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Search of human proteins with 19913356
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein
isoform 3 [Homo sapiens]
(647 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 1285 0.0
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 1243 0.0
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 1243 0.0
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 1243 0.0
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 1243 0.0
gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform ... 1242 0.0
gi|13699811 WHSC1L1 protein isoform long [Homo sapiens] 222 7e-58
gi|13699813 WHSC1L1 protein isoform short [Homo sapiens] 202 8e-52
gi|27477095 nuclear receptor binding SET domain protein 1 isofor... 99 2e-20
gi|19923586 nuclear receptor binding SET domain protein 1 isofor... 99 2e-20
gi|4504191 mutS homolog 6 [Homo sapiens] 72 2e-12
gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens] 65 1e-10
gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens] 51 4e-06
gi|194688135 high-mobility group box 2 [Homo sapiens] 44 4e-04
gi|194688133 high-mobility group box 2 [Homo sapiens] 44 4e-04
gi|11321591 high-mobility group box 2 [Homo sapiens] 44 4e-04
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 44 5e-04
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H... 42 0.001
gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [H... 42 0.001
gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [H... 42 0.001
gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Ho... 42 0.001
gi|115529449 upstream binding transcription factor, RNA polymera... 42 0.001
gi|115529451 upstream binding transcription factor, RNA polymera... 42 0.001
gi|7657671 upstream binding transcription factor, RNA polymerase... 42 0.001
gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens] 42 0.001
gi|83715964 high-mobility group 20B [Homo sapiens] 42 0.002
gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens] 42 0.002
gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] 41 0.003
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 41 0.003
gi|217035121 HMG-BOX transcription factor BBX isoform 1 [Homo sa... 41 0.004
>gi|19913356 Wolf-Hirschhorn syndrome candidate 1 protein isoform 3
[Homo sapiens]
Length = 647
Score = 1285 bits (3325), Expect = 0.0
Identities = 647/647 (100%), Positives = 647/647 (100%)
Query: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG
Sbjct: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
Query: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG
Sbjct: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
Query: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE
Sbjct: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
Query: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV
Sbjct: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
Query: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ
Sbjct: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
Query: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA
Sbjct: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
Query: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK
Sbjct: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
Query: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG
Sbjct: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
Query: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE
Sbjct: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
Query: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR
Sbjct: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
Query: 601 NRASTAASSALGFSKSSSPSASLTENELLWEPTPVKLDLNPAALYCT 647
NRASTAASSALGFSKSSSPSASLTENELLWEPTPVKLDLNPAALYCT
Sbjct: 601 NRASTAASSALGFSKSSSPSASLTENELLWEPTPVKLDLNPAALYCT 647
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 1243 bits (3215), Expect = 0.0
Identities = 628/632 (99%), Positives = 629/632 (99%)
Query: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG
Sbjct: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
Query: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG
Sbjct: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
Query: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE
Sbjct: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
Query: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV
Sbjct: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
Query: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ
Sbjct: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
Query: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA
Sbjct: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
Query: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK
Sbjct: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
Query: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG
Sbjct: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
Query: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE
Sbjct: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
Query: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR
Sbjct: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
Query: 601 NRASTAASSALGFSKSSSPSASLTENELLWEP 632
NRASTAASSALGFSKSSSPSASLTENE+ P
Sbjct: 601 NRASTAASSALGFSKSSSPSASLTENEVSDSP 632
Score = 29.6 bits (65), Expect = 9.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFG 268
K + D++W K+ Y WWP V + ++ K ++ V FFG
Sbjct: 877 KLHFQDIIWVKLGNYRWWPAEVCHPK--NVPPNIQKMKHEIGEFPVFFFG 924
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 1243 bits (3215), Expect = 0.0
Identities = 628/632 (99%), Positives = 629/632 (99%)
Query: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG
Sbjct: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
Query: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG
Sbjct: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
Query: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE
Sbjct: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
Query: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV
Sbjct: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
Query: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ
Sbjct: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
Query: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA
Sbjct: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
Query: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK
Sbjct: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
Query: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG
Sbjct: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
Query: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE
Sbjct: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
Query: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR
Sbjct: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
Query: 601 NRASTAASSALGFSKSSSPSASLTENELLWEP 632
NRASTAASSALGFSKSSSPSASLTENE+ P
Sbjct: 601 NRASTAASSALGFSKSSSPSASLTENEVSDSP 632
Score = 29.6 bits (65), Expect = 9.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFG 268
K + D++W K+ Y WWP V + ++ K ++ V FFG
Sbjct: 877 KLHFQDIIWVKLGNYRWWPAEVCHPK--NVPPNIQKMKHEIGEFPVFFFG 924
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 1243 bits (3215), Expect = 0.0
Identities = 628/632 (99%), Positives = 629/632 (99%)
Query: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG
Sbjct: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
Query: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG
Sbjct: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
Query: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE
Sbjct: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
Query: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV
Sbjct: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
Query: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ
Sbjct: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
Query: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA
Sbjct: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
Query: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK
Sbjct: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
Query: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG
Sbjct: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
Query: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE
Sbjct: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
Query: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR
Sbjct: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
Query: 601 NRASTAASSALGFSKSSSPSASLTENELLWEP 632
NRASTAASSALGFSKSSSPSASLTENE+ P
Sbjct: 601 NRASTAASSALGFSKSSSPSASLTENEVSDSP 632
Score = 29.6 bits (65), Expect = 9.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFG 268
K + D++W K+ Y WWP V + ++ K ++ V FFG
Sbjct: 877 KLHFQDIIWVKLGNYRWWPAEVCHPK--NVPPNIQKMKHEIGEFPVFFFG 924
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 1243 bits (3215), Expect = 0.0
Identities = 628/632 (99%), Positives = 629/632 (99%)
Query: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG
Sbjct: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
Query: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG
Sbjct: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
Query: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE
Sbjct: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
Query: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV
Sbjct: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
Query: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ
Sbjct: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
Query: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA
Sbjct: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
Query: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK
Sbjct: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
Query: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG
Sbjct: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
Query: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE
Sbjct: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
Query: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR
Sbjct: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
Query: 601 NRASTAASSALGFSKSSSPSASLTENELLWEP 632
NRASTAASSALGFSKSSSPSASLTENE+ P
Sbjct: 601 NRASTAASSALGFSKSSSPSASLTENEVSDSP 632
Score = 29.6 bits (65), Expect = 9.0
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFG 268
K + D++W K+ Y WWP V + ++ K ++ V FFG
Sbjct: 877 KLHFQDIIWVKLGNYRWWPAEVCHPK--NVPPNIQKMKHEIGEFPVFFFG 924
>gi|6594683 Wolf-Hirschhorn syndrome candidate 1 protein isoform 4
[Homo sapiens]
Length = 629
Score = 1242 bits (3214), Expect = 0.0
Identities = 627/628 (99%), Positives = 628/628 (100%)
Query: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG
Sbjct: 1 MEFSIKQSPLSVQSVVKCIKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEG 60
Query: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG
Sbjct: 61 VMQKFNGHDALPFIPADKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPIKNG 120
Query: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE
Sbjct: 121 SPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLE 180
Query: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV
Sbjct: 181 QGLVEAALVSKISSPSDKKIPAKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMV 240
Query: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ
Sbjct: 241 SADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQ 300
Query: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA
Sbjct: 301 APTKAEKIKLLKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVA 360
Query: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK
Sbjct: 361 KEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESHPDIGK 420
Query: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG
Sbjct: 421 STPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASG 480
Query: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE
Sbjct: 481 EEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAE 540
Query: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR
Sbjct: 541 AEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKR 600
Query: 601 NRASTAASSALGFSKSSSPSASLTENEL 628
NRASTAASSALGFSKSSSPSASLTENE+
Sbjct: 601 NRASTAASSALGFSKSSSPSASLTENEV 628
>gi|13699811 WHSC1L1 protein isoform long [Homo sapiens]
Length = 1437
Score = 222 bits (566), Expect = 7e-58
Identities = 171/549 (31%), Positives = 262/549 (47%), Gaps = 70/549 (12%)
Query: 111 PPNTTPIKNGSPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRK 170
P P K GSPEIKLKITKT NG+ LFESS+CGD +V SE K E++ + RK
Sbjct: 140 PQTVIPKKTGSPEIKLKITKTIQNGRELFESSLCGDLLNEVQASEHTKSKHESR-KEKRK 198
