Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 19913373
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens]
(237 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens] 499 e-142
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens] 446 e-126
gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens] 386 e-108
gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens] 379 e-105
gi|19913377 G6B protein isoform G6b-C precursor [Homo sapiens] 288 2e-78
gi|19913381 G6B protein isoform G6b-E precursor [Homo sapiens] 286 1e-77
gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo sapi... 35 0.057
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 35 0.074
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 35 0.074
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 35 0.074
gi|56711322 ring finger protein 43 [Homo sapiens] 35 0.074
gi|169209171 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|239753856 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|239748415 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo ... 33 0.16
gi|55750053 atrophin-1 [Homo sapiens] 33 0.16
gi|55750041 atrophin-1 [Homo sapiens] 33 0.16
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 33 0.16
gi|239755924 PREDICTED: hypothetical protein [Homo sapiens] 33 0.22
gi|239750442 PREDICTED: hypothetical protein XP_002347364 [Homo ... 33 0.22
gi|239744744 PREDICTED: hypothetical protein XP_002343250 [Homo ... 33 0.22
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 33 0.22
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 33 0.28
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 33 0.28
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 33 0.28
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 33 0.28
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 33 0.28
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 33 0.28
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 33 0.28
>gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens]
Length = 237
Score = 499 bits (1285), Expect = e-142
Identities = 237/237 (100%), Positives = 237/237 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 181 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC 237
ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC
Sbjct: 181 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC 237
>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
Length = 222
Score = 446 bits (1148), Expect = e-126
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 181 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGT 213
ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGT
Sbjct: 181 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGT 213
>gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens]
Length = 193
Score = 386 bits (992), Expect = e-108
Identities = 193/237 (81%), Positives = 193/237 (81%), Gaps = 44/237 (18%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTH
Sbjct: 121 HVLGDRTYCKAPGPTH-------------------------------------------- 136
Query: 181 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC 237
ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC
Sbjct: 137 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGPC 193
>gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens]
Length = 241
Score = 379 bits (973), Expect = e-105
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
Sbjct: 121 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF 180
Query: 181 A 181
A
Sbjct: 181 A 181
>gi|19913377 G6B protein isoform G6b-C precursor [Homo sapiens]
Length = 217
Score = 288 bits (738), Expect = 2e-78
Identities = 137/138 (99%), Positives = 138/138 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTHGS 138
HVLGDRTYCKAPGPTHG+
Sbjct: 121 HVLGDRTYCKAPGPTHGA 138
