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Search of human proteins with 197927236
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197927236 hypothetical protein LOC729627 [Homo sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197927236 hypothetical protein LOC729627 [Homo sapiens] 543 e-155
gi|61966747 hypothetical protein LOC389151 [Homo sapiens] 473 e-134
gi|197927231 hypothetical protein LOC389152 [Homo sapiens] 432 e-121
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 45 9e-05
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 42 4e-04
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 41 0.001
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 41 0.001
gi|60460889 Myb protein P42POP [Homo sapiens] 41 0.001
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 0.001
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 40 0.002
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 40 0.003
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 40 0.003
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 40 0.003
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 40 0.003
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 39 0.004
gi|169172682 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|169172911 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|169172807 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|33356148 formin-like 1 [Homo sapiens] 39 0.006
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 38 0.008
gi|194097341 period 1 [Homo sapiens] 38 0.010
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 38 0.010
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 37 0.014
gi|40807477 retinoic acid induced 1 [Homo sapiens] 37 0.014
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 37 0.014
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 37 0.014
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 37 0.014
gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo... 37 0.018
gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo ... 37 0.018
gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo ... 37 0.018
>gi|197927236 hypothetical protein LOC729627 [Homo sapiens]
Length = 266
Score = 543 bits (1399), Expect = e-155
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MGSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSI 60
MGSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSI
Sbjct: 1 MGSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSI 60
Query: 61 VVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEVLLSSVDERSGAQDDSSA 120
VVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEVLLSSVDERSGAQDDSSA
Sbjct: 61 VVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEVLLSSVDERSGAQDDSSA 120
Query: 121 GLEVDVFLGALREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLY 180
GLEVDVFLGALREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLY
Sbjct: 121 GLEVDVFLGALREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLY 180
Query: 181 SSARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRV 240
SSARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRV
Sbjct: 181 SSARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRV 240
Query: 241 GSPGPHAHPPLPKRPPCKARRRLFQE 266
GSPGPHAHPPLPKRPPCKARRRLFQE
Sbjct: 241 GSPGPHAHPPLPKRPPCKARRRLFQE 266
>gi|61966747 hypothetical protein LOC389151 [Homo sapiens]
Length = 265
Score = 473 bits (1218), Expect = e-134
Identities = 239/265 (90%), Positives = 243/265 (91%), Gaps = 1/265 (0%)
Query: 1 MGSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSI 60
M SRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPR APSLEDPAG PAV ALTSI
Sbjct: 1 MVSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRAAPSLEDPAGDPAVDALTSI 60
Query: 61 VVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEVLLSSVDERSGAQDDSSA 120
VVLAAGCALRVPLDDVDLVLE PTSILRVSL GHTLILIPEVLLSSVDERSGAQ DSSA
Sbjct: 61 VVLAAGCALRVPLDDVDLVLEPAPTSILRVSLGGHTLILIPEVLLSSVDERSGAQHDSSA 120
Query: 121 GLEVDVFLGALREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLY 180
GLEVDVFLGA+REDVVVE E FCASVPEIAAQEEAYEEDADPEFPEL+MDS GSAAGLY
Sbjct: 121 GLEVDVFLGAVREDVVVELE-FCASVPEIAAQEEAYEEDADPEFPELRMDSPTGSAAGLY 179
