Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HELB Sequence: fasta or formatted (1087aa) NCBI GI: 32455236
Description:

helicase (DNA) B

Referenced in:

Replication Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         52           2
 C cysteine            2.8         30           3
 D aspartate           6.4         70           3
 E glutamate           7.5         81           2
 F phenylalanine       4.4         48           2
 G glycine             4.5         49           2
 H histidine           2.4         26           2
 I isoleucine          4.9         53           2
 K lysine              6.4         70           2
 L leucine             9.7        105           2
 M methionine          1.7         18           2
 N asparagine          5.2         56           2
 P proline             4.7         51           2
 Q glutamine           4.9         53           2
 R arginine            5.1         55           2
 S serine              8.6         94           3
 T threonine           6.2         67           2
 V valine              6.5         71           2
 W tryptophan          1.5         16           2
 Y tyrosine            2.0         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   helicase (DNA) B 
DHX30                 0.005   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 2 ...
DHX30                 0.005   DEAH (Asp-Glu-Ala-His) box polypeptide 30 isoform 1 ...
PCDHGB4               0.005   protocadherin gamma subfamily B, 4 isoform 2 precurs...
PCDHGB4               0.005   protocadherin gamma subfamily B, 4 isoform 1 precurs...
DHX9                  0.005   DEAH (Asp-Glu-Ala-His) box polypeptide 9 
LOC100287942          0.005   PREDICTED: hypothetical protein 
LOC100287942          0.005   PREDICTED: hypothetical protein XP_002343005 
MAPK7                 0.005   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.005   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.005   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.005   mitogen-activated protein kinase 7 isoform 2 
DHX36                 0.005   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.005   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
SERPINF2              0.004   alpha-2-plasmin inhibitor 
CTTNBP2NL             0.004   CTTNBP2 N-terminal like 
DHX37                 0.004   DEAH (Asp-Glu-Ala-His) box polypeptide 37 
SEC31B                0.004   SEC31 homolog B 
NLRC3                 0.004   NOD3 protein 
LOC100291988          0.003   PREDICTED: hypothetical protein XP_002344510 
SCML4                 0.003   sex comb on midleg-like 4 
CHD9                  0.003   chromodomain helicase DNA binding protein 9 
APC                   0.003   adenomatous polyposis coli 
APC                   0.003   adenomatous polyposis coli 
APC                   0.003   adenomatous polyposis coli 
SH2D3C                0.003   SH2 domain containing 3C isoform e 
SH2D3C                0.003   SH2 domain containing 3C isoform d 
SH2D3C                0.003   SH2 domain containing 3C isoform b 
SH2D3C                0.003   SH2 domain containing 3C isoform a 
CAMK2B                0.003   calcium/calmodulin-dependent protein kinase II beta ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press