Query: 171 RSIKYDSLLEQGLVEAALVS-----------KISSPSDK--KIPAKKESCP--------- 208
+S K+DS + + ++ + S+K + P KE P
Sbjct: 199 KSNKHDSSRSEERKSHKIPKLEPEEQNRPNERVDTVSEKPREEPVLKEEAPVQPILSSVP 258
Query: 209 ----NTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHV 264
+TG +K+ VGDLVWSKV YPWWPCMVS+DP L +TK+ + AR+YHV
Sbjct: 259 TTEVSTG------VKFQVGDLVWSKVGTYPWWPCMVSSDPQLEVHTKIN--TRGAREYHV 310
Query: 265 QFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEM 324
QFF + PERAW+ EK + ++G Q+E+L E+ KQA +EK K+ KP + RAQW++
Sbjct: 311 QFFSNQPERAWVHEKRVREYKGHKQYEELLAEATKQASNHSEKQKIRKPRPQRERAQWDI 370
Query: 325 GIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAA 384
GI AE+A M+ EER ++TF+Y+ Q AK++ + + + V
Sbjct: 371 GIAHAEKALKMTREERIEQYTFIYIDKQPEEALSQAKKSVASKTEVKKTRRPRSVLNTQP 430
Query: 385 E--NPKSVREECIPMKRRRRAKLCSSAETLESHPDIGKSTPQKTAEADPRRGVGSPPGRK 442
E N V + RR ++ ++ E P + KTA A R+ + +
Sbjct: 431 EQTNAGEVASSLSSTEIRRHSQRRHTSAEEEEPPPV--KIAWKTAAA--RKSLPASITMH 486
Query: 443 KTTVSMPRSRKGDAASQFLVFC-------QKHRDEVVAEHPDASGEEIEELLRSQWSLL- 494
K ++ + + VF K D+ V G + E +R Q L+
Sbjct: 487 KGSLDLQKCNMSPVVKIEQVFALQNATGDGKFIDQFVYS-TKGIGNKTEISVRGQDRLII 545
Query: 495 -SEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAEAEDTPRKRLRTDK 553
+ QR T+ ++ +P +G+V K++ + R + +E + E P+K+++ +
Sbjct: 546 STPNQRNEKPTQ-SVSSPEATSGSTGSVEKKQQRRSIRTRSESEKS-TEVVPKKKIKKE- 602
Query: 554 HSLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGF 613
+ +T+ T +T Q +SD+CKPLKKR+RAST
Sbjct: 603 ----QVETVPQATVKTG------------LQKGASEISDSCKPLKKRSRASTDVEMTSSA 646
Query: 614 SKSSSPSAS 622
+ +S S S
Sbjct: 647 YRDTSDSDS 655
Score = 35.4 bits (80), Expect = 0.16
Identities = 44/232 (18%), Positives = 88/232 (37%), Gaps = 44/232 (18%)
Query: 219 KYNVGDLVWSKVSGYPWWP---CMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAW 275
K + +VW K+ Y WWP C + PL ++G K + V FFG + + W
Sbjct: 957 KLHYKQIVWVKLGNYRWWPAEICNPRSVPL-----NIQGLKHDLGDFPVFFFG-SHDYYW 1010
Query: 276 IFEKSLVAF--------EGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
+ + + + EG+ K +++ ++A + +++K
Sbjct: 1011 VHQGRVFPYVEGDKSFAEGQTSINKTFKKALEEAAKRFQELK-----------------A 1053
Query: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNP-QVAKEAGIAAESLGEMAESSGVSEEAAEN 386
Q E ++ +E+ K H+ +V + I L E+ + + A EN
Sbjct: 1054 QRESKEALEIEKNSRK-----PPPYKHIKANKVIGKVQIQVADLSEIPRCN--CKPADEN 1106
Query: 387 PKSVREECI--PMKRRRRAKLCSSAETLESHPDIGKSTPQKTAEADPRRGVG 436
P + EC+ ++ ++C + + ++ + P RRG G
Sbjct: 1107 PCGLESECLNRMLQYECHPQVCPAGDRCQNQCFTKRLYPDAEIIKTERRGWG 1158
>gi|13699813 WHSC1L1 protein isoform short [Homo sapiens]
Length = 645
Score = 202 bits (514), Expect = 8e-52
Identities = 155/500 (31%), Positives = 241/500 (48%), Gaps = 58/500 (11%)
Query: 111 PPNTTPIKNGSPEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRK 170
P P K GSPEIKLKITKT NG+ LFESS+CGD +V SE K E++ + RK
Sbjct: 140 PQTVIPKKTGSPEIKLKITKTIQNGRELFESSLCGDLLNEVQASEHTKSKHESR-KEKRK 198
Query: 171 RSIKYDSLLEQGLVEAALVS-----------KISSPSDK--KIPAKKESCP--------- 208
+S K+DS + + ++ + S+K + P KE P
Sbjct: 199 KSNKHDSSRSEERKSHKIPKLEPEEQNRPNERVDTVSEKPREEPVLKEEAPVQPILSSVP 258
Query: 209 ----NTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHV 264
+TG +K+ VGDLVWSKV YPWWPCMVS+DP L +TK+ + AR+YHV
Sbjct: 259 TTEVSTG------VKFQVGDLVWSKVGTYPWWPCMVSSDPQLEVHTKIN--TRGAREYHV 310
Query: 265 QFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEM 324
QFF + PERAW+ EK + ++G Q+E+L E+ KQA +EK K+ KP + RAQW++
Sbjct: 311 QFFSNQPERAWVHEKRVREYKGHKQYEELLAEATKQASNHSEKQKIRKPRPQRERAQWDI 370
Query: 325 GIVQAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAA 384
GI AE+A M+ EER ++TF+Y+ Q AK++ + + + V
Sbjct: 371 GIAHAEKALKMTREERIEQYTFIYIDKQPEEALSQAKKSVASKTEVKKTRRPRSVLNTQP 430
Query: 385 E--NPKSVREECIPMKRRRRAKLCSSAETLESHPDIGKSTPQKTAEADPRRGVGSPPGRK 442
E N V + RR ++ ++ E P + KTA A R+ + +
Sbjct: 431 EQTNAGEVASSLSSTEIRRHSQRRHTSAEEEEPPPV--KIAWKTAAA--RKSLPASITMH 486
Query: 443 KTTVSMPRSRKGDAASQFLVFC-------QKHRDEVVAEHPDASGEEIEELLRSQWSLL- 494
K ++ + + VF K D+ V G + E +R Q L+
Sbjct: 487 KGSLDLQKCNMSPVVKIEQVFALQNATGDGKFIDQFVYS-TKGIGNKTEISVRGQDRLII 545
Query: 495 -SEKQRARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQDPTEDAEAEDTPRKRLRTDK 553
+ QR T+ ++ +P +G+V K++ + R + +E + E P+K+++ +