Query: 181 SSARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRV 240
S+RSMF PYREGPIPEPCALAPNPSSE SP P FD EFRLLEPVPSSPLQPLPPSP V
Sbjct: 180 PSSRSMFIPYREGPIPEPCALAPNPSSERRSPRPIFDLEFRLLEPVPSSPLQPLPPSPCV 239
Query: 241 GSPGPHAHPPLPKRPPCKARRRLFQ 265
GSPGPHA PLP+RPPCKARRRLFQ
Sbjct: 240 GSPGPHARSPLPERPPCKARRRLFQ 264
>gi|197927231 hypothetical protein LOC389152 [Homo sapiens]
Length = 262
Score = 432 bits (1112), Expect = e-121
Identities = 225/266 (84%), Positives = 231/266 (86%), Gaps = 4/266 (1%)
Query: 1 MGSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSI 60
MGSRP SPSA APWWGQQPGGPGPAKR RLEEPAGPE R APS EDPAGTPAV ALTS+
Sbjct: 1 MGSRPCSPSACLAPWWGQQPGGPGPAKRSRLEEPAGPESRAAPSPEDPAGTPAVDALTSM 60
Query: 61 VVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEVLLSSVDERSGAQDDSSA 120
VVL AGCALRVPL+DVDLVLEL P S+LRVSL GHTLI+IPEVLLSSVDE SGAQ D SA
Sbjct: 61 VVLDAGCALRVPLEDVDLVLELAPMSVLRVSLGGHTLIVIPEVLLSSVDECSGAQGDWSA 120
Query: 121 GLEVDVFLGALREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLY 180
GLEVDVFLGA EDVVVEQEV CASVPEIAA+EEAYEEDAD EFPEL MDSAAGSAAGLY
Sbjct: 121 GLEVDVFLGAHGEDVVVEQEV-CASVPEIAAEEEAYEEDADSEFPELWMDSAAGSAAGLY 179
Query: 181 SSARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRV 240
SARSMFSPYREGPI PCALAPNPSSE SP P FD EF LLEPVPSSPLQPLPPSP
Sbjct: 180 PSARSMFSPYREGPIRGPCALAPNPSSERRSPRPIFDLEFHLLEPVPSSPLQPLPPSP-- 237
Query: 241 GSPGPHAHPPLPKRPPCKARRRLFQE 266
SPGPHA P LP+RPPCK RRRLFQE
Sbjct: 238 -SPGPHARPELPERPPCKVRRRLFQE 262
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 44.7 bits (104), Expect = 9e-05
Identities = 59/233 (25%), Positives = 82/233 (35%), Gaps = 15/233 (6%)
Query: 19 QPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSIVVLAAGCALRVPLDDVDL 78
QP GP + P P P AP P P+VG++ S + + + V
Sbjct: 639 QPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPM-PSAGPVPS 697
Query: 79 VLELPPTSILRVSLDGHTLILIPEVLLSSVD-ERSGAQDDSSAGLEVDVFLGALREDVVV 137
PPT+ + L L+ +P LL + R+G+ +D + +
Sbjct: 698 ARPGPPTTANHLGLSVPGLVSVPPRLLPGPENHRAGSNEDPI------LAPSGTPPPTIP 751
Query: 138 EQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLYSSARSMFSPYREGPIPE 197
E F VP A EE +D E L+ DS S + + P G P
Sbjct: 752 PDETFGGRVPRPAFVHYDKEEASDVEI-SLESDS-DDSVVIVPEGLPPLPPPPPSGATPP 809
Query: 198 PCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPP 250
P A P++ P E P PL P PP P PGP PP
Sbjct: 810 PIAPTGPPTASPPVPAKEEPEEL----PAAPGPLPP-PPPPPPPVPGPVTLPP 857
Score = 29.3 bits (64), Expect = 3.7
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 198 PCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQP-LPPSPRVGSPGPHAHPPLPKRP 255
P P P +P PF P F P+PS P P P G P P A P RP
Sbjct: 643 PTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAG-PMPSAGPVPSARP 700
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 42.4 bits (98), Expect = 4e-04
Identities = 31/76 (40%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 184 RSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSP 243
R + +P E P P P LAP+P+S P P L EP SPL PL SP P
Sbjct: 4904 RQLSAPPPEEPSPPPSPLAPSPASPPTEPLVEL-PTEPLAEPPVPSPL-PLASSPESARP 4961
Query: 244 GPHAHPP---LPKRPP 256
P A PP RPP
Sbjct: 4962 KPRARPPEEGEDSRPP 4977
Score = 36.2 bits (82), Expect = 0.031
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 185 SMFSPYREGPIPEPCALAPNPSSEGH-SPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSP 243
S FSP E P+ P P+P+ E SP P P L P SPL P PP SP
Sbjct: 510 SPFSPLEESPLSPPEESPPSPALETPLSPPPEASP---LSPPFEESPLSP-PPEELPTSP 565
Query: 244 GPHAH--PPLPKRPP 256
P A P P+ P
Sbjct: 566 PPEASRLSPPPEESP 580
Score = 36.2 bits (82), Expect = 0.031
Identities = 65/258 (25%), Positives = 88/258 (34%), Gaps = 37/258 (14%)
Query: 18 QQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSIVVLAAGCALRVPLDDVD 77
+ P P P + RL P P P + PA P +L S+ PL++
Sbjct: 677 ESPTSP-PPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSL-----------PLEESP 724
Query: 78 LVLELPPTSILRVSLDGHTLILIPEVL-LSSVDERSG----AQDDSSAGLEVDVFLGALR 132
L L LP L +G L PE LS E A++ + + L A+
Sbjct: 725 L-LPLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVP 783
Query: 133 EDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLYSSARSMFSPYRE 192
E+ + + A P ++ Q E E P+ E + S SP E
Sbjct: 784 EEPHLSPQ---AEGPHLSPQPE--ELHLSPQTEEPHLSPVPEEPCLSPQPEESHLSPQSE 838
