query: 832 GPG-------PGPIHIGGPPG------FASSSGKPGPT 856
PG GP + G PG + G PGPT
Sbjct: 386 PPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPT 423
Score = 82.8 bits (203), Expect = 1e-15
Identities = 100/288 (34%), Positives = 115/288 (39%), Gaps = 69/288 (23%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA-------GLPGVGLP-SAGLPGAGLPS--TGLPGS 680
P A G KG P PG P G P A G+ GVG+P +AGLPG PS G PG+
Sbjct: 245 PGAPGDKGESGP-PGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGT 303
Query: 681 -------AITSAGLPGAGMPS-----AGIPSAGGE-----EHAFLTVGSKEANNGPPFNF 723
T G+PG P AG+P G+ E + GPP
Sbjct: 304 RGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPP-GL 362
Query: 724 PGNFGGSNAFGPPIP--------PPGLGG-----GAFGDA-RPGMPSVGNSGLPGLGLDV 769
PG+ G GPP P PPG+ G G G A +PG+P G GLPG
Sbjct: 363 PGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVP--GERGLPGA--HG 418
Query: 770 PGFGGGPNNLSGPSGFGGGPQNFG----NGPGSLGGPPGFG--SGPPGLGSAPGHLG--- 820
P GP G +G GGP G G L G PG SG PGL G +G
Sbjct: 419 PPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQG 478
Query: 821 -----------GPPAFGPGPGPGP-GP-GPIHIGGPPGFASSSGKPGP 855
GPP G PG GP GP + G PG G PGP
Sbjct: 479 LPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGP 526
Score = 53.1 bits (126), Expect = 1e-06
Identities = 55/150 (36%), Positives = 58/150 (38%), Gaps = 31/150 (20%)
Query: 724 PGNFGGSNAFGPPIPP----------PGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFG 773
PG G GPP PP PGL G PG +G +G PGL PG
Sbjct: 79 PGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGL----PGKV 134
Query: 774 GGPNNLSGPSGFGGGPQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPG-PGPG 832
G P G G G P G L GPPG PPGL PG G PG PG
Sbjct: 135 GPP----GQPGLRGEPGI--RGDQGLRGPPG----PPGL---PGPSG---ITIPGKPGAQ 178
Query: 833 PGPGPIHIGGPPGFASSSGKPGPTVIKVQN 862
PGP G PG G PG +K N
Sbjct: 179 GVPGPPGFQGEPGPQGEPGPPGDRGLKGDN 208
Score = 36.6 bits (83), Expect = 0.11
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Query: 631 PPAQGKKGLKMPV--PGNPAVPGMPNA----GLPGVGLPSAGLPGAGLPSTGLPG----- 679
P G G+ P PG P PG P A G+ G+ LP+ G+ GA L G P
Sbjct: 509 PGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGE 568
Query: 680 ---------SAITSAGLPGAGMP 693
+A+ ++ P +GMP
Sbjct: 569 LSAHATPAFTAVLTSPFPASGMP 591
Score = 35.8 bits (81), Expect = 0.19
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 186 PPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLP------PVPPVPPIPPVPSVPPMTPLP 239
P I P+ P PP + P+P LP P PP P P P PP P
Sbjct: 40 PVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGK 99
Query: 240 PMSGMPPLN--PPPVAPLPAGMNGSGAPMNLNNNLNP 274
P G P L+ P P P G P L + P
Sbjct: 100 PGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGP 136
Score = 33.9 bits (76), Expect = 0.72
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 173 STVPSTASPMNTVPPPPIPPIPAMPSLPPMPSI-----PPIPVPPPVPTLPPVPPV--PP 225
S +P P + P +P + P LP P P P P +P P + PP
Sbjct: 462 SGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPP 521
Query: 226 IPPVPSVPPMTP 237
PP P PP P
Sbjct: 522 GPPGPPGPPGAP 533
Score = 30.8 bits (68), Expect = 6.1
Identities = 32/114 (28%), Positives = 39/114 (34%), Gaps = 34/114 (29%)
Query: 186 PPPPIPPIPAMPSLPPMPSIPPIPVPP-----PVPTLPPVPP------------VPPIPP 228
P PP P P+ ++P P +P PP P P P PP P +P
Sbjct: 158 PGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPG 217
Query: 229 VPSV-----PPMTPLPPMSGMPPLNP------------PPVAPLPAGMNGSGAP 265
P PP P P G P L+ PP P P G G+ P
Sbjct: 218 APGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGP 271
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 87.4 bits (215), Expect = 6e-17
Identities = 99/253 (39%), Positives = 108/253 (42%), Gaps = 41/253 (16%)
