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Search of human proteins with 195972805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo
sapiens]
(429 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 867 0.0
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 859 0.0
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 833 0.0
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 767 0.0
gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens] 354 1e-97
gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens] 344 1e-94
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 335 4e-92
gi|239747524 PREDICTED: similar to serum response factor-related... 312 3e-85
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 57 4e-08
gi|55750053 atrophin-1 [Homo sapiens] 55 1e-07
gi|55750041 atrophin-1 [Homo sapiens] 55 1e-07
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 55 2e-07
gi|196114999 special AT-rich sequence binding protein 1 [Homo sa... 54 3e-07
gi|4506791 special AT-rich sequence binding protein 1 [Homo sapi... 54 3e-07
gi|33286444 mastermind-like 2 [Homo sapiens] 54 4e-07
gi|169636435 caudal type homeobox 2 [Homo sapiens] 52 8e-07
gi|90903231 huntingtin [Homo sapiens] 52 8e-07
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 52 8e-07
gi|56549696 E1A binding protein p400 [Homo sapiens] 50 3e-06
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 50 3e-06
gi|110347429 mediator complex subunit 12 [Homo sapiens] 50 4e-06
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 50 5e-06
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 50 5e-06
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 50 5e-06
gi|50345997 E1A binding protein p300 [Homo sapiens] 49 7e-06
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 49 7e-06
gi|116284392 mucin 2 precursor [Homo sapiens] 49 9e-06
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 48 1e-05
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 48 1e-05
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 48 1e-05
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 867 bits (2239), Expect = 0.0
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR
Sbjct: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN
Sbjct: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
Query: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVT 240
MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVT
Sbjct: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVT 240
Query: 241 TPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALS 300
TPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALS
Sbjct: 241 TPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALS 300
Query: 301 SLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQ 360
SLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQ
Sbjct: 301 SLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQ 360
Query: 361 PQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVK 420
PQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVK
Sbjct: 361 PQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVK 420
Query: 421 RMRMDAWVT 429
RMRMDAWVT
Sbjct: 421 RMRMDAWVT 429
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 859 bits (2220), Expect = 0.0
Identities = 429/437 (98%), Positives = 429/437 (98%), Gaps = 8/437 (1%)
Query: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR
Sbjct: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN
Sbjct: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
Query: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP--------LNTQRISSSQATQPL 232
MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP LNTQRISSSQATQPL
Sbjct: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPL 240
Query: 233 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH 292
ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH
Sbjct: 241 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH 300
Query: 293 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ 352
HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ
Sbjct: 301 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ 360
Query: 353 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 412
PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE
Sbjct: 361 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 420
Query: 413 DRESPSVKRMRMDAWVT 429
DRESPSVKRMRMDAWVT
Sbjct: 421 DRESPSVKRMRMDAWVT 437
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 833 bits (2151), Expect = 0.0
Identities = 411/412 (99%), Positives = 412/412 (100%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVP 77
+TLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVP
Sbjct: 86 ETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVP 145
Query: 78 VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGG 137
VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGG
Sbjct: 146 VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGG 205
Query: 138 MLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN 197
MLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN
