Search of human proteins with 197116396

Search of human proteins with 197116396

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|197116396 hypothetical protein LOC284677 [Homo sapiens]
         (235 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|197116396 hypothetical protein LOC284677 [Homo sapiens]            493   e-140
gi|61966777 V-set and immunoglobulin domain containing 8 [Homo s...   191   5e-49
gi|109134327 PTD016 protein [Homo sapiens]                             37   0.011
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap...    34   0.095
gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo sa...    34   0.095
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap...    34   0.095
gi|78482617 general transcription factor IIIC, polypeptide 2, be...    33   0.28 
gi|4504205 general transcription factor IIIC, polypeptide 2, bet...    33   0.28 
gi|116235485 delta-notch-like EGF repeat-containing transmembran...    33   0.28 
gi|149944516 tet oncogene family member 3 [Homo sapiens]               32   0.62 
gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]           32   0.62 
gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]          32   0.62 
gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]          32   0.62 
gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo ...    31   1.1  
gi|7662236 TSC22 domain family, member 2 [Homo sapiens]                31   1.1  
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [...    30   1.4  
gi|13994190 frizzled 8 [Homo sapiens]                                  30   1.4  
gi|123701942 hypothetical protein LOC199990 isoform 2 [Homo sapi...    30   1.8  
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]                      30   1.8  
gi|194272140 dendrin [Homo sapiens]                                    30   2.3  
gi|15721939 metastatic lymph node 51 [Homo sapiens]                    30   2.3  
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap...    29   3.1  
gi|38373671 SEC24-related protein C [Homo sapiens]                     29   3.1  
gi|38373669 SEC24-related protein C [Homo sapiens]                     29   3.1  
gi|154759249 keratin associated protein 10-11 [Homo sapiens]           29   3.1  
gi|63053515 keratin associated protein 10-3 [Homo sapiens]             29   3.1  
gi|28195386 sex-determining region Y-box 2 [Homo sapiens]              29   4.0  
gi|134244285 Notch homolog 3 [Homo sapiens]                            29   4.0  
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]            29   4.0  
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    29   4.0  

>gi|197116396 hypothetical protein LOC284677 [Homo sapiens]
          Length = 235

 Score =  493 bits (1269), Expect = e-140
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MGMLAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPP 60
           MGMLAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPP
Sbjct: 1   MGMLAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPP 60

Query: 61  PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC 120
           PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC
Sbjct: 61  PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC 120

Query: 121 AHSCAHPGLPPHLVHKLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQ 180
           AHSCAHPGLPPHLVHKLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQ
Sbjct: 121 AHSCAHPGLPPHLVHKLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQ 180

Query: 181 VSAWMRALPSPDCPGLRTTGEQMQKLLLKENKVKTRKSKRRSGEGSHLTTSILEQ 235
           VSAWMRALPSPDCPGLRTTGEQMQKLLLKENKVKTRKSKRRSGEGSHLTTSILEQ
Sbjct: 181 VSAWMRALPSPDCPGLRTTGEQMQKLLLKENKVKTRKSKRRSGEGSHLTTSILEQ 235


>gi|61966777 V-set and immunoglobulin domain containing 8 [Homo
           sapiens]
          Length = 414

 Score =  191 bits (485), Expect = 5e-49
 Identities = 90/91 (98%), Positives = 91/91 (100%)

Query: 21  QEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE 80
           +EDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE
Sbjct: 324 REDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE 383

Query: 81  AGPSPVYVKVKSAEPADCAEGPVQCKNGLLV 111
           AGPSPVYVKVKSAEPADCAEGPVQCKNGLLV
Sbjct: 384 AGPSPVYVKVKSAEPADCAEGPVQCKNGLLV 414


>gi|109134327 PTD016 protein [Homo sapiens]
          Length = 435

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 50/205 (24%), Positives = 77/205 (37%), Gaps = 23/205 (11%)

Query: 20  GQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAAC 79
           G E    P  K SG   +    +       +RS  + ++PP  G  ED +   C      
Sbjct: 16  GHERRQRPEAKTSGSEKKYLRAM-----QANRS--QLHSPPGTGSSEDASTPQCVHTRLT 68

Query: 80  EAGPSP----VYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVH 135
             G  P    V++++ S  P +CAE      +  + S  H    CAH C H  L  H   
Sbjct: 69  GEGSCPHSGDVHIQINSI-PKECAEN---ASSRNIRSGVHS---CAHGCVHSRLRGHSHS 121

