Guide to the Human Genome
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Name: LOC100133251 Sequence: fasta or formatted (237aa) NCBI GI: 169172911
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         11           2
 C cysteine            0.0          0           0
 D aspartate           3.8          9           2
 E glutamate          10.1         24           2
 F phenylalanine       2.1          5           1
 G glycine             5.1         12           1
 H histidine           1.7          4           1
 I isoleucine          5.9         14           2
 K lysine              1.7          4           2
 L leucine            11.4         27           1
 M methionine          2.5          6           1
 N asparagine          3.8          9           1
 P proline             8.9         21           2
 Q glutamine           9.7         23           3
 R arginine            4.6         11           2
 S serine              8.9         21           2
 T threonine           6.3         15           2
 V valine              6.3         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131608          1.000   PREDICTED: hypothetical protein 
LOC100131608          0.832   PREDICTED: hypothetical protein 
FLJ46210              0.043   hypothetical protein LOC389152 
LOC729627             0.032   hypothetical protein LOC729627 
LOC389151             0.032   hypothetical protein LOC389151 
PTPN20A               0.023   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.023   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.023   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.023   protein tyrosine phosphatase, non-receptor type 20 i...
ARHGAP21              0.020   Rho GTPase activating protein 21 
MBIP                  0.020   MAP3K12 binding inhibitory protein 1 isoform 2 [Hom...
MBIP                  0.020   MAP3K12 binding inhibitory protein 1 isoform 1 [Hom...
PHAX                  0.018   RNA U, small nuclear RNA export adaptor (phosphoryla...
LOC645971             0.018   PREDICTED: similar to hCG2036794 
LOC645971             0.018   PREDICTED: similar to hCG2036794 
MAGEC1                0.016   melanoma antigen family C, 1 
LOC645971             0.016   PREDICTED: similar to hCG2036794 
BRCA1                 0.014   breast cancer 1, early onset isoform 2 
BRCA1                 0.014   breast cancer 1, early onset isoform 5 
BRCA1                 0.014   breast cancer 1, early onset isoform 4 
BRCA1                 0.014   breast cancer 1, early onset isoform 3 
BRCA1                 0.014   breast cancer 1, early onset isoform 1 
HRASLS5               0.014   HRAS-like suppressor family, member 5 isoform 3 [Ho...
HRASLS5               0.014   HRAS-like suppressor family, member 5 isoform 1 [Hom...
POLR2E                0.014   DNA directed RNA polymerase II polypeptide E 
SOHLH1                0.011   spermatogenesis and oogenesis specific basic helix-...
SOHLH1                0.011   spermatogenesis and oogenesis specific basic helix-...
HRASLS5               0.011   HRAS-like suppressor family, member 5 isoform 2 [Ho...
MYBL2                 0.011   MYB-related protein B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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