Guide to the Human Genome
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Search of human proteins with 196259805

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|196259805 zinc finger, CCHC domain containing 9 [Homo
sapiens]
         (271 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]     568   e-162
gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]     568   e-162
gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]      568   e-162
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]            57   2e-08
gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]              57   2e-08
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]            55   6e-08
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]            55   8e-08
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]            55   8e-08
gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]            55   8e-08
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]      52   7e-07
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]       43   3e-04
gi|13375938 lin-28 homolog [Homo sapiens]                              37   0.018
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ...    36   0.041
gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens]      35   0.069
gi|194294523 intersectin 2 isoform 3 [Homo sapiens]                    35   0.091
gi|194294521 intersectin 2 isoform 1 [Homo sapiens]                    35   0.091
gi|194294525 intersectin 2 isoform 2 [Homo sapiens]                    35   0.091
gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo s...    33   0.20 
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho...    33   0.20 
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho...    33   0.20 
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho...    33   0.26 
gi|51972214 lin-28 homolog B [Homo sapiens]                            33   0.34 
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]      33   0.34 
gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo...    32   0.45 
gi|224458301 family with sequence similarity 186, member A [Homo...    32   0.77 
gi|93277122 RNA binding motif protein 4 [Homo sapiens]                 32   0.77 
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]      32   0.77 
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa...    32   0.77 
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi...    32   0.77 
gi|88759339 aster-associated protein [Homo sapiens]                    32   0.77 

>gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]
          Length = 271

 Score =  568 bits (1465), Expect = e-162
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
           MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK
Sbjct: 1   MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60

Query: 61  NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
           NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR
Sbjct: 61  NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120

Query: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
           QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE
Sbjct: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180

Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
           FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR
Sbjct: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240

Query: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
           WAKGMSADYEEILDVPKPQKPKTKIPKVVNF
Sbjct: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271


>gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]
          Length = 271

 Score =  568 bits (1465), Expect = e-162
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
           MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK
Sbjct: 1   MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60

Query: 61  NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
           NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR
Sbjct: 61  NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120

Query: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
           QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE
Sbjct: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180

Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
           FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR
Sbjct: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240

Query: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
           WAKGMSADYEEILDVPKPQKPKTKIPKVVNF
Sbjct: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271


>gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]
          Length = 271

 Score =  568 bits (1465), Expect = e-162
 Identities = 271/271 (100%), Positives = 271/271 (100%)

Query: 1   MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
           MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK
Sbjct: 1   MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60

Query: 61  NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
           NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR
Sbjct: 61  NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120

Query: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
           QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE
Sbjct: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180

Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
           FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR
Sbjct: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240

Query: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
           WAKGMSADYEEILDVPKPQKPKTKIPKVVNF
Sbjct: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271


>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
          Length = 170

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
           +C+ C + GH   DC       D+    CY CG   H    CK   +P         C+ 
Sbjct: 46  ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 93

Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
           CG+ GHL+R C       +AD   C  CG   H++KDC
Sbjct: 94  CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 125



 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
           ++  ++    C++C KPGH   DC  A E +      CY CG   H I K   KV     
Sbjct: 81  KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 128

Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
                KC+ CGE GH++ +C    +        C  CG   HL ++C
Sbjct: 129 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 164



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 19/89 (21%)

Query: 152 MGTGICYRCGSTEHEITKCKAKVDPALGE------FPFAK------CFVCGEMGHLSRSC 199
           M +  C++CG + H   +C        G       F F        C+ CGE GHL++ C
Sbjct: 1   MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60

Query: 200 PDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
                 L  D   C  CG   H+ KDC E
Sbjct: 61  -----DLQED--ACYNCGRGGHIAKDCKE 82


>gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]
          Length = 177

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
           +C+ C + GH   DC       D+    CY CG   H    CK   +P         C+ 
Sbjct: 53  ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 100

Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
           CG+ GHL+R C       +AD   C  CG   H++KDC
Sbjct: 101 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 132



 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
           ++  ++    C++C KPGH   DC  A E +      CY CG   H I K   KV     
Sbjct: 88  KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 135

Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
                KC+ CGE GH++ +C    +        C  CG   HL ++C
Sbjct: 136 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 171



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
           CF C + GH   +CP     +  G     R G T     +  +   P +       C+ C
Sbjct: 6   CFKCGRSGHWARECPTG-GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-------CYRC 57

Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
           GE GHL++ C      L  D   C  CG   H+ KDC E
Sbjct: 58  GESGHLAKDC-----DLQED--ACYNCGRGGHIAKDCKE 89


>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
          Length = 171

 Score = 55.1 bits (131), Expect = 6e-08
 Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 36/127 (28%)

Query: 130 CFHCRKPGHGIADCPAA------LENQDMG--------TGICYRCGSTEHEITKCKAKVD 175
           CF C + GH   +CP        + ++  G          ICYRCG + H    C  + D
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65

Query: 176 PALGEF----PFAK------------CFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSV 219
            A          AK            C+ CG+ GHL+R C       +AD   C  CG  
Sbjct: 66  EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD------HADEQKCYSCGEF 119

Query: 220 EHLKKDC 226
            H++KDC
Sbjct: 120 GHIQKDC 126



 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
           ++  ++    C++C KPGH   DC  A E +      CY CG   H I K   KV     
Sbjct: 82  KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 129

Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
                KC+ CGE GH++ +C    +        C  CG   HL ++C
Sbjct: 130 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 165



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 18/89 (20%)

Query: 152 MGTGICYRCGSTEHEITKCKAKVDPALGE------FPFAK------CFVCGEMGHLSRSC 199
           M +  C++CG + H   +C        G       F F        C+ CGE GHL++ C
Sbjct: 1   MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60

Query: 200 PDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
                    +   C  CG   H+ KDC E
Sbjct: 61  D------LQEDEACYNCGRGGHIAKDCKE 83



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 15/70 (21%)

Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG-----------CKLCGSVEHLKKDCPESQ 230
           +CF CG  GH +R CP      +G+ + G G           C  CG   HL KDC + Q
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-DLQ 63

Query: 231 NSERMVTVGR 240
             E     GR
Sbjct: 64  EDEACYNCGR 73


>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
          Length = 172

 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
           ++  ++    C++C KPGH   DC  A E +      CY CG   H I K   KV     
Sbjct: 83  KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 130

Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
                KC+ CGE GH++ +C    +        C  CG   HL ++C
Sbjct: 131 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 166



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 16/98 (16%)

Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
           +C+ C + GH   DC    + +      CY CG   H    CK   +P         C+ 
Sbjct: 46  ICYRCGESGHLAKDCDLQEDVE-----ACYNCGRGGHIAKDCK---EPKREREQC--CYN 95

Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
           CG+ GHL+R C       +AD   C  CG   H++KDC
Sbjct: 96  CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 127



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 17/89 (19%)

Query: 152 MGTGICYRCGSTEHEITKCKAKVDPALGE------FPFAK------CFVCGEMGHLSRSC 199
           M +  C++CG + H   +C        G       F F        C+ CGE GHL++ C
Sbjct: 1   MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60

Query: 200 PDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
                 L  D   C  CG   H+ KDC E
Sbjct: 61  D-----LQEDVEACYNCGRGGHIAKDCKE 84



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 14/70 (20%)

Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG-----------CKLCGSVEHLKKDCPESQ 230
           +CF CG  GH +R CP      +G+ + G G           C  CG   HL KDC   +
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQE 64

Query: 231 NSERMVTVGR 240
           + E     GR
Sbjct: 65  DVEACYNCGR 74


>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
          Length = 178

 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
           ++  ++    C++C KPGH   DC  A E +      CY CG   H I K   KV     
Sbjct: 89  KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 136

Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
                KC+ CGE GH++ +C    +        C  CG   HL ++C
Sbjct: 137 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 172



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 17/98 (17%)

Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
           +C+ C + GH   DC    +        CY CG   H    CK   +P         C+ 
Sbjct: 53  ICYRCGESGHLAKDCDLQEDE------ACYNCGRGGHIAKDCK---EPKREREQC--CYN 101

Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
           CG+ GHL+R C       +AD   C  CG   H++KDC
Sbjct: 102 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 133



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
           CF C + GH   +CP     +  G     R G T     +  +   P +       C+ C
Sbjct: 6   CFKCGRSGHWARECPTG-GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-------CYRC 57

Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
           GE GHL++ C         +   C  CG   H+ KDC E
Sbjct: 58  GESGHLAKDCD------LQEDEACYNCGRGGHIAKDCKE 90



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 22/77 (28%)

Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG------------------CKLCGSVEHLK 223
           +CF CG  GH +R CP      +G+ + G G                  C  CG   HL 
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64

Query: 224 KDCPESQNSERMVTVGR 240
           KDC + Q  E     GR
Sbjct: 65  KDC-DLQEDEACYNCGR 80


>gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]
          Length = 179

 Score = 54.7 bits (130), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)

Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
           ++  ++    C++C KPGH   DC  A E +      CY CG   H I K   KV     
Sbjct: 90  KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 137

Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
                KC+ CGE GH++ +C    +        C  CG   HL ++C
Sbjct: 138 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 173



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 16/98 (16%)

Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
           +C+ C + GH   DC    + +      CY CG   H    CK   +P         C+ 
Sbjct: 53  ICYRCGESGHLAKDCDLQEDVE-----ACYNCGRGGHIAKDCK---EPKREREQC--CYN 102

Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
           CG+ GHL+R C       +AD   C  CG   H++KDC
Sbjct: 103 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 134



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
           CF C + GH   +CP     +  G     R G T     +  +   P +       C+ C
Sbjct: 6   CFKCGRSGHWARECPTG-GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-------CYRC 57

Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
           GE GHL++ C      L  D   C  CG   H+ KDC E
Sbjct: 58  GESGHLAKDCD-----LQEDVEACYNCGRGGHIAKDCKE 91



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 21/77 (27%)

Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG------------------CKLCGSVEHLK 223
           +CF CG  GH +R CP      +G+ + G G                  C  CG   HL 
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64

Query: 224 KDCPESQNSERMVTVGR 240
           KDC   ++ E     GR
Sbjct: 65  KDCDLQEDVEACYNCGR 81


>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
          Length = 166

 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 18/99 (18%)

Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
           C+ C + G    +C   L N      ICY CG + H    CK   DP         C+ C
Sbjct: 47  CYCCGESGRNAKNC-VLLGN------ICYNCGRSGHIAKDCK---DPKRERRQH--CYTC 94

Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
           G +GHL+R C D  K        C  CG + H++KDC +
Sbjct: 95  GRLGHLARDC-DRQK-----EQKCYSCGKLGHIQKDCAQ 127



 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 24/104 (23%)

Query: 129 VCFHCRKPGHGIADC--PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKC 186
           +C++C + GH   DC  P     Q      CY CG   H    C  + +         KC
Sbjct: 66  ICYNCGRSGHIAKDCKDPKRERRQH-----CYTCGRLGHLARDCDRQKE--------QKC 112

Query: 187 FVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
           + CG++GH+ + C             C  CG + H+  +C +++
Sbjct: 113 YSCGKLGHIQKDCAQVK---------CYRCGEIGHVAINCSKAR 147



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)

Query: 131 FHCRKPGHGIADCPAALENQDMGTG--------------ICYRCGSTEHEITKCKAKVDP 176
           F C   GH    CP        G G               CY CG +      C      
Sbjct: 7   FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL---- 62

Query: 177 ALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMV 236
            LG      C+ CG  GH+++ C D  +        C  CG + HL +DC + Q  ++  
Sbjct: 63  -LGNI----CYNCGRSGHIAKDCKDPKRERRQH---CYTCGRLGHLARDC-DRQKEQKCY 113

Query: 237 TVGR 240
           + G+
Sbjct: 114 SCGK 117



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 28/91 (30%)

Query: 109 KDSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEIT 168
           KD +RE R+            C+ C + GH   DC    E +      CY CG   H I 
Sbjct: 81  KDPKRERRQH-----------CYTCGRLGHLARDCDRQKEQK------CYSCGKLGH-IQ 122

Query: 169 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
           K  A+V          KC+ CGE+GH++ +C
Sbjct: 123 KDCAQV----------KCYRCGEIGHVAINC 143


>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
          Length = 403

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)

Query: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLC 216
           C++CGS  H    C              +CF CGE GHLS  C    KG+      C LC
Sbjct: 335 CFKCGSRTHMSGSCTQD-----------RCFRCGEEGHLSPYC---RKGIV-----CNLC 375

Query: 217 GSVEHLKKDCPES 229
           G   H    CP++
Sbjct: 376 GKRGHAFAQCPKA 388