Query: 193 GPIPEPCA-------------LAPNPSSEGHSPGPFFDPEFRLLEPVPSSP-LQPLPPSP 238
P P L+P P PG PE L P P P L PL P
Sbjct: 839 EPCLSPRPEESHLSPELEKPPLSPRPEKPPEEPGQCPAPEELPLFPPPGEPSLSPLLGEP 898
Query: 239 RVGSPGPHAHPPLPKRPP 256
+ PG PLP+ P
Sbjct: 899 ALSEPGEPPLSPLPEELP 916
Score = 36.2 bits (82), Expect = 0.031
Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 201 LAPNPSS-EGHSPGPFFDPEFRLLEPVPSSPLQPLPPS-PRVGSPG----PHAHPPLPKR 254
L P S E SPG P+ EP P+ L P PPS P + PG P+A PPL R
Sbjct: 2331 LTPRASQVEPQSPGLGLRPQ----EPPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPR 2386
Query: 255 P 255
P
Sbjct: 2387 P 2387
Score = 35.4 bits (80), Expect = 0.052
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 183 ARSMFSPYREGPI------------PEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSP 230
A +F P+ E P+ PE L+P P SP P P + P S
Sbjct: 596 ASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESP---MSPPPEVSR 652
Query: 231 LQPLPPSPRVGSP---GPHAHPP--LPKRPPCKARR 261
L PLP R+ P P + PP P PP +A R
Sbjct: 653 LSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASR 688
Score = 35.0 bits (79), Expect = 0.068
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 191 REGPIPEPCALAPNPSSEGHSPGP----FFDP--EFRLLEPVPSSPLQPLPPSPRVGSP- 243
R P PE ++P P SP P F P E L P SPL P P + R+ P
Sbjct: 571 RLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPP 630
Query: 244 --GPHAHPP--LPKRPPCKARR 261
P + PP P PP + R
Sbjct: 631 EDSPMSPPPEESPMSPPPEVSR 652
Score = 34.7 bits (78), Expect = 0.089
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 189 PYREGPI---PEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVG---S 242
P E P+ PE L+P P S SP LE P SP + PPSP + S
Sbjct: 488 PLEESPLSPPPEESPLSPPPESSPFSP----------LEESPLSPPEESPPSPALETPLS 537
Query: 243 PGPHAHPPLP 252
P P A P P
Sbjct: 538 PPPEASPLSP 547
Score = 34.7 bits (78), Expect = 0.089
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 183 ARSMFSPYREGPI---PEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPR 239
A + P+ E P+ PE +P P + SP P P + P SP+ P P + R
Sbjct: 542 ASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESP---MSPPPEESPMSPPPEASR 598
Query: 240 VGSP---GPHAHPP--LPKRPPCKARR 261
+ P P + PP P PP +A R
Sbjct: 599 LFPPFEESPLSPPPEESPLSPPPEASR 625
Score = 32.0 bits (71), Expect = 0.58
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 20/82 (24%)
Query: 183 ARSMFSPYREGPIPEPCALAP--------------NPSSEGHSPGPFFDPEFRLLEPVPS 228
A+ +P + P PE C P +P S+ S P P+ +
Sbjct: 2379 AQPPLTPRPQPPPPESCCALPPRSLPSDPFSRVPASPQSQSSSQSPLTP------RPLSA 2432
Query: 229 SPLQPLPPSPRVGSPGPHAHPP 250
P P +PR SP P++ PP
Sbjct: 2433 EAFCPSPVTPRFQSPDPYSRPP 2454
Score = 31.6 bits (70), Expect = 0.75
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 18/84 (21%)
Query: 194 PIPEPCALAPNPSSEGHSPGPFFD--------------PEFRLLE-PVPSSPLQPLPPSP 238
P PE +P P + SP P PE L+ P+ SPL PLP P
Sbjct: 673 PPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLLPLPEEP 732
Query: 239 RV--GSPGPHAHPPLPKRPPCKAR 260
++ S GPH P P+ P R
Sbjct: 733 QLCPRSEGPHL-SPRPEEPHLSPR 755
Score = 30.4 bits (67), Expect = 1.7
Identities = 25/79 (31%), Positives = 29/79 (36%), Gaps = 11/79 (13%)
Query: 189 PYREGPIPEPCALAPNPSSEGHSPGPFFDP------EFRLLEPVPSSPLQPLPPSPRVGS 242
P E P+ E L P P SP P P RL P P PLP + +
Sbjct: 428 PQLEAPLNEEMPLLPPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSR 487
Query: 243 P---GPHAHPP--LPKRPP 256
P P + PP P PP
Sbjct: 488 PLEESPLSPPPEESPLSPP 506
Score = 28.9 bits (63), Expect = 4.9
Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 194 PIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGS-PGPHAHPPLP 252
P+PE L+ SP P P E P SPL+ P SP S P P PL
Sbjct: 478 PLPEALHLSRPLEESPLSPPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLS 537
Query: 253 KRPPCKARRRLFQE 266
P F+E
Sbjct: 538 PPPEASPLSPPFEE 551
Score = 28.9 bits (63), Expect = 4.9
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 192 EGPIPEPCALAP-NPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPP 250
E P+ P P +P E + P EPVP L P P SP VG P P
Sbjct: 970 ESPLAAPILETPISPPPEANCTDP---------EPVPPMILPPSPGSP-VGPASPILMEP 1019
Query: 251 LPKRPPC 257
LP P C
Sbjct: 1020 LP--PQC 1024
Score = 28.5 bits (62), Expect = 6.4