Query: 136 KLPLSYLQTQDTDAASRRINAPLAAGWSWLRLWLVTLASGVDFPQVSAWMRALPSPDCP- 194
           +  L    T DT A S    +   + + +L  WL      +    V   M+ +       
Sbjct: 122 EARL----TDDTAAESGDHGSSSFSEFRYLFKWLQKSLPYILILSVKLVMQHITGISLGI 177

Query: 195 GLRTTGEQMQKLLLKENKVKTRKSK 219
           GL TT     K ++ +  ++ R SK
Sbjct: 178 GLLTTFMYANKSIVNQVFLRERSSK 202


>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sapiens]
          Length = 3667

 Score = 34.3 bits (77), Expect = 0.095
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 112  SSPHCEEPCAHSCAHPGLPPH 132
            SSPHC EP   SC +PG+P H
Sbjct: 3300 SSPHCIEPTQTSCENPGVPRH 3320


>gi|205277354 CUB and Sushi multiple domains 3 isoform 3 [Homo
            sapiens]
          Length = 3538

 Score = 34.3 bits (77), Expect = 0.095
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 112  SSPHCEEPCAHSCAHPGLPPH 132
            SSPHC EP   SC +PG+P H
Sbjct: 3171 SSPHCIEPTQTSCENPGVPRH 3191


>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sapiens]
          Length = 3707

 Score = 34.3 bits (77), Expect = 0.095
 Identities = 13/21 (61%), Positives = 15/21 (71%)

Query: 112  SSPHCEEPCAHSCAHPGLPPH 132
            SSPHC EP   SC +PG+P H
Sbjct: 3340 SSPHCIEPTQTSCENPGVPRH 3360


>gi|78482617 general transcription factor IIIC, polypeptide 2, beta
           110kDa [Homo sapiens]
          Length = 911

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)

Query: 6   PGPLQGRRPRKGHKGQEDAVAPGC------------------KASGRGSRVTHLLGYPTQ 47
           PG  +G R RKG K  +    P                    K  GR S+   LL     
Sbjct: 99  PGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLL----L 154

Query: 48  NVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKN 107
            +S+ L R  +  P   PED             A  + +Y++  + E +     PV C  
Sbjct: 155 KLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPVSCPE 214

Query: 108 GLLVSSPHCEEPCAHSCAHPG 128
           G  VSSP   +      A PG
Sbjct: 215 GPKVSSPTKPKKIRQPAACPG 235


>gi|4504205 general transcription factor IIIC, polypeptide 2, beta
           110kDa [Homo sapiens]
          Length = 911

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 36/141 (25%), Positives = 49/141 (34%), Gaps = 22/141 (15%)

Query: 6   PGPLQGRRPRKGHKGQEDAVAPGC------------------KASGRGSRVTHLLGYPTQ 47
           PG  +G R RKG K  +    P                    K  GR S+   LL     
Sbjct: 99  PGRKRGGRTRKGPKRPQQPNPPSAPLVPGLLDQSNPLSTPMPKKRGRKSKAELLL----L 154

Query: 48  NVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKN 107
            +S+ L R  +  P   PED             A  + +Y++  + E +     PV C  
Sbjct: 155 KLSKDLDRPESQSPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPVSCPE 214

Query: 108 GLLVSSPHCEEPCAHSCAHPG 128
           G  VSSP   +      A PG
Sbjct: 215 GPKVSSPTKPKKIRQPAACPG 235


>gi|116235485 delta-notch-like EGF repeat-containing transmembrane
           [Homo sapiens]
          Length = 737

 Score = 32.7 bits (73), Expect = 0.28
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 24  AVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGP 83
           A APG +     + +  LLG   +    SL       P   P   A  PC     C + P
Sbjct: 6   AQAPGAQLLPALALLLLLLGAGPRG--SSLANPVPAAPLSAPGPCAAQPCRNGGVCTSRP 63

Query: 84  SPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCE---EPCAHSCAHPG 128
            P         PA   E    C     +S  +C+   +PCA +  H G
Sbjct: 64  EP-----DPQHPAPAGEPGYSCTCPAGISGANCQLVADPCASNPCHHG 106


>gi|149944516 tet oncogene family member 3 [Homo sapiens]
          Length = 1660

