Guide to the Human Genome
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Name: ZCWPW1 Sequence: fasta or formatted (648aa) NCBI GI: 94721344
Description:

zinc finger, CW type with PWWP domain 1

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         38           2
 C cysteine            2.2         14           1
 D aspartate           4.6         30           1
 E glutamate          10.2         66           3
 F phenylalanine       2.6         17           2
 G glycine             7.7         50           2
 H histidine           1.4          9           1
 I isoleucine          3.7         24           2
 K lysine              9.9         64           3
 L leucine             7.6         49           2
 M methionine          1.9         12           2
 N asparagine          3.7         24           1
 P proline             6.6         43           2
 Q glutamine           6.0         39           2
 R arginine            5.1         33           2
 S serine              9.6         62           2
 T threonine           4.6         30           2
 V valine              4.0         26           2
 W tryptophan          1.5         10           2
 Y tyrosine            1.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger, CW type with PWWP domain 1 
ZCWPW2                0.042   zinc finger, CW type with PWWP domain 2 
WHSC1                 0.031   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.031   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.031   Wolf-Hirschhorn syndrome candidate 1 protein isoform ...
WHSC1                 0.031   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.031   Wolf-Hirschhorn syndrome candidate 1 protein isoform...
WHSC1                 0.031   Wolf-Hirschhorn syndrome candidate 1 protein isofor...
MORC4                 0.026   zinc finger, CW type with coiled-coil domain 2 isof...
MORC4                 0.026   zinc finger, CW type with coiled-coil domain 2 isof...
MSH6                  0.022   mutS homolog 6 
WHSC1L1               0.022   WHSC1L1 protein isoform long 
WHSC1L1               0.022   WHSC1L1 protein isoform short 
MORC3                 0.019   MORC family CW-type zinc finger 3 
ZMYND8                0.017   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.017   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.017   zinc finger, MYND-type containing 8 isoform b 
NSD1                  0.015   nuclear receptor binding SET domain protein 1 isofor...
NSD1                  0.015   nuclear receptor binding SET domain protein 1 isofor...
NEFM                  0.015   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.015   neurofilament, medium polypeptide 150kDa isoform 2 ...
TULP1                 0.014   tubby like protein 1 
ZCCHC11               0.012   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.012   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.012   zinc finger, CCHC domain containing 11 isoform c [Ho...
NEFH                  0.012   neurofilament, heavy polypeptide 200kDa 
BOD1L                 0.012   biorientation of chromosomes in cell division 1-like...
ZC3H13                0.012   zinc finger CCCH-type containing 13 
SMTNL1                0.012   smoothelin-like 1 
ADD2                  0.012   adducin 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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