Sbjct: 546 STPNQRNEKPTQ-SVSSPEATSGSTGSVEKKQQRRSIRTRSESEKS-TEVVPKKKIKKE- 602
Query: 554 HSLRKRDTITDKTARTSSYK 573
+ +T+ T +T K
Sbjct: 603 ----QVETVPQATVKTGLQK 618
>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
[Homo sapiens]
Length = 2427
Score = 98.6 bits (244), Expect = 2e-20
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 16/143 (11%)
Query: 193 SSPSDKKIP---AKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSY 249
SS + +++P KK+S P LKY VGDL+W+K PWWPC + +DPL++++
Sbjct: 31 SSSTSQELPFCQPKKKSTP---------LKYEVGDLIWAKFKRRPWWPCRICSDPLINTH 81
Query: 250 TKLK-GQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKI 308
+K+K ++ RQY+V+ FGD ERAW+ K++V FEG QFE+L + K ++
Sbjct: 82 SKMKVSNRRPYRQYYVEAFGDPSERAWVAGKAIVMFEGRHQFEEL---PVLRRRGKQKEK 138
Query: 309 KLLKPISGKLRAQWEMGIVQAEE 331
+ K+ ++WE + AE+
Sbjct: 139 GYRHKVPQKILSKWEASVGLAEQ 161
Score = 30.0 bits (66), Expect = 6.9
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 224 DLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVA 283
++VW KV Y WWP + + S + + ++ V FFG + + W + +
Sbjct: 1489 EIVWVKVGRYRWWPAEICHPRAVPS--NIDKMRHDVGEFPVLFFG-SNDYLWTHQARVFP 1545
Query: 284 F-EG------------EGQFEKLCQESAKQ-APTKAEK 307
+ EG +G ++K QE+A + KA+K
Sbjct: 1546 YMEGDVSSKDKMGKGVDGTYKKALQEAAARFEELKAQK 1583
>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
[Homo sapiens]
Length = 2696
Score = 98.6 bits (244), Expect = 2e-20
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 16/143 (11%)
Query: 193 SSPSDKKIP---AKKESCPNTGRDKDHLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSY 249
SS + +++P KK+S P LKY VGDL+W+K PWWPC + +DPL++++
Sbjct: 300 SSSTSQELPFCQPKKKSTP---------LKYEVGDLIWAKFKRRPWWPCRICSDPLINTH 350
Query: 250 TKLK-GQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKI 308
+K+K ++ RQY+V+ FGD ERAW+ K++V FEG QFE+L + K ++
Sbjct: 351 SKMKVSNRRPYRQYYVEAFGDPSERAWVAGKAIVMFEGRHQFEEL---PVLRRRGKQKEK 407
Query: 309 KLLKPISGKLRAQWEMGIVQAEE 331
+ K+ ++WE + AE+
Sbjct: 408 GYRHKVPQKILSKWEASVGLAEQ 430
Score = 39.3 bits (90), Expect = 0.011
Identities = 55/213 (25%), Positives = 83/213 (38%), Gaps = 36/213 (16%)
Query: 24 APEILGS--ANGKTPSCEVNRECSVFLSKAQLSSSLQEGVMQKFNGHDALP-FIPADKLK 80
APE S NG++ E C++ LS G Q G D+ +IP +L+
Sbjct: 24 APEDKDSPFGNGQSNFSEPLNGCTMQLSTVS-------GTSQNAYGQDSPSCYIPLRRLQ 76
Query: 81 DLTSRVFNGE--PGAHDAKLRFESQEMKG--IGTPPNTT---------------PIKNGS 121
DL S + N E G+ D F+ E TP T P N S
Sbjct: 77 DLASMI-NVEYLNGSADGSESFQDPEKSDSRAQTPIVCTSLSPGGPTALAMKQEPSCNNS 135
Query: 122 PEIKLKITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKA------RRNRKRSIKY 175
PE+++K+TKT NG FE+ C D A S+ + E+++ + Y
Sbjct: 136 PELQVKVTKTIKNGFLHFENFTCVDDADVDSEMDPEQPVTEDESIEEIFEETQTNATCNY 195
Query: 176 DSLLEQGLVEAALVSKISSPSDKKIPAKKESCP 208
++ E G+ A + S+P + K P
Sbjct: 196 ETKSENGVKVAMGSEQDSTPESRHGAVKSPFLP 228
Score = 30.0 bits (66), Expect = 6.9
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 224 DLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVA 283
++VW KV Y WWP + + S + + ++ V FFG + + W + +
Sbjct: 1758 EIVWVKVGRYRWWPAEICHPRAVPS--NIDKMRHDVGEFPVLFFG-SNDYLWTHQARVFP 1814
Query: 284 F-EG------------EGQFEKLCQESAKQ-APTKAEK 307
+ EG +G ++K QE+A + KA+K
Sbjct: 1815 YMEGDVSSKDKMGKGVDGTYKKALQEAAARFEELKAQK 1852
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 72.0 bits (175), Expect = 2e-12
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 220 YNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEK 279
++ GDLVW+K+ GYPWWPC+V P ++ + KG KS R HVQFF D+P R W+ ++
Sbjct: 90 FSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIREKG--KSVR-VHVQFFDDSPTRGWVSKR 146
Query: 280 SLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIVQAEEAA----SM 335
L + G +E+ K + K ++L+ + A + I + E A S
Sbjct: 147 LLKPYTGSKS-----KEAQKGGHFYSAKPEILRAMQRADEALNKDKIKRLELAVCDEPSE 201
Query: 336 SVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSE 381
EE + + YV D+ + ++ E + ++ G S + +
Sbjct: 202 PEEEEEMEVGTTYVTDKSEEDNEIESEEEVQPKTQGSRRSSRQIKK 247
>gi|94721344 zinc finger, CW type with PWWP domain 1 [Homo sapiens]
Length = 648
Score = 65.5 bits (158), Expect = 1e-10
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 19/193 (9%)
Query: 210 TGRDKD-HLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKS-ARQYHVQFF 267
TG + D Y G ++W+K GYPWWP M+ +DP L Y S +YHV FF
