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Search of human proteins with 196259805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|196259805 zinc finger, CCHC domain containing 9 [Homo
sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens] 568 e-162
gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens] 568 e-162
gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens] 568 e-162
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens] 57 2e-08
gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens] 57 2e-08
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens] 55 6e-08
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens] 55 8e-08
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens] 55 8e-08
gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens] 55 8e-08
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens] 52 7e-07
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 43 3e-04
gi|13375938 lin-28 homolog [Homo sapiens] 37 0.018
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ... 36 0.041
gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens] 35 0.069
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 35 0.091
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 35 0.091
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 35 0.091
gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo s... 33 0.20
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 33 0.20
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 33 0.20
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 33 0.26
gi|51972214 lin-28 homolog B [Homo sapiens] 33 0.34
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 33 0.34
gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo... 32 0.45
gi|224458301 family with sequence similarity 186, member A [Homo... 32 0.77
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 32 0.77
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 32 0.77
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.77
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi... 32 0.77
gi|88759339 aster-associated protein [Homo sapiens] 32 0.77
>gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 568 bits (1465), Expect = e-162
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK
Sbjct: 1 MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
Query: 61 NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR
Sbjct: 61 NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
Query: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE
Sbjct: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR
Sbjct: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
Query: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
WAKGMSADYEEILDVPKPQKPKTKIPKVVNF
Sbjct: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
>gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 568 bits (1465), Expect = e-162
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK
Sbjct: 1 MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
Query: 61 NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR
Sbjct: 61 NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
Query: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE
Sbjct: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR
Sbjct: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
Query: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
WAKGMSADYEEILDVPKPQKPKTKIPKVVNF
Sbjct: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
>gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 568 bits (1465), Expect = e-162
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK
Sbjct: 1 MTRWARVSTTYNKRPLPATSWEDMKKGSFEGTSQNLPKRKQLEANRLSLKNDAPQAKHKK 60
Query: 61 NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR
Sbjct: 61 NKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKR 120
Query: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE
Sbjct: 121 QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGE 180
Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR
Sbjct: 181 FPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTVGR 240
Query: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
WAKGMSADYEEILDVPKPQKPKTKIPKVVNF
Sbjct: 241 WAKGMSADYEEILDVPKPQKPKTKIPKVVNF 271
>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
Length = 170
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 46 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 93
Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 94 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 125
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 81 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 128
Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 129 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 164
Score = 41.2 bits (95), Expect = 0.001
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 152 MGTGICYRCGSTEHEITKCKAKVDPALGE------FPFAK------CFVCGEMGHLSRSC 199
M + C++CG + H +C G F F C+ CGE GHL++ C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 200 PDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
L D C CG H+ KDC E
Sbjct: 61 -----DLQED--ACYNCGRGGHIAKDCKE 82
>gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]
Length = 177
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
+C+ C + GH DC D+ CY CG H CK +P C+
Sbjct: 53 ICYRCGESGHLAKDC-------DLQEDACYNCGRGGHIAKDCK---EPKREREQC--CYN 100
Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 101 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 132
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 88 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 135
Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 136 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 171
Score = 42.0 bits (97), Expect = 6e-04
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
CF C + GH +CP + G R G T + + P + C+ C
Sbjct: 6 CFKCGRSGHWARECPTG-GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-------CYRC 57
Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
GE GHL++ C L D C CG H+ KDC E
Sbjct: 58 GESGHLAKDC-----DLQED--ACYNCGRGGHIAKDCKE 89
>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
Length = 171
Score = 55.1 bits (131), Expect = 6e-08
Identities = 37/127 (29%), Positives = 50/127 (39%), Gaps = 36/127 (28%)
Query: 130 CFHCRKPGHGIADCPAA------LENQDMG--------TGICYRCGSTEHEITKCKAKVD 175
CF C + GH +CP + ++ G ICYRCG + H C + D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 176 PALGEF----PFAK------------CFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSV 219
A AK C+ CG+ GHL+R C +AD C CG
Sbjct: 66 EACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCD------HADEQKCYSCGEF 119
Query: 220 EHLKKDC 226
H++KDC
Sbjct: 120 GHIQKDC 126
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 82 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 129
Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 130 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 165
Score = 41.6 bits (96), Expect = 7e-04
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 152 MGTGICYRCGSTEHEITKCKAKVDPALGE------FPFAK------CFVCGEMGHLSRSC 199
M + C++CG + H +C G F F C+ CGE GHL++ C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 200 PDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
+ C CG H+ KDC E
Sbjct: 61 D------LQEDEACYNCGRGGHIAKDCKE 83
Score = 40.0 bits (92), Expect = 0.002
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG-----------CKLCGSVEHLKKDCPESQ 230
+CF CG GH +R CP +G+ + G G C CG HL KDC + Q
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-DLQ 63
Query: 231 NSERMVTVGR 240
E GR
Sbjct: 64 EDEACYNCGR 73
>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
Length = 172
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 83 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 130
Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 131 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 166
Score = 53.9 bits (128), Expect = 1e-07
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
+C+ C + GH DC + + CY CG H CK +P C+
Sbjct: 46 ICYRCGESGHLAKDCDLQEDVE-----ACYNCGRGGHIAKDCK---EPKREREQC--CYN 95
Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 96 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 127
Score = 44.3 bits (103), Expect = 1e-04
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
Query: 152 MGTGICYRCGSTEHEITKCKAKVDPALGE------FPFAK------CFVCGEMGHLSRSC 199
M + C++CG + H +C G F F C+ CGE GHL++ C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 200 PDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
L D C CG H+ KDC E
Sbjct: 61 D-----LQEDVEACYNCGRGGHIAKDCKE 84
Score = 41.6 bits (96), Expect = 7e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG-----------CKLCGSVEHLKKDCPESQ 230
+CF CG GH +R CP +G+ + G G C CG HL KDC +
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQE 64
Query: 231 NSERMVTVGR 240
+ E GR
Sbjct: 65 DVEACYNCGR 74
>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
Length = 178
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 89 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 136
Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 137 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 172
Score = 53.9 bits (128), Expect = 1e-07
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
+C+ C + GH DC + CY CG H CK +P C+
Sbjct: 53 ICYRCGESGHLAKDCDLQEDE------ACYNCGRGGHIAKDCK---EPKREREQC--CYN 101
Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 102 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 133
Score = 42.4 bits (98), Expect = 4e-04
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
CF C + GH +CP + G R G T + + P + C+ C
Sbjct: 6 CFKCGRSGHWARECPTG-GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-------CYRC 57
Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
GE GHL++ C + C CG H+ KDC E
Sbjct: 58 GESGHLAKDCD------LQEDEACYNCGRGGHIAKDCKE 90
Score = 37.4 bits (85), Expect = 0.014
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 22/77 (28%)
Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG------------------CKLCGSVEHLK 223
+CF CG GH +R CP +G+ + G G C CG HL
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 224 KDCPESQNSERMVTVGR 240
KDC + Q E GR
Sbjct: 65 KDC-DLQEDEACYNCGR 80
>gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]
Length = 179
Score = 54.7 bits (130), Expect = 8e-08
Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
++ ++ C++C KPGH DC A E + CY CG H I K KV
Sbjct: 90 KEPKREREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGH-IQKDCTKV----- 137
Query: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
KC+ CGE GH++ +C + C CG HL ++C
Sbjct: 138 -----KCYRCGETGHVAINCSKTSE------VNCYRCGESGHLAREC 173
Score = 53.9 bits (128), Expect = 1e-07
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
+C+ C + GH DC + + CY CG H CK +P C+
Sbjct: 53 ICYRCGESGHLAKDCDLQEDVE-----ACYNCGRGGHIAKDCK---EPKREREQC--CYN 102
Query: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDC 226
CG+ GHL+R C +AD C CG H++KDC
Sbjct: 103 CGKPGHLARDCD------HADEQKCYSCGEFGHIQKDC 134
Score = 45.1 bits (105), Expect = 7e-05
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
CF C + GH +CP + G R G T + + P + C+ C
Sbjct: 6 CFKCGRSGHWARECPTG-GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI-------CYRC 57
Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
GE GHL++ C L D C CG H+ KDC E
Sbjct: 58 GESGHLAKDCD-----LQEDVEACYNCGRGGHIAKDCKE 91
Score = 38.9 bits (89), Expect = 0.005
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 21/77 (27%)
Query: 185 KCFVCGEMGHLSRSCP---DNPKGLYADGGG------------------CKLCGSVEHLK 223
+CF CG GH +R CP +G+ + G G C CG HL
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 224 KDCPESQNSERMVTVGR 240
KDC ++ E GR
Sbjct: 65 KDCDLQEDVEACYNCGR 81
>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
Length = 166
Score = 51.6 bits (122), Expect = 7e-07
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
C+ C + G +C L N ICY CG + H CK DP C+ C
Sbjct: 47 CYCCGESGRNAKNC-VLLGN------ICYNCGRSGHIAKDCK---DPKRERRQH--CYTC 94
Query: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
G +GHL+R C D K C CG + H++KDC +
Sbjct: 95 GRLGHLARDC-DRQK-----EQKCYSCGKLGHIQKDCAQ 127