>gi|19913381 G6B protein isoform G6b-E precursor [Homo sapiens]
Length = 197
Score = 286 bits (731), Expect = 1e-77
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
Sbjct: 1 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR 60
Query: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
Sbjct: 61 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL 120
Query: 121 HVLGDRTYCKAPGPTH 136
HVLGDRTYCKAPGPTH
Sbjct: 121 HVLGDRTYCKAPGPTH 136
>gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo
sapiens]
Length = 289
Score = 35.0 bits (79), Expect = 0.057
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 170 PPQPIRPLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAP 229
PPQ P P + L P + + P S GRA+ SRGP G G SP++ P
Sbjct: 80 PPQDTSPGPIYFLDPKVTRFGRSCTPAYSMQGRAK-SRGP-----EVTPGPGAYSPEKVP 133
Query: 230 PAVHSGP 236
P H P
Sbjct: 134 PVRHRTP 140
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 34.7 bits (78), Expect = 0.074
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 185 PHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSGP 236
P S + AP A+ G A+ S GP PG E GP P + P SGP
Sbjct: 50 PQSPGLDEPAPGAAADGGARWSAGPAPGLE-----GGPRDPGPSAPPPRSGP 96
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 34.7 bits (78), Expect = 0.074
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 169 LPPQPIRPLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQA 228
LP + LP PP S R A +GG A P P T G GPSSP A
Sbjct: 166 LPLMLMLMLPTLQPLPPPGSARRPRRGRAGRGGAA-----PAPPTGSMRAGPGPSSPSAA 220
Query: 229 P 229
P
Sbjct: 221 P 221
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 34.7 bits (78), Expect = 0.074
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 169 LPPQPIRPLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQA 228
LP + LP PP S R A +GG A P P T G GPSSP A
Sbjct: 166 LPLMLMLMLPTLQPLPPPGSARRPRRGRAGRGGAA-----PAPPTGSMRAGPGPSSPSAA 220
Query: 229 P 229
P
Sbjct: 221 P 221
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 34.7 bits (78), Expect = 0.074
Identities = 51/200 (25%), Positives = 76/200 (38%), Gaps = 35/200 (17%)
Query: 25 GRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGRRPILWASSSGTPTVPPLQPFV-GR 83
G D V ++C +S ++ V S C LS P+++ S G P +QP V R
Sbjct: 473 GSSSDSV-VNCTDIS--LQGVHGSSSTFCSSLSSDFDPLVYCSPKGDPQRVDMQPSVTSR 529
Query: 84 LRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQL 143
RSLDS + E +S S + + RH + + + + PGP G PQ
Sbjct: 530 PRSLDSVVPTGETQVS---SHVHYHRHRHHHYKKRF------QWHGRKPGPETG--VPQS 578
Query: 144 LIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRFALSPPHSSTCENRAPEASKGGRA 203
P+ R PQP P P ++ +S+ R + RA
Sbjct: 579 RPPI-------------------PRTQPQPEPPSPDQQVTRSNSAAPSGRLSN-PQCPRA 618
Query: 204 QDSRGPGPGTEPALCGSGPS 223
PGP ++C S S
Sbjct: 619 LPEPAPGPVDASSICPSTSS 638
>gi|169209171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 33.5 bits (75), Expect = 0.16
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 144 LIPLLGAGLVLGLGALGLVWW------LHRRLPPQPIRPL--PRFALSP---PHSS--TC 190
L+P+ G G +VW L+ RLPP P+ PL P A +P PHS+
Sbjct: 49 LLPVPGRRRCARAGLWKIVWVNSQASRLNARLPPPPLHPLLPPPLAFNPTRHPHSAPQPG 108
Query: 191 ENRAPEA-SKGGRAQDSRGPGP-GTEPALCGSG 221
RAP ++ + S+G P GT LC G
Sbjct: 109 PERAPRVLARAEGSPGSKGRSPEGTPSLLCPGG 141
>gi|239753856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.16
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 191 ENRAPEASKGGRAQDSRGPGPGTEPA-LCGSGPSSPQQA 228
E AP A+ G A SRG GPGT P CG GP +P ++
Sbjct: 3 ELEAPTATARGTAS-SRGCGPGTAPPPSCGRGPETPSRS 40
>gi|239748415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.16
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 191 ENRAPEASKGGRAQDSRGPGPGTEPA-LCGSGPSSPQQA 228
E AP A+ G A SRG GPGT P CG GP +P ++
Sbjct: 3 ELEAPTATARGTAS-SRGCGPGTAPPPSCGRGPETPSRS 40
>gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo
sapiens]
Length = 208
Score = 33.5 bits (75), Expect = 0.16
