Guide to the Human Genome
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Name: AMBN Sequence: fasta or formatted (447aa) NCBI GI: 7706067
Description:

ameloblastin precursor

Referenced in:

Bone and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         37           3
 C cysteine            0.2          1           1
 D aspartate           4.7         21           2
 E glutamate           6.0         27           2
 F phenylalanine       4.5         20           2
 G glycine             8.5         38           2
 H histidine           2.5         11           1
 I isoleucine          2.0          9           1
 K lysine              3.4         15           1
 L leucine            11.0         49           2
 M methionine          5.6         25           2
 N asparagine          2.9         13           1
 P proline            14.5         65           3
 Q glutamine           6.5         29           3
 R arginine            2.5         11           1
 S serine              7.4         33           2
 T threonine           4.5         20           2
 V valine              2.5         11           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ameloblastin precursor 
MED15                 0.033   mediator complex subunit 15 isoform b 
AMELX                 0.030   amelogenin (X chromosome) isoform 1 precursor 
PRB2                  0.029   proline-rich protein BstNI subfamily 2 
MLL2                  0.028   myeloid/lymphoid or mixed-lineage leukemia 2 
INF2                  0.027   inverted formin 2 isoform 2 
INF2                  0.027   inverted formin 2 isoform 1 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 1 pre...
COL4A3                0.026   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.026   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.026   alpha 3 type IV collagen isoform 1 precursor 
SETD1B                0.024   SET domain containing 1B 
COL4A3                0.024   alpha 3 type IV collagen isoform 5 precursor 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
AMELX                 0.021   amelogenin (X chromosome) isoform 3 precursor 
NACA                  0.021   nascent polypeptide-associated complex alpha subuni...
LOC100293055          0.020   PREDICTED: similar to COL22A1 protein 
COL4A5                0.020   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.020   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.020   type IV collagen alpha 5 isoform 3 precursor 
MED15                 0.020   mediator complex subunit 15 isoform a 
BCL9L                 0.020   B-cell CLL/lymphoma 9-like 
WDR33                 0.020   WD repeat domain 33 isoform 1 
TENC1                 0.019   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.019   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.019   tensin like C1 domain containing phosphatase isoform...
RAPH1                 0.019   Ras association and pleckstrin homology domains 1 is...
PTPN23                0.019   protein tyrosine phosphatase, non-receptor type 23 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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