Score = 48.1 bits (113), Expect = 8e-06
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query: 129 VCFHCRKPGHGIADC--PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKC 186
+C++C + GH DC P Q CY CG H C + + KC
Sbjct: 66 ICYNCGRSGHIAKDCKDPKRERRQH-----CYTCGRLGHLARDCDRQKE--------QKC 112
Query: 187 FVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
+ CG++GH+ + C C CG + H+ +C +++
Sbjct: 113 YSCGKLGHIQKDCAQVK---------CYRCGEIGHVAINCSKAR 147
Score = 43.5 bits (101), Expect = 2e-04
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 131 FHCRKPGHGIADCPAALENQDMGTG--------------ICYRCGSTEHEITKCKAKVDP 176
F C GH CP G G CY CG + C
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL---- 62
Query: 177 ALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMV 236
LG C+ CG GH+++ C D + C CG + HL +DC + Q ++
Sbjct: 63 -LGNI----CYNCGRSGHIAKDCKDPKRERRQH---CYTCGRLGHLARDC-DRQKEQKCY 113
Query: 237 TVGR 240
+ G+
Sbjct: 114 SCGK 117
Score = 41.2 bits (95), Expect = 0.001
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 28/91 (30%)
Query: 109 KDSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEIT 168
KD +RE R+ C+ C + GH DC E + CY CG H I
Sbjct: 81 KDPKRERRQH-----------CYTCGRLGHLARDCDRQKEQK------CYSCGKLGH-IQ 122
Query: 169 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
K A+V KC+ CGE+GH++ +C
Sbjct: 123 KDCAQV----------KCYRCGEIGHVAINC 143
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 43.1 bits (100), Expect = 3e-04
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)
Query: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLC 216
C++CGS H C +CF CGE GHLS C KG+ C LC
Sbjct: 335 CFKCGSRTHMSGSCTQD-----------RCFRCGEEGHLSPYC---RKGIV-----CNLC 375
Query: 217 GSVEHLKKDCPES 229
G H CP++
Sbjct: 376 GKRGHAFAQCPKA 388
Score = 29.3 bits (64), Expect = 3.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 125 KNAMVCFHCRKPGHGIADCPAALEN 149
+ +VC C K GH A CP A+ N
Sbjct: 367 RKGIVCNLCGKRGHAFAQCPKAVHN 391
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 37.0 bits (84), Expect = 0.018
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
CY CG +H +CK P KC C + H+ SCP
Sbjct: 139 CYNCGGLDHHAKECKLPPQP-------KKCHFCQSISHMVASCP 175
Score = 32.3 bits (72), Expect = 0.45
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
+C+ CG + H ++ C P PK C C S+ H+ CP
Sbjct: 138 RCYNCGGLDHHAKECKLPPQPKK-------CHFCQSISHMVASCP 175
>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
sapiens]
Length = 217
Score = 35.8 bits (81), Expect = 0.041
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 181 FPFAKCFVCGEMGHLSRSCPDNPKG 205
F +KC+ CGE GHLS +CP N G
Sbjct: 102 FDKSKCYECGESGHLSYACPKNMLG 126
>gi|148886718 zinc finger, CCHC domain containing 4 [Homo sapiens]
Length = 513
Score = 35.0 bits (79), Expect = 0.069
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 146 ALENQDMGTGICYRCGSTE----HEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPD 201
+LENQ +C C S + + CK V P+ + C +C SC +
Sbjct: 388 SLENQHCE--LCNSCTSKDGRKWNHCFLCKKCVKPS-----WIHCSICNHCAVPDHSC-E 439
Query: 202 NPKGLYADGGGCKLCGSVEHLKKDCPESQNSER 234
PK GC +CG ++H + CP S+R
Sbjct: 440 GPKH------GCFICGELDHKRSTCPNIATSKR 466
Score = 30.4 bits (67), Expect = 1.7
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 143 CPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPD 201
C ++ + IC C +H E P CF+CGE+ H +CP+
Sbjct: 414 CKKCVKPSWIHCSICNHCAVPDHSC------------EGPKHGCFICGELDHKRSTCPN 460
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 34.7 bits (78), Expect = 0.091
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 13 KRPLPATSWEDMKKGSFEGTSQNLPKRKQ--LEANRLSLKNDAPQAKHKKNKKKKEYLNE 70
++ LP T +ED +K ++E + L KR+Q +E + + A + K + +K++E +
Sbjct: 356 QKKLPVT-FEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQ 414
Query: 71 DVNGFMEY---LRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQ 121
+ +E L + ++ + E RE L++ R E R++RQ
Sbjct: 415 EWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQ 468
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 34.7 bits (78), Expect = 0.091