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 191 ENRAPEASKGGRAQDSRGPGPGTEPA-LCGSGPSSPQQA 228
E AP A+ G A SRG GPGT P CG GP +P ++
Sbjct: 3 ELEAPTATARGTAS-SRGCGPGTAPPPSCGRGPETPSRS 40
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 170 PPQPIRPLPRFALSPP--HSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQ 227
PP +RPL + SPP + P G+ PGP P L SP
Sbjct: 303 PPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLA----PSPHS 358
Query: 228 APPAVHSGP 236
PPA S P
Sbjct: 359 LPPASSSAP 367
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 170 PPQPIRPLPRFALSPP--HSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQ 227
PP +RPL + SPP + P G+ PGP P L SP
Sbjct: 303 PPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLA----PSPHS 358
Query: 228 APPAVHSGP 236
PPA S P
Sbjct: 359 LPPASSSAP 367
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.5 bits (75), Expect = 0.16
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 176 PLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPA 231
P P +PP SS+ P S G GP P PA+ + P +P PP+
Sbjct: 117 PAPGVGSAPPASSSAPPATPPTS-GAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPS 171
Score = 31.6 bits (70), Expect = 0.63
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 171 PQPIRPLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPP 230
P P +P P PPH + + P ++ GPG P + GS P + APP
Sbjct: 77 PPPQQPPPH--QPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGV-GSAPPASSSAPP 133
Query: 231 A 231
A
Sbjct: 134 A 134
Score = 28.9 bits (63), Expect = 4.1
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 171 PQPIR----PLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPG-PGTEPALCGSGPSSP 225
PQP + P P S P + AP A S P P T A GSGP
Sbjct: 91 PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPT 150
Query: 226 QQAPPAVHSGP 236
PPAV S P
Sbjct: 151 PTPPPAVTSAP 161
>gi|239755924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 102
Score = 33.1 bits (74), Expect = 0.22
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 172 QPIRPLPRFALSPPHSSTCEN--RAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAP 229
QP RPLPR +PP + N AP A+ G RA R + A+ G G P AP
Sbjct: 38 QPRRPLPRLRRAPPPAPALGNGGLAPRATSGSRAARQR-----PDSAILG-GVEMPLDAP 91
Query: 230 PAVHS 234
A S
Sbjct: 92 VATTS 96
>gi|239750442 PREDICTED: hypothetical protein XP_002347364 [Homo
sapiens]
Length = 102
Score = 33.1 bits (74), Expect = 0.22
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 172 QPIRPLPRFALSPPHSSTCEN--RAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAP 229
QP RPLPR +PP + N AP A+ G RA R + A+ G G P AP
Sbjct: 38 QPRRPLPRLRRAPPPAPALGNGGLAPRATSGSRAARQR-----PDSAILG-GVEMPLDAP 91
Query: 230 PAVHS 234
A S
Sbjct: 92 VATTS 96
>gi|239744744 PREDICTED: hypothetical protein XP_002343250 [Homo
sapiens]
Length = 102
Score = 33.1 bits (74), Expect = 0.22
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 172 QPIRPLPRFALSPPHSSTCEN--RAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAP 229
QP RPLPR +PP + N AP A+ G RA R + A+ G G P AP
Sbjct: 38 QPRRPLPRLRRAPPPAPALGNGGLAPRATSGSRAARQR-----PDSAILG-GVEMPLDAP 91
Query: 230 PAVHS 234
A S
Sbjct: 92 VATTS 96
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 33.1 bits (74), Expect = 0.22
Identities = 33/107 (30%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 132 PGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRFALSPPHSSTCE 191
P + S Y L P A + GA G W R +PP+P P S P
Sbjct: 229 PVVSQPSFYSGPLGPTYPAAQLGPRGAAGYSWSPQRSMPPRPGYPGTPMGASGPGYPLRG 288
Query: 192 NRAPEASKGGRAQDSRGPGPGTEP--ALCGSGPSSPQQAPPAVHSGP 236
RAP G Q S P G +P + PS P Q P+V P
Sbjct: 289 GRAPSP---GYPQQSPYPATGGKPPYPIQPQLPSFPGQPQPSVPLQP 332
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 170 PPQPIRPLPRFALSP-----PHSSTCENRAPEASKGGRAQDSRGPGPGT--EPALCGSGP 222
P P +P P+ L+P P S+TC+ AP KG + P P T EPA P