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 191 REGPIPEPCALAPNPSSEGHSPGPFFDP------EFRLLEPVPSSPLQPLPPSPRVGSPG 244
R P+P L+P P SP P P RL P SP P PP SP
Sbjct: 652 RLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSP-PPEDSPASPP 710
Query: 245 P 245
P
Sbjct: 711 P 711
Score = 28.1 bits (61), Expect = 8.3
Identities = 32/114 (28%), Positives = 41/114 (35%), Gaps = 16/114 (14%)
Query: 153 EEAYEEDADPEFPELQMDSAAGSAAGLYSSARSMFSPYREGPIPEP------CALAPNPS 206
E A E +P L + S +G S + + P P+P P A P S
Sbjct: 897 EPALSEPGEPPLSPLPEELPL-SPSGEPSLSPQLMPP---DPLPPPLSPIITAAAPPALS 952
Query: 207 SEGHSPGPF-----FDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPPLPKRP 255
G PF DPE L P+ +P+ P PP P P LP P
Sbjct: 953 PLGELEYPFGAKGDSDPESPLAAPILETPISP-PPEANCTDPEPVPPMILPPSP 1005
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 17/139 (12%)
Query: 134 DVVVEQEVFCASVPEIAAQEEAYEEDADPEFPEL---------QMDSAAGSAAGLYSSAR 184
D++ Q+ C + AQ+E+ ED+ ++ Q D+A +AA SS
Sbjct: 2281 DLITHQKKQCYKDEDDDAQDESQTEDSMDATDQVVYKHCTVSGQTDAAKNAAAPAASSGS 2340
Query: 185 SMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPL---PPSPRVG 241
+P P PEP +P P P DP P+ PL PP
Sbjct: 2341 GTSTPLIPSPKPEPEKTSPKPEYPAEKPKQ-SDPSPPSQGTKPALPLASTSSDPPQASTA 2399
Query: 242 SPGPHAHPP----LPKRPP 256
P P PP L RPP
Sbjct: 2400 QPQPQPQPPKQPQLIGRPP 2418
Score = 37.0 bits (84), Expect = 0.018
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHA 247
SP P P P L P P S GP P S+PLQ PP+P P P
Sbjct: 1954 SPETPPPPPPPPPLPPAPPQPS-SMGPVKIPN------TVSTPLQAPPPTPPPPPPPPPP 2006
Query: 248 HPPLPKRPPCKA 259
PP P PP A
Sbjct: 2007 PPPPPPPPPPSA 2018
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 40.8 bits (94), Expect = 0.001
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 171 SAAGSAAGLYSSARSMFSPYREGPIPEPCALAPNPSSEGHSPG--PFFDPEFRLLEPVPS 228
+AA +A + A + + P R GP P AP P G PG P P + P
Sbjct: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG-IPPGRG 210
Query: 229 SPLQPLPPSPRVGSPGPHAHPPLPKRPP 256
+P+ PP R PG PP RPP
Sbjct: 211 TPMGMPPPGMRPPPPGMRGPPPPGMRPP 238
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 40.8 bits (94), Expect = 0.001
Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 170 DSAAGSAAGLYSS---ARSMFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPV 226
D++A S AG S AR +P +EG P P P S + P P L P
Sbjct: 167 DTSAHSKAGSSSPEPWARPSCTP-QEGGCPRPKERESPPPS---ALQPVQLPRLALSPPP 222
Query: 227 PSSPLQPLPPSPRVGSPGPHAHPPLPKRPP 256
P+ PL P PP +V +P P + PP P+ PP
Sbjct: 223 PAPPLPPPPPLAQV-APSPPSPPPPPRPPP 251
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.8 bits (94), Expect = 0.001
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 145 SVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLYSSARSM-FSPYREGPIPEPCALAP 203
SV + +E A + P L M S++ A + + + SP +G P A P
Sbjct: 889 SVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPP 948
Query: 204 NPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPPLPKRPP 256
+P +P P + P P PS P PSP+ P A PP PK P
Sbjct: 949 SPKGGPATPSPKWAPTPPAATP-PSPKGGPATPSPKGAPTPPAATPPSPKGGP 1000
Score = 34.3 bits (77), Expect = 0.12
Identities = 33/121 (27%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 141 VFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAA--GLYSSARSMFSPYREGPIPEP 198
V +S E+ A + + P L + A A L A ++ SP + IP P
Sbjct: 1508 VIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTP 1567
Query: 199 CALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQP---LPPSPRVGSPGPHAHPPLPKRP 255
PSS+ S P P P P L P PSP+ P PP P++
Sbjct: 1568 KEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKG 1627
Query: 256 P 256
P
Sbjct: 1628 P 1628
Score = 32.3 bits (72), Expect = 0.44
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 196 PEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVG-SPGPHAHPPLPKR 254
P P A+ P PS +G P P + PSS P PP+ GP PP PKR
Sbjct: 1333 PTPPAVTP-PSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKR 1391
Query: 255 PP 256
P
Sbjct: 1392 GP 1393
Score = 32.0 bits (71), Expect = 0.58
Identities = 20/69 (28%), Positives = 26/69 (37%)
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHA 247
+P +G P A P+P +P P P + P P P+ S P A
Sbjct: 979 TPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAA 1038
Query: 248 HPPLPKRPP 256
PP PK P
Sbjct: 1039 TPPSPKGSP 1047