 Score = 29.3 bits (64), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 125 KNAMVCFHCRKPGHGIADCPAALEN 149
           +  +VC  C K GH  A CP A+ N
Sbjct: 367 RKGIVCNLCGKRGHAFAQCPKAVHN 391


>gi|13375938 lin-28 homolog [Homo sapiens]
          Length = 209

 Score = 37.0 bits (84), Expect = 0.018
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)

Query: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
           CY CG  +H   +CK    P        KC  C  + H+  SCP
Sbjct: 139 CYNCGGLDHHAKECKLPPQP-------KKCHFCQSISHMVASCP 175



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)

Query: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
           +C+ CG + H ++ C  P  PK        C  C S+ H+   CP
Sbjct: 138 RCYNCGGLDHHAKECKLPPQPKK-------CHFCQSISHMVASCP 175


>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
           sapiens]
          Length = 217

 Score = 35.8 bits (81), Expect = 0.041
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKG 205
           F  +KC+ CGE GHLS +CP N  G
Sbjct: 102 FDKSKCYECGESGHLSYACPKNMLG 126


>gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens]
          Length = 513

 Score = 35.0 bits (79), Expect = 0.069
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 18/93 (19%)

Query: 146 ALENQDMGTGICYRCGSTE----HEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPD 201
           +LENQ     +C  C S +    +    CK  V P+     +  C +C        SC +
Sbjct: 388 SLENQHCE--LCNSCTSKDGRKWNHCFLCKKCVKPS-----WIHCSICNHCAVPDHSC-E 439

Query: 202 NPKGLYADGGGCKLCGSVEHLKKDCPESQNSER 234
            PK       GC +CG ++H +  CP    S+R
Sbjct: 440 GPKH------GCFICGELDHKRSTCPNIATSKR 466



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 143 CPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPD 201
           C   ++   +   IC  C   +H              E P   CF+CGE+ H   +CP+
Sbjct: 414 CKKCVKPSWIHCSICNHCAVPDHSC------------EGPKHGCFICGELDHKRSTCPN 460


>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
          Length = 1670

 Score = 34.7 bits (78), Expect = 0.091
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 13  KRPLPATSWEDMKKGSFEGTSQNLPKRKQ--LEANRLSLKNDAPQAKHKKNKKKKEYLNE 70
           ++ LP T +ED +K ++E  +  L KR+Q  +E  +   +  A + K +  +K++E   +
Sbjct: 356 QKKLPVT-FEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQ 414

Query: 71  DVNGFMEY---LRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQ 121
           +    +E    L +  ++    +       E RE     L++  R E  R++RQ
Sbjct: 415 EWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQ 468


>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
          Length = 1697

 Score = 34.7 bits (78), Expect = 0.091
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 13  KRPLPATSWEDMKKGSFEGTSQNLPKRKQ--LEANRLSLKNDAPQAKHKKNKKKKEYLNE 70
           ++ LP T +ED +K ++E  +  L KR+Q  +E  +   +  A + K +  +K++E   +
Sbjct: 356 QKKLPVT-FEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQ 414

Query: 71  DVNGFMEY---LRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQ 121
           +    +E    L +  ++    +       E RE     L++  R E  R++RQ
Sbjct: 415 EWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQ 468


>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
          Length = 1249

 Score = 34.7 bits (78), Expect = 0.091
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)

Query: 13  KRPLPATSWEDMKKGSFEGTSQNLPKRKQ--LEANRLSLKNDAPQAKHKKNKKKKEYLNE 70
           ++ LP T +ED +K ++E  +  L KR+Q  +E  +   +  A + K +  +K++E   +
Sbjct: 356 QKKLPVT-FEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQ 414

Query: 71  DVNGFMEY---LRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQ 121
           +    +E    L +  ++    +       E RE     L++  R E  R++RQ
Sbjct: 415 EWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQ 468


>gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo
           sapiens]
          Length = 682

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 57  KHKKNKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGR 116
           K ++ +K KE+L      F  Y ++N  +    Q + T  ++V+E   V   K    +  
Sbjct: 23  KEQRRQKLKEHLLRRKTLFA-YKQENEMLSSRDQRVVTSEDQVQEGTKVLKLKTKMADKE 81

Query: 117 RLKRQA-AKKNAMVCFHC--RKPGHGIADCPAALE 148
            +KR A +K N +V  HC   KP + + +    ++
Sbjct: 82  NMKRPAESKNNTVVGKHCIPLKPSNELTNSTVVID 116