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 31/85 (36%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 80  EAGPSPVYVKVK--SAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKL 137
           EA P+   VKV+  S+ PA  A  PV  +     SS    EP  H  A   L  HL HK 
Sbjct: 347 EALPTKPKVKVEAPSSSPAP-APSPVLQREAPTPSS----EPDTHQKAQTALQQHLHHKR 401

Query: 138 PLSYLQTQDTDAASRRINAPLAAGW 162
            L   Q  DT   +   + P A GW
Sbjct: 402 SLFLEQVHDTSFPAP--SEPSAPGW 424


>gi|33457350 OTU domain containing 5 isoform a [Homo sapiens]
          Length = 571

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 11  GRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVAL 70
           G RPR     Q     P       G+     L  P   V+    ++ +PPPCGGP     
Sbjct: 58  GARPRASPPPQGPLPGPP------GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGG 111

Query: 71  APCTA--AAACEAGPSPVYVKVKSA-EPADCAEGPVQCK 106
            P  A  AAA   G + V V V  A     C  GP   K
Sbjct: 112 GPGDALGAAAAGVGAAGVVVGVGGAVGVGGCCSGPGHSK 150


>gi|209977021 OTU domain containing 5 isoform b [Homo sapiens]
          Length = 566

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 11  GRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVAL 70
           G RPR     Q     P       G+     L  P   V+    ++ +PPPCGGP     
Sbjct: 58  GARPRASPPPQGPLPGPP------GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGG 111

Query: 71  APCTA--AAACEAGPSPVYVKVKSA-EPADCAEGPVQCK 106
            P  A  AAA   G + V V V  A     C  GP   K
Sbjct: 112 GPGDALGAAAAGVGAAGVVVGVGGAVGVGGCCSGPGHSK 150


>gi|209977019 OTU domain containing 5 isoform b [Homo sapiens]
          Length = 566

 Score = 31.6 bits (70), Expect = 0.62
 Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 11  GRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVAL 70
           G RPR     Q     P       G+     L  P   V+    ++ +PPPCGGP     
Sbjct: 58  GARPRASPPPQGPLPGPP------GALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGG 111

Query: 71  APCTA--AAACEAGPSPVYVKVKSA-EPADCAEGPVQCK 106
            P  A  AAA   G + V V V  A     C  GP   K
Sbjct: 112 GPGDALGAAAAGVGAAGVVVGVGGAVGVGGCCSGPGHSK 150


>gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo
           sapiens]
          Length = 474

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 61  PCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPC 120
           PCG P   A+   T  AA  A  S   V      P D   G V  +  +L +      PC
Sbjct: 404 PCGHPCQSAVCRATVRAAVRASVSECCV------PGDSQGGRVGIRVRVLCAGQRSGRPC 457

Query: 121 AHSC 124
            H C
Sbjct: 458 GHPC 461


>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
          Length = 780

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 18/97 (18%)

Query: 59  PPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEG----------------P 102
           PPP GG    + AP         GP P+    + ++P     G                 
Sbjct: 278 PPPVGGAVAQSSAPLPPFPGAATGPQPMMAAAQPSQPQGAGPGGQTLPPTNVTLAQPAMS 337

Query: 103 VQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKLPL 139
           +  + G  V +P  ++P   +   P +PP   H LP+
Sbjct: 338 LPPQPGPAVGAPAAQQPQQFAYPQPQIPPG--HLLPV 372


>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
          [Homo sapiens]
          Length = 3969

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 22/58 (37%), Positives = 22/58 (37%)

Query: 27 PGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPS 84
          PG    G G     L G P Q V   L     P   GGP      P  AAAA  AG S
Sbjct: 13 PGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSPPAVAAAAAAAGSS 70


>gi|13994190 frizzled 8 [Homo sapiens]
          Length = 694

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 16/102 (15%)

Query: 6   PGPLQGRRPRKGH-KGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG 64
           P P  G +P  G   G+     P  +  GRG         P +      +   A PP GG
Sbjct: 168 PPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGGGK---ARPPGGG 224

Query: 65  PEDVALAPCTAAAACEAGP-------SPVYVKVKSAEPADCA 99
                 APC     C A          P+Y +VK+ + A+CA
Sbjct: 225 A-----APCEPGCQCRAPMVSVSSERHPLYNRVKTGQIANCA 261


>gi|123701942 hypothetical protein LOC199990 isoform 2 [Homo
           sapiens]
          Length = 180