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHA 247
+P +G P A P+P +P P P P PS PSP+ P A
Sbjct: 1188 TPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAA 1246
Query: 248 HPPLPKRPP 256
PP PK P
Sbjct: 1247 TPPSPKGGP 1255
Score = 29.3 bits (64), Expect = 3.7
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 5 PRSPSAFPAPWWGQQP---------GGPG-PAKRLRLEEPAG--PEPRVAPSLEDPAGTP 52
P+ A P+P W P GGP P+ + PA P P+ P+ P G P
Sbjct: 950 PKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAP 1009
Query: 53 AVGALT 58
A+T
Sbjct: 1010 TPPAVT 1015
Score = 29.3 bits (64), Expect = 3.7
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHA 247
+P +G P A P+P +P P P PS P PSP+ P A
Sbjct: 1050 TPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATP-PSPKGGPATPSPKGAPMPPAA 1108
Query: 248 HPPLPK 253
PP PK
Sbjct: 1109 TPPSPK 1114
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 26/126 (20%)
Query: 147 PEIAAQEEAYE---EDADPEFP-----ELQMDSAAGSAAGLYSSARSMFSPYRE------ 192
P A++E A+ ED + E E +M A + S S+ SP+ E
Sbjct: 687 PAAASEEAAFPPVVEDEEMEASGVSGNEEEMVEEAEATVNNSSDTESIPSPHTEAAKDTG 746
Query: 193 --GPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPP 250
GP P P L ++G PGP P E +P+ P +P P S G+P P PP
Sbjct: 747 QNGPKP-PATLG----ADGPPPGPPTPPP----EDIPA-PTEPTPASEATGAPTPPPAPP 796
Query: 251 LPKRPP 256
P PP
Sbjct: 797 SPSAPP 802
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 39.7 bits (91), Expect = 0.003
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 24/206 (11%)
Query: 73 LDDVDLVLELPPTSILRV-SLDGHTLI-LIPEVLLSSVDERSGAQDDSSAGLEVDVFLGA 130
++D V L +S L V SL+G L+ + L S D +++ S ++ + L +
Sbjct: 934 VEDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLE-KISIALPS 992
Query: 131 LREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPE-LQMDSAAGSAAGLYSSARSMFSP 189
++ ++ A+ ++ + Y + + P+ LQ S++G SS R+ SP
Sbjct: 993 STSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRT--SP 1050
Query: 190 YR-----EGPIPEPCALAPNPS-SEGHSPGP--------FFDPEFRLLEPVPSSPLQPL- 234
+ EGP+P +L PS + +PGP P L + P+ PL+P
Sbjct: 1051 CQSPTISEGPVP---SLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKR 1107
Query: 235 PPSPRVGSPGPHAHPPLPKRPPCKAR 260
PP PR +P PP PP AR
Sbjct: 1108 PPPPRPVAPPTRPAPPQRPPPPSGAR 1133
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 39.7 bits (91), Expect = 0.003
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 24/206 (11%)
Query: 73 LDDVDLVLELPPTSILRV-SLDGHTLI-LIPEVLLSSVDERSGAQDDSSAGLEVDVFLGA 130
++D V L +S L V SL+G L+ + L S D +++ S ++ + L +
Sbjct: 973 VEDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLE-KISIALPS 1031
Query: 131 LREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPE-LQMDSAAGSAAGLYSSARSMFSP 189
++ ++ A+ ++ + Y + + P+ LQ S++G SS R+ SP
Sbjct: 1032 STSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRT--SP 1089
Query: 190 YR-----EGPIPEPCALAPNPS-SEGHSPGP--------FFDPEFRLLEPVPSSPLQPL- 234
+ EGP+P +L PS + +PGP P L + P+ PL+P
Sbjct: 1090 CQSPTISEGPVP---SLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKR 1146
Query: 235 PPSPRVGSPGPHAHPPLPKRPPCKAR 260
PP PR +P PP PP AR
Sbjct: 1147 PPPPRPVAPPTRPAPPQRPPPPSGAR 1172
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 39.7 bits (91), Expect = 0.003
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 24/206 (11%)
Query: 73 LDDVDLVLELPPTSILRV-SLDGHTLI-LIPEVLLSSVDERSGAQDDSSAGLEVDVFLGA 130
++D V L +S L V SL+G L+ + L S D +++ S ++ + L +
Sbjct: 973 VEDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLE-KISIALPS 1031
Query: 131 LREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPE-LQMDSAAGSAAGLYSSARSMFSP 189
++ ++ A+ ++ + Y + + P+ LQ S++G SS R+ SP
Sbjct: 1032 STSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRT--SP 1089
Query: 190 YR-----EGPIPEPCALAPNPS-SEGHSPGP--------FFDPEFRLLEPVPSSPLQPL- 234
+ EGP+P +L PS + +PGP P L + P+ PL+P
Sbjct: 1090 CQSPTISEGPVP---SLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKR 1146
Query: 235 PPSPRVGSPGPHAHPPLPKRPPCKAR 260
PP PR +P PP PP AR
Sbjct: 1147 PPPPRPVAPPTRPAPPQRPPPPSGAR 1172
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 39.7 bits (91), Expect = 0.003
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFD--PEFRLLEPVPSSPLQPLPPSPRVGSPGP 245
+P +E PIP+P L P+ +E +P D P P+P +PL P P P +P P