>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
            sapiens]
          Length = 1645

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)

Query: 126  NAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITK--------CKAKVDPA 177
            N   C  C K GH + DCP    +      + +R    + E  K         +  +DP 
Sbjct: 1291 NDRCCRVCGKIGHYMKDCPKRKSS------LLFRLKKKDSEEEKEGNEEEKDSRDVLDPR 1344

Query: 178  -------LGEFPFAKCFVCGEMGHLSRSCPD 201
                     +    +CF+CG+ GH+ R CP+
Sbjct: 1345 DLHDTRDFRDPRDLRCFICGDAGHVRRECPE 1375



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 213  CKLCGSVEHLKKDCPESQNS 232
            C++CG + H  KDCP+ ++S
Sbjct: 1295 CRVCGKIGHYMKDCPKRKSS 1314


>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
            sapiens]
          Length = 1640

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 14/85 (16%)

Query: 126  NAMVCFHCRKPGHGIADCPAA--LENQDMGTGICYRCGSTEHEITKCKAKVDPA------ 177
            N   C  C K GH + DCP    L+ +D       + G+ E + ++    +DP       
Sbjct: 1291 NDRCCRVCGKIGHYMKDCPKRKRLKKKDSEEE---KEGNEEEKDSR--DVLDPRDLHDTR 1345

Query: 178  -LGEFPFAKCFVCGEMGHLSRSCPD 201
               +    +CF+CG+ GH+ R CP+
Sbjct: 1346 DFRDPRDLRCFICGDAGHVRRECPE 1370



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 213  CKLCGSVEHLKKDCPESQNSER 234
            C++CG + H  KDCP+ +  ++
Sbjct: 1295 CRVCGKIGHYMKDCPKRKRLKK 1316


>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
            sapiens]
          Length = 1644

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 22/91 (24%)

Query: 126  NAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITK--------CKAKVDPA 177
            N   C  C K GH + DCP           + +R    + E  K         +  +DP 
Sbjct: 1291 NDRCCRVCGKIGHYMKDCPKR-------KSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPR 1343

Query: 178  -------LGEFPFAKCFVCGEMGHLSRSCPD 201
                     +    +CF+CG+ GH+ R CP+
Sbjct: 1344 DLHDTRDFRDPRDLRCFICGDAGHVRRECPE 1374



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 213  CKLCGSVEHLKKDCPESQN 231
            C++CG + H  KDCP+ ++
Sbjct: 1295 CRVCGKIGHYMKDCPKRKS 1313


>gi|51972214 lin-28 homolog B [Homo sapiens]
          Length = 250

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
           CY CG  +H   +C     P        KC  C  + H+  +CP
Sbjct: 129 CYNCGGLDHHAKECSLPPQP-------KKCHYCQSIMHMVANCP 165



 Score = 31.6 bits (70), Expect = 0.77
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
           +C+ CG + H ++ C  P  PK        C  C S+ H+  +CP
Sbjct: 128 RCYNCGGLDHHAKECSLPPQPK-------KCHYCQSIMHMVANCP 165


>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
          Length = 543

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 33/157 (21%), Positives = 50/157 (31%), Gaps = 48/157 (30%)

Query: 110 DSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITK 169
           ++R  GR  +R  +    ++C +C K GH   +CP   + +      C+ C    H +  
Sbjct: 223 NNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRR-----CFLCSRRGHLLYS 277

Query: 170 CKAKVDPALGEFPFAK---------------CFVCGEMGHLSRSC--------------- 199
           C A   P     P  K               C  C  +GH + +C               
Sbjct: 278 CPA---PLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGP 334

Query: 200 ------PDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
                 P  P  L      C  C    H   +CPE +
Sbjct: 335 PKKPKTPSRPSAL----AYCYHCAQKGHYGHECPERE 367


>gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo
           sapiens]
          Length = 834

 Score = 32.3 bits (72), Expect = 0.45
 Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 20/106 (18%)

Query: 114 EGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAK 173
           EG        K    VC      GH +A C       D G G+C+       ++   +  
Sbjct: 724 EGALRPPPGGKGEGTVCSRLPHHGHHVAACQTTGTTWDGGPGVCFL-----RQLLASELP 778