Sbjct: 304 TGLESDVAYASYIPGSIIWAKQYGYPWWPGMIESDPDLGEYFLFTSHLDSLPSKYHVTFF 363
Query: 268 GDAPERAWIFEKSLVAFEGEGQFEKLCQESAKQAPTKAEKIKLLKPISGKLRAQWEMGIV 327
G+ RAWI L F++L E + ++K + + ++
Sbjct: 364 GETVSRAWIPVNML------KNFQELSLE-----------LSVMKKRRNDCSQKLGVALM 406
Query: 328 QAEEAASMSVEERKAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAESSGVSEEAAENP 387
A+EA +S++ER F F + + N + S G E EE +
Sbjct: 407 MAQEAEQISIQERVNLFGFWSRFNGSNSNGERKDLQLSGLNSPGSCLEKKEKEEELEKEE 466
Query: 388 KSVREECIPMKRR 400
+ +P+++R
Sbjct: 467 GEKTDPILPIRKR 479
>gi|4758516 hepatoma-derived growth factor isoform a [Homo sapiens]
Length = 240
Score = 50.8 bits (120), Expect = 4e-06
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 16/219 (7%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFE 278
+Y GDLV++K+ GYP WP + P K +A +Y V FFG E A++
Sbjct: 9 EYKCGDLVFAKMKGYPHWPARIDEMP-------EAAVKSTANKYQVFFFG-THETAFLGP 60
Query: 279 KSLVAF-EGEGQFEKLCQESA-KQAPTKAEKIKLLKPISGKLRAQWEMGIVQAE---EAA 333
K L + E + +F K + + + E +K SG +Q + + + E EAA
Sbjct: 61 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVK-ASGYQSSQKKSCVEEPEPEPEAA 119
Query: 334 SMSVEER-KAKFTFLYVGDQLHLNPQVAK-EAGIAAESLGEMAESSGVSEEAAENPKSVR 391
+++ A+ + G + P K E G G++ E S + AENP+
Sbjct: 120 EGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEE 179
Query: 392 EECIPMKRRRRAKLCSSAETLESHPDIGKSTPQKTAEAD 430
+E ++ R + + S P G+ PQ+ E +
Sbjct: 180 KEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEE 218
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 44.3 bits (103), Expect = 4e-04
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 438 PPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEK 497
P G KK P + K S F +FC +HR ++ +EHP S + + L WS S K
Sbjct: 81 PKGDKKGKKKDPNAPKRPP-SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK 139
Query: 498 QRARYNTKFAL--------VAPVQAEEDS-------GNVNGKKRNHTKRIQDPTEDAEAE 542
+ Y K A +A +A+ S G G K+ + ++ E+ E E
Sbjct: 140 DKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDE 199
Query: 543 D 543
D
Sbjct: 200 D 200
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 44.3 bits (103), Expect = 4e-04
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 438 PPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEK 497
P G KK P + K S F +FC +HR ++ +EHP S + + L WS S K
Sbjct: 81 PKGDKKGKKKDPNAPKRPP-SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK 139
Query: 498 QRARYNTKFAL--------VAPVQAEEDS-------GNVNGKKRNHTKRIQDPTEDAEAE 542
+ Y K A +A +A+ S G G K+ + ++ E+ E E
Sbjct: 140 DKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDE 199
Query: 543 D 543
D
Sbjct: 200 D 200
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 44.3 bits (103), Expect = 4e-04
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 438 PPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEK 497
P G KK P + K S F +FC +HR ++ +EHP S + + L WS S K
Sbjct: 81 PKGDKKGKKKDPNAPKRPP-SAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK 139
Query: 498 QRARYNTKFAL--------VAPVQAEEDS-------GNVNGKKRNHTKRIQDPTEDAEAE 542
+ Y K A +A +A+ S G G K+ + ++ E+ E E
Sbjct: 140 DKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDE 199
Query: 543 D 543
D
Sbjct: 200 D 200
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 43.9 bits (102), Expect = 5e-04
Identities = 117/615 (19%), Positives = 233/615 (37%), Gaps = 64/615 (10%)
Query: 19 IKMKQAPEILGSANGKTPSCEVNRECSVFLSKAQLSSSLQEGVMQKFNGHDALPFIPA-- 76
++ KQ E LG T EVN + SV +A+ +++ + G D F+
Sbjct: 50 LRQKQEEESLGQV---TDQVEVNAQNSVPDEEAKTTTTNTQ-----VEGDDEAAFLERLA 101
Query: 77 -------DKLKDLTSRVFNGEPGAHDAKLRFESQEMKGIGTPPNTTPI--KNGSPEIKLK 127
+L++ R +P DA L S+ M+ TT K+ S + + +
Sbjct: 102 RREERRQKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAENETTEKEEKSESRQERYE 161
Query: 128 ITKTYMNGKPLFESSICGDSAADVSQSEENGQKPENKARRNRKRSIKYDSLLEQGLVEAA 187
I +T K ++ + D+ + + +E ++ E K +R + + ++E+ E+
Sbjct: 162 IEETETVTKS-YQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQVEVMVEEKTTESQ 220
Query: 188 LVSKISSPSDKKIPA---KKESCPNTGRDK-DHLLKYNVGD-----LVWSKVSGYPWWPC 238
+ + S + +I + K+E G D+ H K D +++
Sbjct: 221 EETVVMSLKNGQISSEEPKQEEEREQGSDEISHHEKMEEEDKERAEAERARLEAEERERI 280
Query: 239 MVSADP-LLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSLVAFEGEGQFEKLCQES 297
D + +++ ++K+A Q + +A ER + E+ A E + + E
Sbjct: 281 KAEQDKKIADERARIEAEEKAAAQERER--REAEERERMREEEKRAAEERQRIK----EE 334
Query: 298 AKQAPTKAEKIKL--LKPISGKLRAQWEMGIVQAEEAASMSVEERKAKFTFLYVGDQLHL 355
K+A + ++IK + + R + E E + + EE KAK QL
Sbjct: 335 EKRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRARAEEEEKAKVEEQKRNKQLEE 394
Query: 356 NPQVAKEAGIAAESLGEMAESSGVSEEAAENPKSVREECIPMKRRRRAKLCSSAETLESH 415
+E I E + + E V+E+ A+ K + K+ + E L+
Sbjct: 395 KKHAMQETKIKGEKVEQKIEGKWVNEKKAQEDKLQTAVLKKQGEEKGTKVQAKREKLQED 454
Query: 416 PDIGKSTPQKTA----EADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEV 471
K K + +P+ V S RKK + +S+ G+ F+ KH +
Sbjct: 455 KPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEV-KSQNGE----FMTHKLKHTENT 509
Query: 472 VAEHPDASGEEIEELLRSQW----SLLSEKQRARYNTKFALVAPVQAEEDSGNVN----G 523
+ + + +E + L E +R R T+ ++ ++ +
Sbjct: 510 FSRPGGRASVDTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELK 569
Query: 524 KKRNHTKRIQDPTEDAEAEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEAASSLKS 583
KKR +++ + E ++ ++LR ++ R ++ I + A A+ +
Sbjct: 570 KKREERRKVLEEEEQRRKQEEADRKLREEEEKRRLKEEIERRRAE---------AAEKRQ 620
Query: 584 QAATKNLSDACKPLK 598
+ LSD KP K
Sbjct: 621 KMPEDGLSDDKKPFK 635
>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
sapiens]
Length = 845
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269
++ +GDLVW K+ G+ WWP MV + + G + VQ+FGD
Sbjct: 234 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 278
>gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [Homo
sapiens]
Length = 770
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269
++ +GDLVW K+ G+ WWP MV + + G + VQ+FGD
Sbjct: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
>gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [Homo
sapiens]
Length = 833
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269
++ +GDLVW K+ G+ WWP MV + + G + VQ+FGD
Sbjct: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
>gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Homo
sapiens]
Length = 853
Score = 42.4 bits (98), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 219 KYNVGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGD 269
++ +GDLVW K+ G+ WWP MV + + G + VQ+FGD
Sbjct: 222 EFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMSGMR------WVQWFGD 266
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 458 SQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEED 517
S +F ++ R ++ E P+ S E+ LL W+ LSEK++A+Y + A + Q+E
Sbjct: 375 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAAL-KAQSERK 433
Query: 518 SGNVNGKKRNHTKRIQDPTEDAEAEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEA 577
G G++ K + P AE+ ++ + D + K D + A ++ ME
Sbjct: 434 PG---GEREERGKLPESP---KRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEK 487
Query: 578 ASSL 581
L
Sbjct: 488 KEKL 491
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 458 SQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEED 517
S +F ++ R ++ E P+ S E+ LL W+ LSEK++A+Y + A + Q+E
Sbjct: 375 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAAL-KAQSERK 433
Query: 518 SGNVNGKKRNHTKRIQDPTEDAEAEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEA 577
G G++ K + P AE+ ++ + D + K D + A ++ ME
Sbjct: 434 PG---GEREERGKLPESP---KRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEK 487
Query: 578 ASSL 581
L
Sbjct: 488 KEKL 491
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 42.4 bits (98), Expect = 0.001
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 458 SQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEED 517
S +F ++ R ++ E P+ S E+ LL W+ LSEK++A+Y + A + Q+E
Sbjct: 412 SAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAREAAL-KAQSERK 470
Query: 518 SGNVNGKKRNHTKRIQDPTEDAEAEDTPRKRLRTDKHSLRKRDTITDKTARTSSYKAMEA 577
G G++ K + P AE+ ++ + D + K D + A ++ ME
Sbjct: 471 PG---GEREERGKLPESP---KRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEK 524
Query: 578 ASSL 581
L
Sbjct: 525 KEKL 528
Score = 34.7 bits (78), Expect = 0.28
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 13/216 (6%)
Query: 439 PGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEKQ 498
P + K P K F F +K R + HP+ S ++ ++L ++ L EK+
Sbjct: 99 PYKGKKLKKHPDFPKKPLTPYFRFFMEK-RAKYAKLHPEMSNLDLTKILSKKYKELPEKK 157