Query: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPGAGLPSTGLPG--SAITS 684
E+ P GK G PG P +PG G PG+ P G PG G P GLPG
Sbjct: 257 ERGPEGIGKPGAA-GAPGQPGIPGTKGLPGAPGIAGPP-GPPGFGKP--GLPGLKGERGP 312
Query: 685 AGLPGAGMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPPGLGG 744
AGLPG P A GE+ G K GPP GN G G P GL G
Sbjct: 313 AGLPGG-------PGAKGEQGPAGLPG-KPGLTGPP----GNMGPQGPKGIP-GSHGLPG 359
Query: 745 --GAFGDARP-GMPSV-GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNGPGSLG 800
G G A P G P G G PG PG+ G P L GP G G P G+ PG +G
Sbjct: 360 PKGETGPAGPAGYPGAKGERGSPGSD-GKPGYPGKPG-LDGPKGNPGLPGPKGD-PG-VG 415
Query: 801 GPPGFGS--GPPGLGSAPGHLGGPPAFGPGPGPG-PGP-GPIHIGGPPGFASSS------ 850
GPPG GP G PGH G GP PG PG GPI G PGF S
Sbjct: 416 GPPGLPGPVGPAGAKGMPGHNGEA---GPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSP 472
Query: 851 GKPGPTVIKVQNM 863
G PGP I + +
Sbjct: 473 GPPGPAGIATKGL 485
Score = 84.3 bits (207), Expect = 5e-16
Identities = 90/262 (34%), Positives = 103/262 (39%), Gaps = 39/262 (14%)
Query: 630 NPPAQGKKGLKMP----VPGNPAVPGMPNAGLPGVGLP--------SAGLPGAGLPS--T 675
+P QG+ GL P G P VPG+P G PG P AGLPG P
Sbjct: 87 SPGLQGEPGLPGPPGPSAVGKPGVPGLP--GKPGERGPYGPKGDVGPAGLPGPRGPPGPP 144
Query: 676 GLPGSA-ITSAGLPGAGMPSAGIPSAG--GEEHAFLTVGSKEANNGPPFNFPGNFGGSNA 732
G+PG A I+ G PG P+ G GE+ A G + PG G
Sbjct: 145 GIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGL 204
Query: 733 FGP-----PIPPPGLGGGAFGDARPGMPSV-GNSGLPG-LGLDVPGFGGGPNNLSGPSGF 785
GP P PPG+G PG P + G+ G PG +G P GP GP G
Sbjct: 205 PGPQGPTGPSGPPGVGKRGENGV-PGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGI 263
Query: 786 G-----GGPQNFG-NGPGSLGGPPGFGS--GPPGLG--SAPGHLG--GPPAFGPGPGPGP 833
G G P G G L G PG GPPG G PG G GP GPG
Sbjct: 264 GKPGAAGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKG 323
Query: 834 GPGPIHIGGPPGFASSSGKPGP 855
GP + G PG G GP
Sbjct: 324 EQGPAGLPGKPGLTGPPGNMGP 345
Score = 84.0 bits (206), Expect = 6e-16
Identities = 84/248 (33%), Positives = 92/248 (37%), Gaps = 61/248 (24%)
Query: 644 PGNPAVPGMPNAGLPGV-GLPSAGLPGAGLPST-------GLPGSA-----------ITS 684
PG PG P G PG+ G P GLPG PS GLPG +
Sbjct: 74 PGPSGPPGKPGYGSPGLQGEP--GLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGP 131
Query: 685 AGLPGAGMPSA--GIPSAGGEEHAFLTVGSKEANNGP-----PFNFPGNFGGSNAFGPPI 737
AGLPG P GIP G ++V K GP P FPG G
Sbjct: 132 AGLPGPRGPPGPPGIPGPAG-----ISVPGKPGQQGPTGAPGPRGFPGEKGAPGV----- 181
Query: 738 PPPGLGG--GAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGNG 795
PG+ G G G PG P G GLPG GP SGP G G +N G
Sbjct: 182 --PGMNGQKGEMGYGAPGRP--GERGLPG--------PQGPTGPSGPPGVGKRGENGVPG 229
Query: 796 PGSLGGPPGFGS-----GPPGLGSAPGHLG----GPPAFGPGPGPGPGPGPIHIGGPPGF 846
+ G GF GPPG PG G G P PG PG + G PG
Sbjct: 230 QPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTKGLPGAPGI 289
Query: 847 ASSSGKPG 854
A G PG
Sbjct: 290 AGPPGPPG 297
Score = 55.1 bits (131), Expect = 3e-07
Identities = 49/125 (39%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 734 GPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGG-GPQNF 792
GPP P G G PG P G+ GL G PG G P GPS G G
Sbjct: 63 GPP-GPAGPRGHPGPSGPPGKPGYGSPGLQG----EPGLPGPP----GPSAVGKPGVPGL 113
Query: 793 GNGPGSLG--GPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFASSS 850
PG G GP G GP GL PG P PGP PGP I + G PG +
Sbjct: 114 PGKPGERGPYGPKG-DVGPAGL---PG-----PRGPPGPPGIPGPAGISVPGKPGQQGPT 164
Query: 851 GKPGP 855
G PGP
Sbjct: 165 GAPGP 169
Score = 53.5 bits (127), Expect = 9e-07
Identities = 44/119 (36%), Positives = 50/119 (42%), Gaps = 19/119 (15%)
Query: 753 GMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFGN----GPGSLGGPPGFGS- 807
G+ G G PG P GP GPSG G P +G+ G L GPPG +