Query: 174 VDPALGEFPFA-KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGS 218
           + P L   P A  C VC              +GL    G CK C S
Sbjct: 779 MGPGLPRDPRAPPCLVC--------------RGLLPPAGPCKRCRS 810


>gi|224458301 family with sequence similarity 186, member A [Homo
           sapiens]
          Length = 2351

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 27/135 (20%), Positives = 64/135 (47%), Gaps = 17/135 (12%)

Query: 20  SWEDMKKGSFEGTSQNLPKRKQL--EANRLSLKNDAPQAKHKKNKKKKEYLNEDVNGFME 77
           +W  MK+G  E  SQ   + +++  E  + +    A Q + +K + ++E   E     ++
Sbjct: 866 AWLQMKEGKQEQQSQKQWQEEEMWKEEQKQATPKQAEQEEKQKQRGQEE--EELPKSSLQ 923

Query: 78  YLRQNSQ-MVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQAAKKNAMVCFHCRKP 136
            L + +Q M   G ++  ++ ++R+     ++K+++  G   +R+  K+        +KP
Sbjct: 924 RLEEGTQKMKTQGLLLEKENGQMRQ-----IQKEAKHLGPHRRREKGKEK-------QKP 971

Query: 137 GHGIADCPAALENQD 151
             G+ D    ++ +D
Sbjct: 972 ERGLEDLERQIKTKD 986


>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
          Length = 364

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 166 EITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYAD 209
           +++  + +  P +G+   + C+ CG+ GH S+ CP +  G  AD
Sbjct: 144 QLSTSRLRTAPGMGDQ--SGCYRCGKEGHWSKECPIDRSGRVAD 185


>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
          Length = 1844

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 54  PQAKHKKNKKKKEYLNEDVNGFMEYLRQNS----------QMVHNGQIIATDSEEVREEI 103
           P+   KK+ K+ E       GF   +R+ S          Q++   + +     +V EEI
Sbjct: 665 PKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNISKAKQLIEKAKALHISRSKVTEEI 724

Query: 104 AVALKKDSRRE 114
           A+ L++ SR +
Sbjct: 725 AIPLRRSSRHQ 735


>gi|84043963 eukaryotic translation initiation factor 5B [Homo
           sapiens]
          Length = 1220

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 50  KNDAPQ---AKHKKNKKKKEYLNEDVNGFMEYLRQNSQMVH-NGQIIATDSEEVREEIAV 105
           K   PQ    K KK KKK+++  +D+   +E L   +Q +  + + +A    E  EE   
Sbjct: 33  KEQEPQKSKGKKKKEKKKQDFDEDDILKELEELSLEAQGIKADRETVAVKPTENNEEEFT 92

Query: 106 ALKKDSRREGRRLKRQAAKKN 126
           +  KD +++G++ K+Q+   N
Sbjct: 93  S--KDKKKKGQKGKKQSFDDN 111


>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
           sapiens]
          Length = 783

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 37  PKRKQLEANRLSLKNDAPQAKHKKNKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIA--- 93
           PK KQ++      + D    K KK KKK+E    D++   + LR+  + +    + +   
Sbjct: 53  PKAKQVKKKAEPSEVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKVVSSKTK 112

Query: 94  --TDSEEVREEIAVALKKDSRREGRRLKRQAAKKN 126
             T +EE  EE   A K    ++ + +  +  +K+
Sbjct: 113 KVTKNEEPSEEEIDAPKPKKMKKEKEMNGETREKS 147


>gi|88759339 aster-associated protein [Homo sapiens]
          Length = 647

 Score = 31.6 bits (70), Expect = 0.77
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 39  RKQLEANRLSLKNDAPQAKHKKNKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEE 98
           +K+ E    + K +A QA  K  +KK EYL E      EY R   Q         T +E+
Sbjct: 498 KKKTEEENAARKGEALQAFEKWKEKKMEYLKEKNRKEREYERAKKQKEEE-----TVAEK 552

Query: 99  VREEIAVALKKDSRREGRRLKRQAAKKN 126
            ++ +    K + ++E    +++  K N
Sbjct: 553 KKDNLTAVEKWNEKKEAFFKQKEKEKIN 580


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,514,601
Number of Sequences: 37866
Number of extensions: 536746
Number of successful extensions: 2425
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 2097
Number of HSP's gapped (non-prelim): 294
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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