Sbjct: 588 PTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPA-----P 641
Query: 223 SSPQQAPPAVHSGP 236
++P+ P P
Sbjct: 642 TTPKGTAPTTLKEP 655
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 170 PPQPIRPLPRFALSP-----PHSSTCENRAPEASKGGRAQDSRGPGPGT--EPALCGSGP 222
P P +P P+ L+P P S+TC+ AP KG + P P T EPA P
Sbjct: 629 PTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPA-----P 682
Query: 223 SSPQQAPPAVHSGP 236
++P+ P P
Sbjct: 683 TTPKGTAPTTLKEP 696
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 170 PPQPIRPLPRFALSP-----PHSSTCENRAPEASKGGRAQDSRGPGPGT--EPALCGSGP 222
P P +P P+ L+P P S+TC+ AP KG + P P T EPA P
Sbjct: 681 PTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPA-----P 734
Query: 223 SSPQQAPPAVHSGP 236
++P+ P P
Sbjct: 735 TTPKGTAPTTLKEP 748
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 170 PPQPIRPLPRFALSP-----PHSSTCENRAPEASKGGRAQDSRGPGPGT--EPALCGSGP 222
P P +P P+ L+P P S+TC+ AP KG + P P T EPA P
Sbjct: 722 PTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPA-----P 775
Query: 223 SSPQQAPPAVHSGP 236
++P+ P P
Sbjct: 776 TTPKGTAPTTLKEP 789
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.7 bits (73), Expect = 0.28
Identities = 42/171 (24%), Positives = 56/171 (32%), Gaps = 19/171 (11%)
Query: 69 SGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVLHVL---GD 125
S TP PP + RRL+ L+ C+ + S V H+L G+
Sbjct: 191 SQTPPGPPAAAACDPTKDDKGYFRRLKYLMERRFP-CGVCQKSFKQSSHLVQHMLVHSGE 249
Query: 126 RTY-CKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRFALSP 184
R Y C G T+ V + + G PPQP LP L
Sbjct: 250 RPYECGVCGRTYNHVSSLIRHRRCHKDVPPAAGG-----------PPQPGPHLPPLGLPA 298
Query: 185 PHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSG 235
P +S AP G P P + + +G P PPA G
Sbjct: 299 PAASAATAAAPSTVSSGPPATPVAPAPSADGSAAPAGVGVP---PPATGGG 346
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 32.7 bits (73), Expect = 0.28
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 170 PPQPIRPLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGP---GTEPAL---CGSGPS 223
PP P RP P + SP ++ P + SR P P TEPA+ CGSGP
Sbjct: 35 PPSPARPAPSASPSPSRAA-----GPFLPPSHASTSSRSPPPRARRTEPAVPPSCGSGPG 89
Query: 224 S 224
+
Sbjct: 90 A 90
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 32.7 bits (73), Expect = 0.28
Identities = 42/171 (24%), Positives = 56/171 (32%), Gaps = 19/171 (11%)
Query: 69 SGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVLHVL---GD 125
S TP PP + RRL+ L+ C+ + S V H+L G+
Sbjct: 191 SQTPPGPPAAAACDPTKDDKGYFRRLKYLMERRFP-CGVCQKSFKQSSHLVQHMLVHSGE 249
Query: 126 RTY-CKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRFALSP 184
R Y C G T+ V + + G PPQP LP L
Sbjct: 250 RPYECGVCGRTYNHVSSLIRHRRCHKDVPPAAGG-----------PPQPGPHLPPLGLPA 298
Query: 185 PHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSSPQQAPPAVHSG 235
P +S AP G P P + + +G P PPA G
Sbjct: 299 PAASAATAAAPSTVSSGPPATPVAPAPSADGSAAPAGVGVP---PPATGGG 346
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 32.7 bits (73), Expect = 0.28
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 170 PPQPIRPLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGP---GTEPAL---CGSGPS 223
PP P RP P + SP ++ P + SR P P TEPA+ CGSGP
Sbjct: 35 PPSPARPAPSASPSPSRAA-----GPFLPPSHASTSSRSPPPRARRTEPAVPPSCGSGPG 89
Query: 224 S 224
+
Sbjct: 90 A 90
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,130,774
Number of Sequences: 37866
Number of extensions: 787911
Number of successful extensions: 4490
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 4216
Number of HSP's gapped (non-prelim): 497
length of query: 237
length of database: 18,247,518
effective HSP length: 99
effective length of query: 138
effective length of database: 14,498,784
effective search space: 2000832192
effective search space used: 2000832192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.