Guide to the Human Genome
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Name: C16orf88 Sequence: fasta or formatted (458aa) NCBI GI: 111607441
Description:

hypothetical protein LOC400506

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         32           2
 C cysteine            0.7          3           1
 D aspartate           5.7         26           2
 E glutamate           9.0         41           3
 F phenylalanine       2.6         12           1
 G glycine             6.3         29           2
 H histidine           2.2         10           1
 I isoleucine          2.2         10           1
 K lysine             17.5         80           8
 L leucine             5.9         27           1
 M methionine          2.0          9           1
 N asparagine          2.4         11           2
 P proline             6.3         29           1
 Q glutamine           3.7         17           2
 R arginine            5.9         27           2
 S serine              8.3         38           2
 T threonine           4.6         21           2
 V valine              5.5         25           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400506 
NEFH                  0.050   neurofilament, heavy polypeptide 200kDa 
EIF5B                 0.040   eukaryotic translation initiation factor 5B 
TRDN                  0.040   triadin 
ABCF1                 0.034   ATP-binding cassette, sub-family F, member 1 isoform...
ABCF1                 0.032   ATP-binding cassette, sub-family F, member 1 isoform...
SFRS11                0.032   splicing factor, arginine/serine-rich 11 
LOC100133599          0.031   PREDICTED: hypothetical protein 
ANKRD11               0.030   ankyrin repeat domain 11 
CD3EAP                0.029   CD3E antigen, epsilon polypeptide associated protein ...
NEFM                  0.028   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.028   neurofilament, medium polypeptide 150kDa isoform 2 ...
CALD1                 0.028   caldesmon 1 isoform 1 
CYLC2                 0.027   cylicin 2 
RSRC2                 0.026   arginine/serine-rich coiled-coil 2 isoform a 
PINX1                 0.025   PIN2-interacting protein 1 
CHD7                  0.025   chromodomain helicase DNA binding protein 7 
LOC100294088          0.025   PREDICTED: hypothetical protein, partial 
TCHH                  0.025   trichohyalin 
GTF2F1                0.025   general transcription factor IIF, polypeptide 1, 74...
MAP1B                 0.023   microtubule-associated protein 1B 
FAM133A               0.023   hypothetical protein LOC286499 
WDR87                 0.022   NYD-SP11 protein 
LOC100133599          0.022   PREDICTED: hypothetical protein 
TTF1                  0.022   transcription termination factor, RNA polymerase I [...
BASP1                 0.021   brain abundant, membrane attached signal protein 1 [...
NOP56                 0.021   nucleolar protein 5A 
IWS1                  0.021   IWS1 homolog 
CYLC1                 0.021   cylicin, basic protein of sperm head cytoskeleton 1...
PRUNE2                0.021   prune homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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