Sbjct: 52 GIAVRGEQGTPG-----PPGPAGPRGHPGPSGPPGKP-GYGSPGLQGEPGLPGPPGPSAV 105
Query: 808 GPPGLGSAPGHLGGPPAFGPGPGPGPG--PGPIHIGGPPGFASSSGKPGPTVIKVQNMP 864
G PG+ PG G +GP GP PGP GPPG PGP I V P
Sbjct: 106 GKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGI------PGPAGISVPGKP 158
Score = 38.9 bits (89), Expect = 0.023
Identities = 34/103 (33%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 169 PTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTL--PPVPPVPPI 226
P + +P T P+ PP IP P P P PP P L P PP PP
Sbjct: 441 PRGAPGIPGTRGPIG---PPGIPGFPGSKGDPGSPG-PPGPAGIATKGLNGPTGPPGPPG 496
Query: 227 PPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLN 269
P S P P PP P PP A +P G +G +L+
Sbjct: 497 PRGHSGEPGLPGPP----GPPGPPGQAVMPEGFIKAGQRPSLS 535
Score = 34.7 bits (78), Expect = 0.42
Identities = 35/124 (28%), Positives = 39/124 (31%), Gaps = 26/124 (20%)
Query: 185 VPPPPIPPIPAMPSLPPMPSIP-----------------PIPVPPPVPTLPPVPPVPPIP 227
+P PP P P +P +P P P P PP P P P +P
Sbjct: 96 LPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVP 155
Query: 228 PVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGS------GAPMNLNNNLNPMFLGPLN 281
P T P G P P P GMNG GAP P GP
Sbjct: 156 GKPGQQGPTGAPGPRGFPGEKGAPGVP---GMNGQKGEMGYGAPGRPGERGLPGPQGPTG 212
Query: 282 PVNP 285
P P
Sbjct: 213 PSGP 216
Score = 30.4 bits (67), Expect = 8.0
Identities = 31/98 (31%), Positives = 34/98 (34%), Gaps = 6/98 (6%)
Query: 218 PPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGAPMNLNNNLNPMFL 277
PP P P P PS PP P G P L P P P G + G P P
Sbjct: 64 PPGPAGPRGHPGPSGPPG---KPGYGSPGLQGEPGLPGPPGPSAVGKPGVPGLPGKPGER 120
Query: 278 GPLNP---VNPIQMNSQSSVKPLPINPDDLYVSVHGMP 312
GP P V P + P P +SV G P
Sbjct: 121 GPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKP 158
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 86.7 bits (213), Expect = 9e-17
Identities = 88/226 (38%), Positives = 94/226 (41%), Gaps = 37/226 (16%)
Query: 645 GNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEE 704
G+P +PG P GLPG G PG S G PG I G PGA + S G+P GE
Sbjct: 1018 GSPGLPGPP--GLPGQR-GEEGPPGMR-GSPGPPGP-IGPPGFPGA-VGSPGLPGLQGER 1071
Query: 705 HAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPPP-----GLGGGAFGDARPGMPSVGN 759
G K GPP G G A GPP P G G A PG P G+
Sbjct: 1072 GLTGLTGDK-GEPGPP----GQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPP--GS 1124
Query: 760 SGLPGLGLDVPGFGGGPNNLSGPSGFGG--GPQNFGNGPGSLG--GPPGF-----GSGPP 810
GLPG P GP GP G G G Q F PG G GPPGF GPP
Sbjct: 1125 EGLPG-----PPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPP 1179
Query: 811 GLGSAPGHLG--GPPAFGPGPGPGPGPGPIHIGGPPGFASSSGKPG 854
G + G G GP PGP PGP I GP G GK G
Sbjct: 1180 GPQAEKGSEGIRGPSGLPGSPGP---PGPPGIQGPAGLDGLDGKDG 1222
Score = 71.6 bits (174), Expect = 3e-12
Identities = 93/274 (33%), Positives = 108/274 (39%), Gaps = 48/274 (17%)
Query: 634 QGKKGLKMP--VPGNPAVPGMPN----AGLPGV----GLPSA-GLPG-AGLPST-GLPG- 679
+G +G++ P +PG+P PG P AGL G+ G P G PG AG P G PG
Sbjct: 1185 KGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGF 1244
Query: 680 -SAITSAGLPG----AGMP----SAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGS 730
GLPG G P S G P A GE A + GPP +
Sbjct: 1245 KGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAM----GPQGRPGPPGHV------- 1293
Query: 731 NAFGPPIPP--PGLGGGAFGDARPGMPSVGNSGLPGL-GLDVPGFGGGPNNLSGPSGFGG 787
GPP PP PG G + + + G GL GL G P GP G G G
Sbjct: 1294 ---GPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAG 1350
Query: 788 -----GPQNFGNGPGSLGGPPGFGS-GPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIG 841
G Q F PG G P G G G G GGP G GP PGP
Sbjct: 1351 KEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSG-SMGPVGPPGPAGER 1409
Query: 842 GPPGFASSSGKPGPTVIKVQNMPFTVSIDEILDF 875