Sbjct: 1813 APGQESPIPDP-KLMPHMKNEPTTPSWLADIPPWVPKDRPLPPAPLSPAPGPP---TPAP 1868
Query: 246 HAHPPLP 252
+H P P
Sbjct: 1869 ESHTPAP 1875
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 39.3 bits (90), Expect = 0.004
Identities = 43/133 (32%), Positives = 57/133 (42%), Gaps = 24/133 (18%)
Query: 136 VVEQEVFCASVPEIAAQEEAYEEDADPEFP---ELQMDSAAGSAAGLYSS-ARSMFSPYR 191
VVE E AS ++ EE E+A+ E+ +G A SS S+ SP+
Sbjct: 699 VVEDEEMEAS--GVSGNEEEMVEEAEALHASGNEVPRGECSGPATVNNSSDTESIPSPHT 756
Query: 192 E--------GPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSP 243
E GP P P L ++G PGP P E +P+ P +P P S G+P
Sbjct: 757 EAAKDTGQNGPKP-PATLG----ADGPPPGPPTPPP----EDIPA-PTEPTPASEATGAP 806
Query: 244 GPHAHPPLPKRPP 256
P PP P PP
Sbjct: 807 TPPPAPPSPSAPP 819
>gi|169172682 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.005
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 44 SLEDPAGTPAVGALTSIVVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEV 103
SLE P G ++VL G +R+ L++V +L L P ++L+++L+ L+++PE
Sbjct: 64 SLELPQNQQDSGTEELMIVLEQGTEVRLSLEEV--ILILAPETVLQLTLENTVLVIVPEH 121
Query: 104 LLSSVD 109
+L S D
Sbjct: 122 VLRSED 127
>gi|169172911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.005
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 44 SLEDPAGTPAVGALTSIVVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEV 103
SLE P G ++VL G +R+ L++V +L L P ++L+++L+ L+++PE
Sbjct: 64 SLELPQNQQDSGTEELMIVLEQGTEVRLSLEEV--ILILAPETVLQLTLENTVLVIVPEH 121
Query: 104 LLSSVD 109
+L S D
Sbjct: 122 VLRSED 127
>gi|169172807 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 38.9 bits (89), Expect = 0.005
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 44 SLEDPAGTPAVGALTSIVVLAAGCALRVPLDDVDLVLELPPTSILRVSLDGHTLILIPEV 103
SLE P G ++VL G +R+ L++V +L L P ++L+++L+ L+++PE
Sbjct: 64 SLELPQNQQDSGTEELMIVLEQGTEVRLSLEEV--ILILAPETVLQLTLENTVLVIVPEH 121
Query: 104 LLSSVD 109
+L S D
Sbjct: 122 VLRSED 127
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 38.5 bits (88), Expect = 0.006
Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQ------PLPPSPRVG 241
+P P P P P+P S P P EP P+ PL P PP P G
Sbjct: 537 APGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPG 596
Query: 242 SPGPHAHPPLPKRPP 256
+ GP PP P PP
Sbjct: 597 TDGPVPPPPPPPPPP 611
Score = 34.7 bits (78), Expect = 0.089
Identities = 42/158 (26%), Positives = 59/158 (37%), Gaps = 19/158 (12%)
Query: 114 AQDDSSAGL-EVDVFLGALREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPE----LQ 168
A+++S A + E++ L R+++ +E F S A++ E A P P L+
Sbjct: 418 AENESMAKIAELEKQLSQARKELETLRERFSESTAMGASRRPPEPEKAPPAAPTRPSALE 477
Query: 169 MDSAAGSAAGLYSSARSMFSPYREGPIPEPCAL-----APNPSSEGHSPGPFFDPEFRLL 223
+ GL R +P A AP P SP P P
Sbjct: 478 LKVEELEEKGLIRILRGPGDAVSIEILPVAVATPSGGDAPTPGVPTGSPSPDLAPA---A 534
Query: 224 EPVPSSPLQPLPPSPRVGSP------GPHAHPPLPKRP 255
EP P + P PP P + SP P PPLP P
Sbjct: 535 EPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSP 572
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 38.1 bits (87), Expect = 0.008
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 176 AAGLYSSARSMFSPYREGPIPE-----PCALAPNPSSEG-HSPGPFFDPEFRLLEPVP-- 227
A G++ A + P G P+ P A A +P + G H P P P+ + P P
Sbjct: 354 APGVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPG 413
Query: 228 ---SSP-LQPLPPSPRVGSPGPHAHPPLPK--RPP 256
S+P + P PP +PG H P+P RPP
Sbjct: 414 VHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPP 448
Score = 36.6 bits (83), Expect = 0.023
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 194 PIPEPCALAPNPSSEG-HSPGPFFDPEFRLLEPVPSSPLQPL-----PPSPRVGSPGPHA 247
P+ P A +P + G H P P P + P P+S + P PP+P V P P
Sbjct: 292 PVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHP-PTSGVHPPAPGVHPPAPGVHPPAPGV 350
Query: 248 HPPLP 252
HPP P
Sbjct: 351 HPPAP 355
Score = 34.3 bits (77), Expect = 0.12
Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 12/64 (18%)
Query: 189 PYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAH 248
P GP P P L P P+ H P P P P+S + P P+P V P P H
Sbjct: 269 PAPSGP-PGPPQLPP-PAPGVHPPAPVVHP--------PASGVHP--PAPGVHPPAPGVH 316
Query: 249 PPLP 252
PP P
Sbjct: 317 PPAP 320
Score = 33.5 bits (75), Expect = 0.20
