Guide to the Human Genome
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Name: C7orf50 Sequence: fasta or formatted (194aa) NCBI GI: 197304708
Description:

hypothetical protein LOC84310

Not currently referenced in the text

Other entries for this name:
alt mRNA {194aa} hypothetical protein LOC84310
alt mRNA {194aa} hypothetical protein LOC84310
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         19           2
 C cysteine            0.5          1           1
 D aspartate           3.6          7           1
 E glutamate          11.9         23           2
 F phenylalanine       1.0          2           1
 G glycine             6.7         13           1
 H histidine           2.1          4           1
 I isoleucine          0.5          1           1
 K lysine             10.3         20           2
 L leucine            13.9         27           3
 M methionine          1.5          3           1
 N asparagine          1.0          2           1
 P proline             6.7         13           2
 Q glutamine           6.2         12           1
 R arginine            9.8         19           2
 S serine              4.6          9           1
 T threonine           2.6          5           1
 V valine              4.1          8           1
 W tryptophan          1.5          3           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84310 
C7orf50               1.000   hypothetical protein LOC84310 
C7orf50               1.000   hypothetical protein LOC84310 
CHAF1A                0.030   chromatin assembly factor 1, subunit A (p150) 
NIN                   0.025   ninein isoform 4 
NIN                   0.025   ninein isoform 5 
NIN                   0.025   ninein isoform 1 
NIN                   0.025   ninein isoform 2 
ANKZF1                0.025   ankyrin repeat and zinc finger domain containing 1 ...
ANKZF1                0.025   ankyrin repeat and zinc finger domain containing 1 ...
INCENP                0.025   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.025   inner centromere protein antigens 135/155kDa isofor...
EIF5B                 0.025   eukaryotic translation initiation factor 5B 
ZFP91                 0.025   zinc finger protein 91 
UBXN1                 0.022   UBX domain protein 1 
HMGXB4                0.022   high-mobility group protein 2-like 1 
TERF1                 0.022   telomeric repeat binding factor 1 isoform 1 
TERF1                 0.022   telomeric repeat binding factor 1 isoform 2 
BSN                   0.022   bassoon protein 
OLIG1                 0.022   oligodendrocyte transcription factor 1 
PPIG                  0.022   peptidylprolyl isomerase G 
C21orf70              0.022   hypothetical protein LOC85395 
MAP1B                 0.019   microtubule-associated protein 1B 
FAM50B                0.019   family with sequence similarity 50, member B 
C16orf88              0.019   hypothetical protein LOC400506 
TCHH                  0.019   trichohyalin 
MLLT6                 0.019   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MINK1                 0.019   misshapen/NIK-related kinase isoform 4 
MINK1                 0.019   misshapen/NIK-related kinase isoform 2 
MINK1                 0.019   misshapen/NIK-related kinase isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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