Guide to the Human Genome
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Name: SALL1 Sequence: fasta or formatted (1324aa) NCBI GI: 118442837
Description:

sal-like 1 isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [1227aa] sal-like 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         98           4
 C cysteine            2.1         28           2
 D aspartate           3.8         50           2
 E glutamate           5.2         69           2
 F phenylalanine       3.5         47           2
 G glycine             6.8         90           4
 H histidine           2.9         38           1
 I isoleucine          4.1         54           2
 K lysine              5.1         68           2
 L leucine             8.3        110           3
 M methionine          2.1         28           1
 N asparagine          5.3         70           1
 P proline             8.6        114           3
 Q glutamine           5.0         66           4
 R arginine            3.2         43           2
 S serine             14.9        197          10
 T threonine           6.5         86           2
 V valine              4.2         56           2
 W tryptophan          0.2          3           1
 Y tyrosine            0.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sal-like 1 isoform a 
SALL1                 0.922   sal-like 1 isoform b 
SALL3                 0.458   sal-like 3 
SALL4                 0.210   sal-like 4 
SALL2                 0.165   sal-like 2 
ZNF236                0.046   zinc finger protein 236 
ZNF433                0.038   zinc finger protein 433 
ZNF182                0.035   zinc finger protein 21 isoform 2 
ZNF182                0.035   zinc finger protein 21 isoform 1 
LOC100287515          0.034   PREDICTED: hypothetical protein XP_002343928 
ZNF26                 0.034   zinc finger protein 26 
ZNF775                0.031   zinc finger protein 775 
ZNF709                0.029   zinc finger protein 709 isoform b 
ZNF709                0.029   zinc finger protein 709 isoform a 
ZSCAN20               0.029   zinc finger protein 31 
ZNF177                0.029   zinc finger protein 177 
ZNF16                 0.029   zinc finger protein 16 
ZNF16                 0.029   zinc finger protein 16 
ZFP112                0.028   zinc finger protein 228 isoform 1 
ZFP112                0.028   zinc finger protein 228 isoform 2 
ZNF559                0.028   zinc finger protein 559 
ZFP90                 0.028   zinc finger protein 90 
ZNF674                0.028   zinc finger family member 674 isoform 2 
ZNF674                0.028   zinc finger family member 674 isoform 1 
ZNF583                0.028   zinc finger protein 583 
ZNF583                0.028   zinc finger protein 583 
ZNF583                0.028   zinc finger protein 583 
ZNF226                0.028   zinc finger protein 226 isoform a 
ZNF226                0.028   zinc finger protein 226 isoform a 
ZNF135                0.028   zinc finger protein 135 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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