G PG SG PG + +M V+ DEI F
Sbjct: 1410 GHPGAPGPSGSPGLPGVP-GSMGDMVNYDEIKRF 1442
Score = 71.2 bits (173), Expect = 4e-12
Identities = 82/249 (32%), Positives = 97/249 (38%), Gaps = 60/249 (24%)
Query: 634 QGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGA-GLPSTGLPGSAITSAGLPGAGM 692
+G+KG + G P VPG+ N + L A G S G PG + S GLPG
Sbjct: 973 KGEKGDQ----GIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPG-CVGSPGLPGP-- 1025
Query: 693 PSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIP--PPGLGGGAFGDA 750
G+P GEE GPP G + GPP P PPG G
Sbjct: 1026 --PGLPGQRGEE-------------GPP-------GMRGSPGPPGPIGPPGFPGAV---G 1060
Query: 751 RPGMPSV-GNSGLPGLGLDV--PGFGGGPN--NLSGPSGFGG--GPQNFGNGPGSLG--G 801
PG+P + G GL GL D PG G P +GP G G G + + G G G
Sbjct: 1061 SPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPG 1120
Query: 802 PPGFGS--GPPGLGSAPGHLG--------------GPPAFGPGPGPGPGPGPIHIGGPPG 845
PPG GPPG G G G P F PGP PG + GPPG
Sbjct: 1121 PPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPG 1180
Query: 846 FASSSGKPG 854
+ G G
Sbjct: 1181 PQAEKGSEG 1189
Score = 70.1 bits (170), Expect = 9e-12
Identities = 83/266 (31%), Positives = 100/266 (37%), Gaps = 49/266 (18%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNA-GLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG 689
P +G+ G +P G+P + G+ G P + S + STG G G PG
Sbjct: 527 PGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDV----GSPG 582
Query: 690 AGMPS----AGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPPIPP-PGLGG 744
G+P AG+P GE+ F G + GPP G G A G P P P L
Sbjct: 583 FGLPGLPGRAGVPGLKGEKGNFGEAGPA-GSPGPPGPV-GPAGIKGAKGEPCEPCPALSN 640
Query: 745 GAFGDAR----PGMPS--VGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGGPQNFG----N 794
GD R PG PS G G PG GL G L G G G P + G
Sbjct: 641 LQDGDVRVVALPG-PSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTT 699
Query: 795 GPGSLGGPPGF--GSGPPG------------------LGSAPGHLG-----GPPAFGPGP 829
G L G PG +GP G + PG G GP G P
Sbjct: 700 GRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVG-RP 758
Query: 830 GPGPGPGPIHIGGPPGFASSSGKPGP 855
G PG + GPPG G+PGP
Sbjct: 759 GKPGQPGLPGVQGPPGLKGVQGEPGP 784
Score = 65.5 bits (158), Expect = 2e-10
Identities = 78/249 (31%), Positives = 94/249 (37%), Gaps = 44/249 (17%)
Query: 630 NPPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSAGLPGAGLPSTGLPGSAITSAGLPG 689
+P G +GL PG P +PG P GLPG G PG P S+G+PG
Sbjct: 436 DPGFVGPEGLAGE-PGPPGLPGPPGIGLPGTPGDPGGPPG--------PKGDKGSSGIPG 486
Query: 690 AGMPSA--GIPSAGGEEHAFLTVGSKEANNGPPF-NFPGNFGGSNAFGPPIP---PPGLG 743
P G P GE+ V F PG G G P+P PG+
Sbjct: 487 KEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQ 546
Query: 744 G--GAFGDARPGMPSV-------------GNSGLPGLGLDVPGFGGGPNNLSGPSGFGGG 788
G G G+ SV G+ G PG GL PG G +G G G
Sbjct: 547 GIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGL--PGLPG----RAGVPGLKGE 600
Query: 789 PQNFGN-GPGSLGGPPGFGSGPPGLGSAPGHLGGP-PAFGPGPGPGPGPGPIHIGGPPGF 846
NFG GP GPPG GP G+ A G P PA G + + PG
Sbjct: 601 KGNFGEAGPAGSPGPPG-PVGPAGIKGAKGEPCEPCPALS-----NLQDGDVRVVALPGP 654
Query: 847 ASSSGKPGP 855
+ G+PGP
Sbjct: 655 SGEKGEPGP 663
Score = 61.6 bits (148), Expect = 3e-09
Identities = 91/303 (30%), Positives = 101/303 (33%), Gaps = 87/303 (28%)
Query: 628 EKNPPAQGKKGLKMPVPGNPAVPGMPN----AGLPGVGLPS----------AGLPGAGLP 673
E P A G +G P PG+ PG P AG+ VGL AGLPG P
Sbjct: 1275 EGEPGAMGPQGRPGP-PGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGP 1333
Query: 674 S--TGLPGSAITSAGLPGAGMPSA----GIPSAGGEEHAFLTVGSK-EANNGPPFNFPGN 726
G PG T G P G P G+ A G K +A PG
Sbjct: 1334 PGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGA---AGQKGQAGEKGRAGMPGG 1390