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 13 KRPLPATSWEDMKKGSFEGTSQNLPKRKQ--LEANRLSLKNDAPQAKHKKNKKKKEYLNE 70
++ LP T +ED +K ++E + L KR+Q +E + + A + K + +K++E +
Sbjct: 356 QKKLPVT-FEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQ 414
Query: 71 DVNGFMEY---LRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQ 121
+ +E L + ++ + E RE L++ R E R++RQ
Sbjct: 415 EWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQ 468
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 34.7 bits (78), Expect = 0.091
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 13 KRPLPATSWEDMKKGSFEGTSQNLPKRKQ--LEANRLSLKNDAPQAKHKKNKKKKEYLNE 70
++ LP T +ED +K ++E + L KR+Q +E + + A + K + +K++E +
Sbjct: 356 QKKLPVT-FEDKRKANYERGNMELEKRRQALMEQQQREAERKAQKEKEEWERKQRELQEQ 414
Query: 71 DVNGFMEY---LRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQ 121
+ +E L + ++ + E RE L++ R E R++RQ
Sbjct: 415 EWKKQLELEKRLEKQRELERQREEERRKDIERREAAKQELERQRRLEWERIRRQ 468
>gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo
sapiens]
Length = 682
Score = 33.5 bits (75), Expect = 0.20
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 57 KHKKNKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEEVREEIAVALKKDSRREGR 116
K ++ +K KE+L F Y ++N + Q + T ++V+E V K +
Sbjct: 23 KEQRRQKLKEHLLRRKTLFA-YKQENEMLSSRDQRVVTSEDQVQEGTKVLKLKTKMADKE 81
Query: 117 RLKRQA-AKKNAMVCFHC--RKPGHGIADCPAALE 148
+KR A +K N +V HC KP + + + ++
Sbjct: 82 NMKRPAESKNNTVVGKHCIPLKPSNELTNSTVVID 116
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 33.5 bits (75), Expect = 0.20
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 21/91 (23%)
Query: 126 NAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITK--------CKAKVDPA 177
N C C K GH + DCP + + +R + E K + +DP
Sbjct: 1291 NDRCCRVCGKIGHYMKDCPKRKSS------LLFRLKKKDSEEEKEGNEEEKDSRDVLDPR 1344
Query: 178 -------LGEFPFAKCFVCGEMGHLSRSCPD 201
+ +CF+CG+ GH+ R CP+
Sbjct: 1345 DLHDTRDFRDPRDLRCFICGDAGHVRRECPE 1375
Score = 30.4 bits (67), Expect = 1.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 213 CKLCGSVEHLKKDCPESQNS 232
C++CG + H KDCP+ ++S
Sbjct: 1295 CRVCGKIGHYMKDCPKRKSS 1314
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 33.5 bits (75), Expect = 0.20
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 126 NAMVCFHCRKPGHGIADCPAA--LENQDMGTGICYRCGSTEHEITKCKAKVDPA------ 177
N C C K GH + DCP L+ +D + G+ E + ++ +DP
Sbjct: 1291 NDRCCRVCGKIGHYMKDCPKRKRLKKKDSEEE---KEGNEEEKDSR--DVLDPRDLHDTR 1345
Query: 178 -LGEFPFAKCFVCGEMGHLSRSCPD 201
+ +CF+CG+ GH+ R CP+
Sbjct: 1346 DFRDPRDLRCFICGDAGHVRRECPE 1370
Score = 28.9 bits (63), Expect = 5.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 213 CKLCGSVEHLKKDCPESQNSER 234
C++CG + H KDCP+ + ++
Sbjct: 1295 CRVCGKIGHYMKDCPKRKRLKK 1316
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 33.1 bits (74), Expect = 0.26
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 126 NAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITK--------CKAKVDPA 177
N C C K GH + DCP + +R + E K + +DP
Sbjct: 1291 NDRCCRVCGKIGHYMKDCPKR-------KSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPR 1343
Query: 178 -------LGEFPFAKCFVCGEMGHLSRSCPD 201
+ +CF+CG+ GH+ R CP+
Sbjct: 1344 DLHDTRDFRDPRDLRCFICGDAGHVRRECPE 1374
Score = 28.9 bits (63), Expect = 5.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 213 CKLCGSVEHLKKDCPESQN 231
C++CG + H KDCP+ ++
Sbjct: 1295 CRVCGKIGHYMKDCPKRKS 1313
>gi|51972214 lin-28 homolog B [Homo sapiens]
Length = 250
Score = 32.7 bits (73), Expect = 0.34
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCP 200
CY CG +H +C P KC C + H+ +CP
Sbjct: 129 CYNCGGLDHHAKECSLPPQP-------KKCHYCQSIMHMVANCP 165
Score = 31.6 bits (70), Expect = 0.77
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 185 KCFVCGEMGHLSRSC--PDNPKGLYADGGGCKLCGSVEHLKKDCP 227
+C+ CG + H ++ C P PK C C S+ H+ +CP
Sbjct: 128 RCYNCGGLDHHAKECSLPPQPK-------KCHYCQSIMHMVANCP 165
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 32.7 bits (73), Expect = 0.34
Identities = 33/157 (21%), Positives = 50/157 (31%), Gaps = 48/157 (30%)
Query: 110 DSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITK 169