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 18/57 (31%), Positives = 25/57 (43%)

Query: 27  PGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGP 83
           P     GR  R+ H  G   ++ +RSL ++ AP PC  P          AAA  + P
Sbjct: 92  PDLWGPGRSYRLLHGAGGHLESPARSLPQRPAPDPCRAPRVEQQPSVEGAAALRSCP 148


>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
          Length = 904

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 21  QEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACE 80
           Q  AV PG   SGRG   + +L   +++ S+   R +        E+       A A   
Sbjct: 422 QTSAVPPGTSLSGRGPTPSLVL---SKDSSKEQARNFLKQALSALEE-------AGAPAP 471

Query: 81  AGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKLPLS 140
             PSP    V S++P   A         L  SSP             GLP  +    PLS
Sbjct: 472 GRPSPATAAVPSSQPKTEAPQASPLAKPLQSSSPRV----------LGLPSRMEPPAPLS 521

Query: 141 YLQTQDTDA 149
              T    A
Sbjct: 522 TSSTSQASA 530


>gi|194272140 dendrin [Homo sapiens]
          Length = 711

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 14/96 (14%)

Query: 6   PGPLQGR--------RPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKY 57
           P P Q R        +P  G  G+ +   PG   S    R   +LG P   V+     + 
Sbjct: 507 PSPCQKRLSSSRLLHQPGGGRGGEAEGGRPG--DSTLEERTFRILGLPAPEVNL----RD 560

Query: 58  APPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSA 93
           AP   G PE  AL P  + A   A  S V V  + A
Sbjct: 561 APTQPGSPEHQALGPAASGAQGRAEGSEVAVVQRRA 596


>gi|15721939 metastatic lymph node 51 [Homo sapiens]
          Length = 703

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 15  RKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAP----PPCGGPEDVAL 70
           ++G  G     A G      G  V H + Y ++ + ++  R  +P    P  G PE    
Sbjct: 320 KEGRAGFRPVEAGGQHGGRSGETVKHEISYRSRRLEQTSVRDPSPEADAPVLGSPEKEEA 379

Query: 71  APCTAAAACEAGPSP 85
           A    AAA +A P P
Sbjct: 380 ASEPPAAAPDAAPPP 394


>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
           sapiens]
          Length = 254

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 45/165 (27%), Positives = 54/165 (32%), Gaps = 35/165 (21%)

Query: 4   LAPGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCG 63
           L P P   R P  G      AV   C A+   S  +     P      ++RR  A     
Sbjct: 57  LVPAPAAVRPPVAGPPATAPAVV--CPAAAGPSAASLRAANPLAVAPAAVRRPAATLGAA 114

Query: 64  GPEDVALAPCTAAAA-------CEAGP-------------SPVYVKVKSAEPA-----DC 98
            P  VA A    AAA       C A P             +P+ V   +A PA       
Sbjct: 115 SPAAVAPAAVCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVNPAAAAPAAACVQSV 174

Query: 99  AEGP-VQCKNGLLVSSPHCEEPCAHSCAHPGLPPHLVHKLPLSYL 142
           AE P         VSSP    PCA       +PP       L+YL
Sbjct: 175 AESPATPLAIAQPVSSPAAPAPCA-------VPPLAAEPTALAYL 212


>gi|38373671 SEC24-related protein C [Homo sapiens]
          Length = 1094

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 6  PGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG- 64
          P P+     +  + GQ  + AP          V      P Q +SR      APP  G  
Sbjct: 16 PQPIYPGYHQSSYGGQSGSTAPAIPYGAYNGPVPGYQQTPPQGMSR------APPSSGAP 69

Query: 65 PEDVALAPCTAAAACEAGPSPV 86
          P   A APC  AA  + G   V
Sbjct: 70 PASTAQAPCGQAAYGQFGQGDV 91


>gi|38373669 SEC24-related protein C [Homo sapiens]
          Length = 1094

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 6  PGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG- 64
          P P+     +  + GQ  + AP          V      P Q +SR      APP  G  
Sbjct: 16 PQPIYPGYHQSSYGGQSGSTAPAIPYGAYNGPVPGYQQTPPQGMSR------APPSSGAP 69

Query: 65 PEDVALAPCTAAAACEAGPSPV 86
          P   A APC  AA  + G   V
Sbjct: 70 PASTAQAPCGQAAYGQFGQGDV 91


>gi|154759249 keratin associated protein 10-11 [Homo sapiens]
          Length = 298