Query: 727 FGGSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS------ 780
G S + GP + PPG G PG PS G+ GLPG VPG G N
Sbjct: 1391 PGKSGSMGP-VGPPGPAGERGHPGAPG-PS-GSPGLPG----VPGSMGDMVNYDEIKRFI 1443
Query: 781 --------------------------------GPSGFGGGPQNFGNGPGSLGGPPGFG-- 806
GP G G P G PGS G P G
Sbjct: 1444 RQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPG-APGSPGLPGQIGRE 1502
Query: 807 --SGPPGLGSAPGHLGGPPAFG------------PGPGPGPGPGPIHIGGPPGFASSSGK 852
G PG+ PG G G PGP PG G + GP G G
Sbjct: 1503 GRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGI 1562
Query: 853 PGP 855
PGP
Sbjct: 1563 PGP 1565
Score = 57.4 bits (137), Expect = 6e-08
Identities = 93/288 (32%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 620 TLEDMREIEKNPPAQGKKGLK-MPVPGNPAVPGMPNA----GLPGV-GLPSAGLPGAGLP 673
T+ DM P +G++G + + PG P PG+P GL GV G P G PG G+
Sbjct: 733 TVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEP--GPPGRGVQ 790
Query: 674 ST-GLPGSAITSAGLPGA-GMPSA-GIPSAGGEEHAFLTVGSKEANN--GPPFNFPGNFG 728
G PG+ GLPG G+P G P GE+ A + G K A GPP
Sbjct: 791 GPQGEPGAP----GLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPP-------- 838
Query: 729 GSNAFGPPIPPPGLGGGAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLSGPSGFGGG 788
G++ GPP R G G +GL G PG GP G G
Sbjct: 839 GASVSGPP-------------GRDGQQ--GQTGLRG----TPG-EKGPRGEKGEPGECSC 878
Query: 789 PQNFGNGPGSLGGPPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGPIHIGGPPGFAS 848
P G G PG G PG G PP PGP PGP PG + G PG
Sbjct: 879 PSQ---GDLIFSGMPGAPGLWMGSSWQPGPQG-PPGI-PGP-PGP-PGVPGLQGVPGNNG 931
Query: 849 SSGKPGPTVIKVQNMPFTVSIDEIL--DFFYGYQVIPGSVCLKYNEKG 894
G+PG T ++ ++P + + + D G + PG + K EKG
Sbjct: 932 LPGQPGLTA-ELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEK-GEKG 977
Score = 54.7 bits (130), Expect = 4e-07
Identities = 64/198 (32%), Positives = 75/198 (37%), Gaps = 39/198 (19%)
Query: 668 PGAGLPSTGLPGSAITSAGLPGAGMPSAGIPSAGGEEHAFLTVGSK-EANNGPPFNFPGN 726
P G GLPG PG S G A G + ++ + + GP G
Sbjct: 335 PKGGKGERGLPGP-------PG----SKGEKGARGNDCVRISPDAPLQCAEGPK----GE 379
Query: 727 FGGSNAFGPPIPPPGLGG-GAFGDARPGMPSVGNSGLPGLGLDVPGFGGGPNNLS--GPS 783
G S A GP P G G G+ G G G+PG PG G P + GP
Sbjct: 380 KGESGALGPSGLPGSTGEKGQKGEKGDG----GIKGVPGK----PGRDGRPGEICVIGPK 431
Query: 784 GFGG-----GPQNFGNGPGSLGGPPGFGSGPPGLG--SAPGHLGGPPAFGPGPGPGPGPG 836
G G GP+ P GPPG GPPG+G PG GGPP G PG
Sbjct: 432 GQKGDPGFVGPEGLAGEP----GPPGL-PGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPG 486
Query: 837 PIHIGGPPGFASSSGKPG 854
GG PG G+ G
Sbjct: 487 KEGPGGKPGKPGVKGEKG 504
Score = 53.5 bits (127), Expect = 9e-07
Identities = 89/292 (30%), Positives = 103/292 (35%), Gaps = 77/292 (26%)
Query: 631 PPAQGKKGLKMPVPGNPAVPGMPNAGLPGVGLPSA--GLPGAGLPSTGLPGSAITSAGLP 688
P ++G+KG + GN V P+A L P G GA PS GLPGS G
Sbjct: 348 PGSKGEKGAR----GNDCVRISPDAPLQCAEGPKGEKGESGALGPS-GLPGST-GEKGQK 401
Query: 689 GA-------GMPSAGIPSAGGEEHAFLTVGSKEANNGPPFNFPGNFGGSNAFGPP-IP-P 739
G G+P G P G +G K P F P G GPP +P P
Sbjct: 402 GEKGDGGIKGVP--GKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEP--GPPGLPGP 457
Query: 740 PGLG-GGAFGDARPGMP-----SVGNSGLPGLGLDVPGFGGGPNNLSGPSG--------F 785
PG+G G GD PG P G+SG+PG + PG G + G G
Sbjct: 458 PGIGLPGTPGD--PGGPPGPKGDKGSSGIPGK--EGPGGKPGKPGVKGEKGDPCEVCPTL 513
Query: 786 GGGPQNFGNGPGSLG-----GPPGFGSGPPGLGSAPGHLGGP------------------ 822
G QNF PG G G P G PG+ G G P
Sbjct: 514 PEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTG 573
Query: 823 -------PAFG----PGPGPGPG----PGPIHIGGPPGFASSSGKPGPTVIK 859
P FG PG PG G GP G G GP IK
Sbjct: 574 ASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIK 625
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 84.7 bits (208), Expect = 4e-16