Query: 499 RARYNTKFALVAPVQAEEDSGNVNGKKRNHTKRIQD--PTEDAEAEDTPRKRLRT--DKH 554
+ +Y F + +E N+ + +H IQ+ ++ E TP++ T K
Sbjct: 158 KMKYIQDFQR----EKQEFERNLARFREDHPDLIQNAKKSDIPEKPKTPQQLWYTHEKKV 213
Query: 555 SLRKRDTITDKTARTSSYKAMEAASSLKSQAATKNLSDACKPLKKRNRASTAASSALGFS 614
L+ R T K + S K S K + K ++ R L S
Sbjct: 214 YLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEEIMRDYIQKHPELNIS 273
Query: 615 KSSSPSASLTENEL----LWEPTPVKLDLNPAALYC 646
+ ++LT+ E ++ P K N +LYC
Sbjct: 274 EEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYC 309
>gi|148839376 PWWP domain containing 2 isoform 1 [Homo sapiens]
Length = 590
Score = 42.4 bits (98), Expect = 0.001
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 15/100 (15%)
Query: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSL 281
VGD+VW K+ G+PWWP V L S + + + S R+ V +FG +P +++ L
Sbjct: 490 VGDIVWGKIHGFPWWPARV----LDISLGQKEDGEPSWREAKVSWFG-SPTTSFLSISKL 544
Query: 282 VAF----------EGEGQFEKLCQESAKQAPTKAEKIKLL 311
F + +G + K E+A A A +I+ L
Sbjct: 545 SPFSEFFKLRFNRKKKGMYRKAITEAANAARHVAPEIREL 584
>gi|83715964 high-mobility group 20B [Homo sapiens]
Length = 317
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 428 EADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELL 487
E +P + G P G+K+ + +P K ++ F + R+++ HPD EI ++L
Sbjct: 47 EEEPVKKRGWPKGKKRKKI-LPNGPKAPVTG-YVRFLNERREQIRTRHPDLPFPEITKML 104
Query: 488 RSQWSLLSEKQRARY 502
++WS L ++ RY
Sbjct: 105 GAEWSKLQPTEKQRY 119
>gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens]
Length = 553
Score = 41.6 bits (96), Expect = 0.002
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 222 VGDLVWSKVSGYPWWPCMVSADPLLHSYTKLKGQKKSARQYHVQFFGDAPERAWIFEKSL 281
+GDLVW K+ YP WP + P K +G+K + V+FFG + AWI + L
Sbjct: 8 LGDLVWGKLGRYPPWPGKIVNPP--KDLKKPRGKK----CFFVKFFG-TEDHAWIKVEQL 60
Query: 282 VAFEGEGQFEKLCQESAKQAPTKAEKI-KLLKPISGKLRAQWEMGIVQAEEAASMSVEER 340
+ + E + K+ + + + L+ GK Q ++ S EER
Sbjct: 61 KPYHAHKE-EMIKINKGKRFQQAVDAVEEFLRRAKGK--DQTSSHNSSDDKNRRNSSEER 117
Query: 341 KAKFTFLYVGDQLHLNPQVAKEAGIAAESLGEMAE--SSGVSEEAAENPKSVREECIPMK 398
+ GD+ +++ G +++GE + SSG SE +++P +E P K
Sbjct: 118 SRPNS----GDE---KRKLSLSEGKVKKNMGEGKKRVSSGSSERGSKSPLKRAQEQSPRK 170
Query: 399 RRRRAK 404
R R K
Sbjct: 171 RGRPPK 176
>gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
Length = 601
Score = 41.2 bits (95), Expect = 0.003
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 415 HPDIGKSTPQKTAEADPRRGVGSPPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAE 474
H D +K E D R G P +K S + VFC+++R +VA+
Sbjct: 382 HTDGHSEKKKKKEEKDKERERGEKPKKKNM-------------SAYQVFCKEYRVTIVAD 428
Query: 475 HPDASGEEIEELLRSQWSLLSEKQRARYNTKFALVAPVQAEEDSGNVNGK 524
HP E+ + L W L EK + + K + Q + ++ V K
Sbjct: 429 HPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRK 478
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 41.2 bits (95), Expect = 0.003
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 438 PPGRKKTTVSMPRSRKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEK 497
P G KK P + K + FL FC ++R ++ EHP S +++ + L W+ +
Sbjct: 755 PKGEKKKKFKDPNAPKRPPLAFFL-FCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAA 813
Query: 498 QRARYNTKFALV-----APVQAEEDSGNVNGKKRNHTKRIQDPTEDAEAED 543
+ Y K A + + A G N K+ K + + E ED
Sbjct: 814 DKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEED 864
>gi|217035121 HMG-BOX transcription factor BBX isoform 1 [Homo
sapiens]
Length = 941
Score = 40.8 bits (94), Expect = 0.004
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 449 PRSRKGDAASQFLVFCQKHRDEVVAEHPDASGEEIEELLRSQWSLLSEKQRARY 502
P R + FL+FC++HR V EHP ++L W++L K++ +Y
Sbjct: 76 PEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLDPKEKQKY 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,024,054
Number of Sequences: 37866
Number of extensions: 1135137
Number of successful extensions: 3893
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 3619
Number of HSP's gapped (non-prelim): 416
length of query: 647
length of database: 18,247,518
effective HSP length: 109
effective length of query: 538
effective length of database: 14,120,124
effective search space: 7596626712
effective search space used: 7596626712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.