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 16/64 (25%)

Query: 65  PEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSC 124
           PE     PC+A + C   PS   V         C   PV C     VSSP C+  C  S 
Sbjct: 23  PESCCEPPCSAPSCCAPAPSLSLV---------CT--PVSC-----VSSPCCQAACEPSA 66

Query: 125 AHPG 128
              G
Sbjct: 67  CQSG 70


>gi|63053515 keratin associated protein 10-3 [Homo sapiens]
          Length = 221

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 65  PEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQCKNGLLVSSPHCEEPCAHSC 124
           PE     PC A + C   P    V      P  C   P  C       SP C+  C  SC
Sbjct: 23  PESCCEPPCCATSCCAPAPCLTLV----CTPVSCVSSP--CCQAACEPSP-CQSGCTSSC 75



 Score = 28.5 bits (62), Expect = 5.2
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 20/85 (23%)

Query: 58  APPPC----GGPEDVALAPCTAAAACEAGP---------SPVYVKVKSAEPADCAEGPVQ 104
           AP PC      P     +PC   AACE  P         +P   +  S +PA C   P  
Sbjct: 38  APAPCLTLVCTPVSCVSSPC-CQAACEPSPCQSGCTSSCTPSCCQQSSCQPACCTSSP-- 94

Query: 105 CKNGLLVSSPHCEEP--CAHSCAHP 127
           C+    V  P C +P  C   C  P
Sbjct: 95  CQQACCV--PVCCKPVCCVPVCCKP 117


>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
          Length = 317

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)

Query: 36  SRVTHLLGYPTQNVSRSLRRKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYVKVKSAEP 95
           S  T++ G PT ++S S +         G   +AL    +    EA  SP  V   S   
Sbjct: 212 SSQTYMNGSPTYSMSYSQQ---------GTPGMALGSMGSVVKSEASSSPPVVTSSSHSR 262

Query: 96  ADCAEGPVQCKNGLLVSSPHCEEPCAHSCAH 126
           A C  G ++    + +      EP A S  H
Sbjct: 263 APCQAGDLRDMISMYLPGAEVPEPAAPSRLH 293


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 15/91 (16%)

Query: 55  RKYAPPPCGGPEDVALAPCTAAAACEAGPSPVYV---------KVKSAEPADCAEGPVQC 105
           R +  P C  P+    +PC   A C  GP   ++         +   ++  +C  G    
Sbjct: 110 RGFRGPDCSLPDPCLSSPCAHGARCSVGPDGRFLCSCPPGYQGRSCRSDVDECRVGEPCR 169

Query: 106 KNGLLVSSP---HCEEPCAHS---CAHPGLP 130
             G  +++P    C+ P  ++   C +P +P
Sbjct: 170 HGGTCLNTPGSFRCQCPAGYTGPLCENPAVP 200


>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 6    PGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRV-THLLGYPTQNVSRSLR----RKYAPP 60
            PG L+G R  +  K +  A  PG     R  R   H    PT    R  R    R  AP 
Sbjct: 1211 PGALRGNRSDRSRKRKAIASTPGALLGNRSDRSRKHKAIAPTPGAPRIDRSPACRAIAPT 1270

Query: 61   P--CGGPEDVALAPCTAAAACEAGPS 84
            P   G     A+AP       ++ P+
Sbjct: 1271 PGALGDDSSTAIAPTPGTPRGDSSPA 1296


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 27/100 (27%), Positives = 36/100 (36%), Gaps = 2/100 (2%)

Query: 5   APGPLQGRRPRKGHKGQEDAVAPGCKASGRGSRVTHLLGYPTQNVSRSLRRKYAPPPCGG 64
           AP P    RP            PG   SG G+  + +   P+Q+ S S  R  AP P  G
Sbjct: 72  APHPDSRTRPAARPPHPRTRSPPG--RSGSGTTFSAVPPRPSQHQSGSRLRPAAPGPRPG 129

Query: 65  PEDVALAPCTAAAACEAGPSPVYVKVKSAEPADCAEGPVQ 104
                 +P  AA    A  +P       + P    +G  Q
Sbjct: 130 CSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,881,560
Number of Sequences: 37866
Number of extensions: 643133
Number of successful extensions: 2320
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 2256
Number of HSP's gapped (non-prelim): 111
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.