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 181 PMNTVPP-PPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLP 239
PM VPP PP+ P+P P + P+P PP+ PP P + VPP PP+ P+P PPM PLP
Sbjct: 299 PMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPLP 358
Query: 240 PMSGMPPLNP-PPVAPLP 256
P M PL P PP+APLP
Sbjct: 359 PGPPMAPLPPGPPMAPLP 376
Score = 84.3 bits (207), Expect = 5e-16
Identities = 45/93 (48%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 169 PTFSSTVPSTASP-MNTVPP-PPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPI 226
P S P P M VPP PP+ P+P P + P+P+ PP+ PP P + VPP PP+
Sbjct: 277 PPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPM 336
Query: 227 PPVPSVPPMTPLPPMSGMPPLNP-PPVAPLPAG 258
VP PPM PLPP M PL P PP+APLP G
Sbjct: 337 ARVPPGPPMAPLPPGPPMAPLPPGPPMAPLPPG 369
Score = 82.0 bits (201), Expect = 2e-15
Identities = 62/188 (32%), Positives = 85/188 (45%), Gaps = 40/188 (21%)
Query: 163 GASFGSPTFSST-----VPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPI----PVP-- 211
GA + +P VP P +P PP+PP P M +PP P I P+ PVP
Sbjct: 221 GAYYAAPALDPALCVHLVPQLPRPP-VLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPG 279
Query: 212 ---------------PPVPTLPPVPPVPPIPPVPSVPPMTPL---PPMSGMPPLNP---- 249
PP P + PVPP PP+ PVP+ PPM P+ PPM+ +PP P
Sbjct: 280 SRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARV 339
Query: 250 ---PPVAPLPAGMNGSGAPMNLNNNLNPMFLG-PLNPVNPIQMNSQSSVKPLPINPDDLY 305
PP+APLP G AP+ + P+ G P+ P+ P + + P+ I +
Sbjct: 340 PPGPPMAPLPPG--PPMAPLPPGPPMAPLPPGPPMAPLPPRSHVPHTGLAPVHITWAPVI 397
Query: 306 VSVHGMPF 313
S + PF
Sbjct: 398 NSYYACPF 405
Score = 80.9 bits (198), Expect = 5e-15
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
Query: 151 STASVGTAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPV 210
+TA+ A P + G +++ A ++ VP P PP+ +P +PP P + P+P
Sbjct: 205 NTATADLAHP-LDMFLGGAYYAAPALDPALCVHLVPQLPRPPVLPVPPMPPRPPMVPMPP 263
Query: 211 PPPVPTLPPVPPVP------PIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAG 258
PP+ +PP+ PVP P+PP P + P+ P PPM+ +PP PP+AP+P G
Sbjct: 264 RPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPW--PPMAPVPTG 315
>gi|74099697 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 82.4 bits (202), Expect = 2e-15
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFK--KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V ++GLP+ V+ FF K+ I Y G+ +GE FVE +E + K
Sbjct: 10 GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+++V K ++D + K S D +G V
Sbjct: 70 ALKKDRETMGHRYVEVF----KSNSVEMDWVLKHTGPNSPDTAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF +K +++QF G+ + N + + VD G+ G+A VQF +++ A K+ + H+
Sbjct: 115 -LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R + + ++R +PP +K + M PG PG
Sbjct: 174 ERIGHRYIEIFKSSRAEVR-THYDPP---RKLMAMQRPGPYDRPG 214
Score = 82.0 bits (201), Expect = 2e-15
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
V V G+P+S ++V FF ++ + + GR +G V+ S ++ ALK
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 362 RNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
++R M RYVEV S + E WV ++ GP+ P T
Sbjct: 73 KDRETMGHRYVEVFKSNSVEMDWVL--------KHTGPNS-----PDTA----------- 108
Query: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 479
GF V L+GLPF + ++ FF L+IV + + + G++TGE FV+F
Sbjct: 109 -------NDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFA 160
Query: 480 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 519
++ + AL +HK+ +G+R+I++ ++ + D RK
Sbjct: 161 SQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK 200
Score = 57.8 bits (138), Expect = 5e-08
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP+ A + +FF L+ + ++I GP+G+ TGE VEF D AA+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ K M +R++++
Sbjct: 346 AKDKANMQHRYVEL 359