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 176 AAGLYSSARSMFSP----YREGPIPEPCALAPNPSSEG-HSPGPFFDPEFRLLEPVPSSP 230
A G++ A + P + P P A +P + G H P P P + P PS+
Sbjct: 312 APGVHPPAPGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAG 371
Query: 231 LQPL-----PPSPRVGSPGPHAHPPLPKRPP 256
+ P P +P V P HPP P P
Sbjct: 372 VHPQAPGVHPAAPAVHPQAPGVHPPAPGMHP 402
Score = 32.3 bits (72), Expect = 0.44
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 194 PIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPL---PPSPRVGSPGPHAHPP 250
P+PE +L P P PG P P PS P P PP+P V P P HPP
Sbjct: 246 PLPE--SLPPPP------PGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPP 297
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 37.7 bits (86), Expect = 0.010
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 192 EGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQ----PLPPSPR------VG 241
EGP P P + +P+PS +P P P+ L SSPLQ L PR G
Sbjct: 944 EGP-PTPASHSPSPSLPALAPSPPHRPDSPLFNSRCSSPLQLNLLQLEELPRAEGAAVAG 1002
Query: 242 SPGPHAHPPLPKRPPCKARRRL 263
PG A PP P + RL
Sbjct: 1003 GPGSSAGPPPPSAEAAEPEARL 1024
Score = 32.7 bits (73), Expect = 0.34
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 8/75 (10%)
Query: 186 MFSPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRL-----LEPVPSSPLQPLPPSPRV 240
+FSP R GP P P A P P P P L L P PSS +P
Sbjct: 888 VFSP-RGGPQPLPPA--PTSVPPAAFPAPLVTPMVALVLPNYLFPTPSSYPYGALQTPAE 944
Query: 241 GSPGPHAHPPLPKRP 255
G P P +H P P P
Sbjct: 945 GPPTPASHSPSPSLP 959
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 37.7 bits (86), Expect = 0.010
Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 73 LDDVDLVLELPPTSILRV-SLDGHTLI-LIPEVLLSSVDERSGAQDDSSAGLEVDVFLGA 130
++D V L +S L V SL+G L+ + L S D +++ S ++ + L +
Sbjct: 929 VEDKMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPDWIKNLEEEMSLE-KISIALPS 987
Query: 131 LREDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPE-LQMDSAAGSAAGLYSSARSMFSP 189
++ ++ A+ ++ + Y + + P+ LQ S++G SS R+ SP
Sbjct: 988 STSSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRT--SP 1045
Query: 190 YR-----EGPIPEPCALAPNPS-SEGHSPGP--------FFDPEFRLLEPVPSSPLQP-L 234
+ EGP+P +L PS + +PGP P L + P+ PL+P
Sbjct: 1046 CQSPTISEGPVP---SLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQKDPAQPLEPKR 1102
Query: 235 PPSPRVGSPGPHAHPPLPKRPP 256
PP PR P P P+RPP
Sbjct: 1103 PPPPR--PVAPPTRPAPPQRPP 1122
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 37.4 bits (85), Expect = 0.014
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 19/135 (14%)
Query: 133 EDVVVEQEVFCASVPEIAAQEEAYEEDADPEF-----PELQMDSAAGSAAGLYSSARSMF 187
ED ++ +V PE + + + P+ P + S A YS +R
Sbjct: 1818 EDPPLDTDVLVPGAPERHSPIQNLDPPLRPDSGSAPPPAPRSFSGARIKVPNYSPSRRPL 1877
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPS------SPLQPLPPSPRVG 241
GP+P P +PSS H DP+F P P SPL P PP R
Sbjct: 1878 GGVSFGPLPSP----GSPSSLTHHIPTVGDPDF----PAPPRRSRRPSPLAPRPPPSRWA 1929
Query: 242 SPGPHAHPPLPKRPP 256
SP P L PP
Sbjct: 1930 SPPLKTSPQLRVPPP 1944
Score = 33.1 bits (74), Expect = 0.26
Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 152 QEEAYEEDADPEFPELQMDSAAGSAAGLYSSARSMFSPYREGPIPEPCALAPNPSSEGHS 211
+E+ EE+ D E E + + A + +A E +P P P PS
Sbjct: 366 EEKKEEEEKDKEGEEKEERAVAEE---MMPAAEK-----EEAKLPPPPLTPPAPS----P 413
Query: 212 PGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPPLPKRPPCKAR 260
P P L P +SP PL P P P P + PPLP PP A+
Sbjct: 414 PPP--------LPPPSTSPPPPLCPPP----PPPVSPPPLPSPPPPPAQ 450
Score = 32.0 bits (71), Expect = 0.58
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 188 SPYREGPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPP-SPRVGSPGPH 246
+P R P P A P P S SP P+ R+ P P+S + L P S + PGP
Sbjct: 1908 APPRRSRRPSPLAPRP-PPSRWASPPLKTSPQLRV--PPPTSVVTALTPTSGELAPPGPA 1964
Query: 247 AHPPLPK 253
PP P+
Sbjct: 1965 PSPPPPE 1971
Score = 28.9 bits (63), Expect = 4.9
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 16/76 (21%)
Query: 189 PYREGPIPEPCALAPNPSSEGHSPGPFFDPEFR---LLEPVP--SSPLQPLPPSPRVGSP 243
P P+P P AP P S +P P PE R L EP +S + LPP P P
Sbjct: 574 PQEPAPVPSP-PRAPTPPS---TPVPL--PEKRRSILREPTFRWTSLTRELPPPPPAPPP 627
Query: 244 GPHAHPPLPKRPPCKA 259
PP P PP A
Sbjct: 628 -----PPAPSPPPAPA 638
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 37.4 bits (85), Expect = 0.014
Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 25/164 (15%)
Query: 105 LSSVDERSGAQDDSSAGLEVDVFLGALREDVVVEQEVFCASV-----------PEIAAQE 153
++S D+ S DDS L + L + + V E++ C + EI +
Sbjct: 558 VTSPDDMSTKSDDSFQSLHGSLPLDSFSKFVAGERD--CPRLLLSALAQEDLASEILGLQ 615
Query: 154 EAYEEDADP---EFPELQMDSAA------GSAAGLYSSARSMFS-PYREGPIPEPCALAP 203
EA E AD E P L DS+ +A L S A+S + P +P+ L
Sbjct: 616 EAIGEKADKAWAEAPSLVKDSSKPPFSLENHSACLDSVAKSAWPRPGEPEALPDSLQLDK 675
Query: 204 NPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLP--PSPRVGSPGP 245
+++ SPG F DP P P PL P +G P P
Sbjct: 676 GGNAKDFSPGLFEDPSVAFATPDPKKTTGPLSFGTKPTLGVPAP 719
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 37.4 bits (85), Expect = 0.014
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 189 PYREGP--------IPEPCALAPNPSSEGHSPGPFFDPEFRLL---EPVPSSPLQP--LP 235
P+ GP +P P AL P S H P P +L+ +P+PSSP QP L
Sbjct: 395 PHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 454
Query: 236 PSPRVGSPGPHAHPP 250
S + P P +HPP
Sbjct: 455 QSQNL-PPPPASHPP 468
Score = 28.9 bits (63), Expect = 4.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 225 PVPSSPLQPLPPSPRVGSPGPHAHPPLPKRPP 256
P P PLQPL S S HA PPL + P
Sbjct: 266 PSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 297
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 37.4 bits (85), Expect = 0.014
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 189 PYREGP--------IPEPCALAPNPSSEGHSPGPFFDPEFRLL---EPVPSSPLQP--LP 235
P+ GP +P P AL P S H P P +L+ +P+PSSP QP L
Sbjct: 949 PHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 1008
Query: 236 PSPRVGSPGPHAHPP 250
S + P P +HPP
Sbjct: 1009 QSQNL-PPPPASHPP 1022
Score = 28.9 bits (63), Expect = 4.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 225 PVPSSPLQPLPPSPRVGSPGPHAHPPLPKRPP 256
P P PLQPL S S HA PPL + P
Sbjct: 820 PSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 851
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 37.4 bits (85), Expect = 0.014
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 189 PYREGP--------IPEPCALAPNPSSEGHSPGPFFDPEFRLL---EPVPSSPLQP--LP 235
P+ GP +P P AL P S H P P +L+ +P+PSSP QP L
Sbjct: 949 PHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLT 1008
Query: 236 PSPRVGSPGPHAHPP 250
S + P P +HPP
Sbjct: 1009 QSQNL-PPPPASHPP 1022
Score = 28.9 bits (63), Expect = 4.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 225 PVPSSPLQPLPPSPRVGSPGPHAHPPLPKRPP 256
P P PLQPL S S HA PPL + P
Sbjct: 820 PSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 851
>gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo
sapiens]
Length = 1198
Score = 37.0 bits (84), Expect = 0.018
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 188 SPYREGPIP--EPCALAPNPSSEGHSPGPFFDPEFRL---LEPVPSSPLQPLPPSPRVGS 242
SP + P P EP + + +SEG PGP P + EP P+ L P P
Sbjct: 728 SPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAGQE 787
Query: 243 PGPHAHPPLPKRPP 256
P PH P L K P
Sbjct: 788 PLPHQDPLLTKDLP 801
>gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo
sapiens]
Length = 519
Score = 37.0 bits (84), Expect = 0.018
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 188 SPYREGPIP--EPCALAPNPSSEGHSPGPFFDPEFRL---LEPVPSSPLQPLPPSPRVGS 242
SP + P P EP + + +SEG PGP P + EP P+ L P P
Sbjct: 49 SPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAGQE 108
Query: 243 PGPHAHPPLPKRPP 256
P PH P L K P
Sbjct: 109 PLPHQDPLLTKDLP 122
>gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo
sapiens]
Length = 917
Score = 37.0 bits (84), Expect = 0.018
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 188 SPYREGPIP--EPCALAPNPSSEGHSPGPFFDPEFRL---LEPVPSSPLQPLPPSPRVGS 242
SP + P P EP + + +SEG PGP P + EP P+ L P P
Sbjct: 447 SPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPPSKDVPPCQEPPPAQDLSPCQDLPAGQE 506
Query: 243 PGPHAHPPLPKRPP 256
P PH P L K P
Sbjct: 507 PLPHQDPLLTKDLP 520
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,722,855
Number of Sequences: 37866
Number of extensions: 1045199
Number of successful extensions: 8963
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 571
Number of HSP's that attempted gapping in prelim test: 6241
Number of HSP's gapped (non-prelim): 2703
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.