++R GR +R + ++C +C K GH +CP + + C+ C H +
Sbjct: 223 NNRTPGRWTQRYYSANKNIICRNCDKRGHLSKNCPLPRKVRR-----CFLCSRRGHLLYS 277
Query: 170 CKAKVDPALGEFPFAK---------------CFVCGEMGHLSRSC--------------- 199
C A P P K C C +GH + +C
Sbjct: 278 CPA---PLCEYCPVPKMLDHSCLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGP 334
Query: 200 ------PDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
P P L C C H +CPE +
Sbjct: 335 PKKPKTPSRPSAL----AYCYHCAQKGHYGHECPERE 367
>gi|122937293 tubulin tyrosine ligase-like family, member 8 [Homo
sapiens]
Length = 834
Score = 32.3 bits (72), Expect = 0.45
Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 20/106 (18%)
Query: 114 EGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAK 173
EG K VC GH +A C D G G+C+ ++ +
Sbjct: 724 EGALRPPPGGKGEGTVCSRLPHHGHHVAACQTTGTTWDGGPGVCFL-----RQLLASELP 778
Query: 174 VDPALGEFPFA-KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGS 218
+ P L P A C VC +GL G CK C S
Sbjct: 779 MGPGLPRDPRAPPCLVC--------------RGLLPPAGPCKRCRS 810
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 31.6 bits (70), Expect = 0.77
Identities = 27/135 (20%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 20 SWEDMKKGSFEGTSQNLPKRKQL--EANRLSLKNDAPQAKHKKNKKKKEYLNEDVNGFME 77
+W MK+G E SQ + +++ E + + A Q + +K + ++E E ++
Sbjct: 866 AWLQMKEGKQEQQSQKQWQEEEMWKEEQKQATPKQAEQEEKQKQRGQEE--EELPKSSLQ 923
Query: 78 YLRQNSQ-MVHNGQIIATDSEEVREEIAVALKKDSRREGRRLKRQAAKKNAMVCFHCRKP 136
L + +Q M G ++ ++ ++R+ ++K+++ G +R+ K+ +KP
Sbjct: 924 RLEEGTQKMKTQGLLLEKENGQMRQ-----IQKEAKHLGPHRRREKGKEK-------QKP 971
Query: 137 GHGIADCPAALENQD 151
G+ D ++ +D
Sbjct: 972 ERGLEDLERQIKTKD 986
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 31.6 bits (70), Expect = 0.77
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 166 EITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYAD 209
+++ + + P +G+ + C+ CG+ GH S+ CP + G AD
Sbjct: 144 QLSTSRLRTAPGMGDQ--SGCYRCGKEGHWSKECPIDRSGRVAD 185
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 31.6 bits (70), Expect = 0.77
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 54 PQAKHKKNKKKKEYLNEDVNGFMEYLRQNS----------QMVHNGQIIATDSEEVREEI 103
P+ KK+ K+ E GF +R+ S Q++ + + +V EEI
Sbjct: 665 PKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNISKAKQLIEKAKALHISRSKVTEEI 724
Query: 104 AVALKKDSRRE 114
A+ L++ SR +
Sbjct: 725 AIPLRRSSRHQ 735
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 31.6 bits (70), Expect = 0.77
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 50 KNDAPQ---AKHKKNKKKKEYLNEDVNGFMEYLRQNSQMVH-NGQIIATDSEEVREEIAV 105
K PQ K KK KKK+++ +D+ +E L +Q + + + +A E EE
Sbjct: 33 KEQEPQKSKGKKKKEKKKQDFDEDDILKELEELSLEAQGIKADRETVAVKPTENNEEEFT 92
Query: 106 ALKKDSRREGRRLKRQAAKKN 126
+ KD +++G++ K+Q+ N
Sbjct: 93 S--KDKKKKGQKGKKQSFDDN 111
>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
sapiens]
Length = 783
Score = 31.6 bits (70), Expect = 0.77
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 37 PKRKQLEANRLSLKNDAPQAKHKKNKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIA--- 93
PK KQ++ + D K KK KKK+E D++ + LR+ + + + +
Sbjct: 53 PKAKQVKKKAEPSEVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKVVSSKTK 112
Query: 94 --TDSEEVREEIAVALKKDSRREGRRLKRQAAKKN 126
T +EE EE A K ++ + + + +K+
Sbjct: 113 KVTKNEEPSEEEIDAPKPKKMKKEKEMNGETREKS 147
>gi|88759339 aster-associated protein [Homo sapiens]
Length = 647
Score = 31.6 bits (70), Expect = 0.77
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 39 RKQLEANRLSLKNDAPQAKHKKNKKKKEYLNEDVNGFMEYLRQNSQMVHNGQIIATDSEE 98
+K+ E + K +A QA K +KK EYL E EY R Q T +E+
Sbjct: 498 KKKTEEENAARKGEALQAFEKWKEKKMEYLKEKNRKEREYERAKKQKEEE-----TVAEK 552
Query: 99 VREEIAVALKKDSRREGRRLKRQAAKKN 126
++ + K + ++E +++ K N
Sbjct: 553 KKDNLTAVEKWNEKKEAFFKQKEKEKIN 580
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,514,601
Number of Sequences: 37866
Number of extensions: 536746
Number of successful extensions: 2425
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 2097
Number of HSP's gapped (non-prelim): 294
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.