Score = 47.8 bits (112), Expect = 5e-05
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF S +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEI 183
Score = 47.4 bits (111), Expect = 6e-05
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQD 355
P +D +V + G+PF + ++ FF GL + + + L D GR+ G V+F S +
Sbjct: 105 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 356 TFEALKRNRMLMIQRYVEV 374
+ALK+++ + RY+E+
Sbjct: 165 AEKALKKHKERIGHRYIEI 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + +D A+ +++
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 350
Query: 366 LMIQRYVEV 374
M RYVE+
Sbjct: 351 NMQHRYVEL 359
Score = 45.1 bits (105), Expect = 3e-04
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 848 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKGMPTGEAMVAFE 905
S+ G+ G V+KV+ +P++ S DE++ FF ++ G+ ++ Y +G P+GEA V E
Sbjct: 4 STEGREG-FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62
Query: 906 SRDEATAAV 914
S +E A+
Sbjct: 63 SEEEVKLAL 71
Score = 42.7 bits (99), Expect = 0.002
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G V G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRR 88
I + + SS+ E++ + R+
Sbjct: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRK 200
Score = 37.0 bits (84), Expect = 0.086
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 598
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F +DA
Sbjct: 290 CVHMRGLPYRATENDIYNFFS--PLNPMRVHIEIGPDGRVTGEADVEFATHEDA 341
Score = 36.6 bits (83), Expect = 0.11
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++++GLP ++ FFS I +G G+ + G GEAF+ ++E+ +L +
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEM 79
+ T+ V + S+ EM
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEM 93
Score = 35.4 bits (80), Expect = 0.25
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT EDA
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSS 75
M + ++ V L L+S
Sbjct: 345 MAKDKANMQHRYVELFLNS 363
>gi|9624998 heterogeneous nuclear ribonucleoprotein H2 [Homo
sapiens]
Length = 449
Score = 82.4 bits (202), Expect = 2e-15
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFK--KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKA 486
GF V ++GLP+ V+ FF K+ I Y G+ +GE FVE +E + K
Sbjct: 10 GFVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKL 69
Query: 487 ALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRKRLQNFSYDQREMILNPEGDVNSAKVCA 546
AL + ++ MG+R+++V K ++D + K S D +G V
Sbjct: 70 ALKKDRETMGHRYVEVF----KSNSVEMDWVLKHTGPNSPDTAN-----DGFVR------ 114
Query: 547 HITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHR 606
+ +PF +K +++QF G+ + N + + VD G+ G+A VQF +++ A K+ + H+
Sbjct: 115 -LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHK 173
Query: 607 KKLNGREAFVHVVTLEDMREIEKNPPAQGKKGLKMPVPGNPAVPG 651
+++ R + + ++R +PP +K + M PG PG
Sbjct: 174 ERIGHRYIEIFKSSRAEVR-THYDPP---RKLMAMQRPGPYDRPG 214
Score = 82.0 bits (201), Expect = 2e-15
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVD----AVHLLKDHVGRNNGNGLVKFLSPQDTFEALK 361
V V G+P+S ++V FF ++ + + GR +G V+ S ++ ALK
Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72
Query: 362 RNRMLMIQRYVEV--SPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPRSKSPSGQKR 419
++R M RYVEV S + E WV ++ GP+ P T
Sbjct: 73 KDRETMGHRYVEVFKSNSVEMDWVL--------KHTGPNS-----PDTA----------- 108
Query: 420 SRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR 479
GF V L+GLPF + ++ FF L+IV + + + G++TGE FV+F
Sbjct: 109 -------NDGF-VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFA 160
Query: 480 NEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 519
++ + AL +HK+ +G+R+I++ ++ + D RK
Sbjct: 161 SQEIAEKALKKHKERIGHRYIEIFKSSRAEVRTHYDPPRK 200
Score = 57.8 bits (138), Expect = 5e-08
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 429 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 488
G CV+++GLP+ A + +FF L+ + ++I GP+G+ TGE VEF D AA+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPLNPMR--VHIEIGPDGRVTGEADVEFATHEDAVAAM 345
Query: 489 CRHKQYMGNRFIQV 502
+ K M +R++++
Sbjct: 346 AKDKANMQHRYVEL 359
Score = 47.8 bits (112), Expect = 5e-05
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 858 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 917
++++ +PF S +EI+ FF G +++P + L + +G TGEA V F S++ A A+
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 918 NDRPIGSRKVKL 929
+R IG R +++
Sbjct: 173 KER-IGHRYIEI 183
Score = 47.4 bits (111), Expect = 6e-05
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 298 PINPDDLYVSVHGMPFSAMENDVRDFFHGLRV--DAVHLLKDHVGRNNGNGLVKFLSPQD 355
P +D +V + G+PF + ++ FF GL + + + L D GR+ G V+F S +
Sbjct: 105 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 164
Query: 356 TFEALKRNRMLMIQRYVEV 374
+ALK+++ + RY+E+
Sbjct: 165 AEKALKKHKERIGHRYIEI 183
Score = 45.8 bits (107), Expect = 2e-04
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRM 365
V + G+P+ A END+ +FF L VH+ GR G V+F + +D A+ +++
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKA 350
Query: 366 LMIQRYVEV 374
M RYVE+
Sbjct: 351 NMQHRYVEL 359
Score = 45.1 bits (105), Expect = 3e-04
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 848 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK--YNEKGMPTGEAMVAFE 905
S+ G+ G V+KV+ +P++ S DE++ FF ++ G+ ++ Y +G P+GEA V E
Sbjct: 4 STEGREG-FVVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELE 62
Query: 906 SRDEATAAV 914
S +E A+
Sbjct: 63 SEEEVKLAL 71
Score = 42.7 bits (99), Expect = 0.002
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTIPDGG----VHIVGGELGEAFIVFATDEDARLGMMRT 60
+RL+GLP +I FFSGL I G V G GEAF+ FA+ E A + +
Sbjct: 113 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172
Query: 61 GGTIKGSKVTLLLSSKTEMQNMIELSRR 88
I + + SS+ E++ + R+
Sbjct: 173 KERIGHRYIEIFKSSRAEVRTHYDPPRK 200
Score = 37.0 bits (84), Expect = 0.086
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 545 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 598
C H+ +P+ T+ D+ F P++ VH+ + +G+ G+A V+F +DA
Sbjct: 290 CVHMRGLPYRATENDIYNFFS--PLNPMRVHIEIGPDGRVTGEADVEFATHEDA 341
Score = 36.6 bits (83), Expect = 0.11
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 4 VIRLQGLPIVAGTMDIRHFFSGLTIPDG--GVHIV----GGELGEAFIVFATDEDARLGM 57
V++++GLP ++ FFS I +G G+ + G GEAF+ ++E+ +L +
Sbjct: 12 VVKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLAL 71
Query: 58 MRTGGTIKGSKVTLLLSSKTEM 79
+ T+ V + S+ EM
Sbjct: 72 KKDRETMGHRYVEVFKSNSVEM 93
Score = 35.4 bits (80), Expect = 0.25
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 5 IRLQGLPIVAGTMDIRHFFSGLTI--------PDGGVHIVGGELGEAFIVFATDEDARLG 56
+ ++GLP A DI +FFS L PDG V GEA + FAT EDA
Sbjct: 291 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRV------TGEADVEFATHEDAVAA 344
Query: 57 MMRTGGTIKGSKVTLLLSS 75
M + ++ V L L+S
Sbjct: 345 MAKDKANMQHRYVELFLNS 363
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,452,517
Number of Sequences: 37866
Number of extensions: 4087458
Number of successful extensions: 89717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 1556
Number of HSP's that attempted gapping in prelim test: 21991
Number of HSP's gapped (non-prelim): 25531
length of query: 932
length of database: 18,247,518
effective HSP length: 112
effective length of query: 820
effective length of database: 14,006,526
effective search space: 11485351320
effective search space used: 11485351320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.