Sbjct: 206 MLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN 265
Query: 198 SRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTA 257
SRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTA
Sbjct: 266 SRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTA 325
Query: 258 YNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSIN 317
YNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSIN
Sbjct: 326 YNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSIN 385
Query: 318 TNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPV 377
TNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPV
Sbjct: 386 TNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPV 445
Query: 378 DSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT 429
DSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
Sbjct: 446 DSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT 497
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 767 bits (1981), Expect = 0.0
Identities = 382/414 (92%), Positives = 394/414 (95%), Gaps = 2/414 (0%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGP--PGLPPQNFSMSVT 75
+ L KK GC+SPD D + +P +E+++ K+NE+ D + + PGLPPQNFSMSVT
Sbjct: 86 EALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVT 145
Query: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 135
VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA
Sbjct: 146 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 205
Query: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG
Sbjct: 206 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 265
Query: 196 MNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMP 255
MNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMP
Sbjct: 266 MNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMP 325
Query: 256 TAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLS 315
TAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLS
Sbjct: 326 TAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLS 385
Query: 316 INTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRS 375
INTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRS
Sbjct: 386 INTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRS 445
Query: 376 PVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT 429
PVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
Sbjct: 446 PVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT 499
>gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens]
Length = 473
Score = 354 bits (908), Expect = 1e-97
Identities = 223/431 (51%), Positives = 275/431 (63%), Gaps = 62/431 (14%)
Query: 18 QTLRKKGLNGCESPD--ADDYFEHSPLSEDRFSKLNEDSDFIFKRGPP-GLPPQNFSMSV 74
+TLRKKGLNGC+SPD ADD HSP SED++ K+NED D + R +PP NF M V
Sbjct: 86 ETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQRLCAVPPPNFEMPV 145
Query: 75 TVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN-VSPGAPQRPPSTG 133
++PV+S N+L Y+NP SSL +P+L L +L RN +SPG RPPS G
Sbjct: 146 SIPVSSHNSLVYSNPVSSLGNPNL-----------LPLAHPSLQRNSMSPGVTHRPPSAG 194
Query: 134 NAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGN 193
N GG++ DLT +GAG+S GNG+ N R SP L+ + G +L K M KSPPP N
Sbjct: 195 NTGGLMGG-DLT--SGAGTS-AGNGYGNPRNSPGLLVSPG--NLNKNMQAKSPPPM---N 245
Query: 194 LGMNSRKPDLRVVIPPSSKGMMPPLN-------TQRISSSQATQPLATPVVSVTTPSLPP 246
LGMN+RKPDLRV+IPP SK MP ++ QRI++SQ+ Q LATPVVSV TP+LP
Sbjct: 246 LGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQRINNSQSAQSLATPVVSVATPTLPG 305
Query: 247 QGL--VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ---AALSS 301
QG+ SA+ T Y T+YSL+SADLS+L GFN+ L LG V+ WQQ HL +ALS
Sbjct: 306 QGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQQHLHNMPPSALSQ 365
Query: 302 LVA--GGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQP 359
L A LSQ SNLS+ + Q+++IKSEP+SPPRDR T P
Sbjct: 366 LGACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRDRTTT------------------PSR 407
Query: 360 QPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSV 419
PQ R E GRSPVDSLSS SSSYDGSDRED R +FHSPI L R P+ ++RESPSV
Sbjct: 408 YPQ----HTRHEAGRSPVDSLSSCSSSYDGSDREDHRNEFHSPIGLTR-PSPDERESPSV 462
Query: 420 KRMRM-DAWVT 429
KRMR+ + W T
Sbjct: 463 KRMRLSEGWAT 473
>gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens]
Length = 463
Score = 344 bits (882), Expect = 1e-94
Identities = 214/422 (50%), Positives = 269/422 (63%), Gaps = 54/422 (12%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGP-PGLPPQNFSMSVTV 76
+ L KK GCESPD D + +P +E+++ K+NE+ D + K P +PP NF M V++
Sbjct: 86 EALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHKIPAVPPPNFEMPVSI 145
Query: 77 PVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN-VSPGAPQRPPSTGNA 135
PV+S N+L Y+NP SSL +P+L L +L RN +SPG RPPS GN
Sbjct: 146 PVSSHNSLVYSNPVSSLGNPNL-----------LPLAHPSLQRNSMSPGVTHRPPSAGNT 194
Query: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
GG++ DLT +GAG+S GNG+ N R SP L+ + G +L K M KSPPP NLG
Sbjct: 195 GGLMGG-DLT--SGAGTS-AGNGYGNPRNSPGLLVSPG--NLNKNMQAKSPPPM---NLG 245
Query: 196 MNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGL--VYSA 253
MN+RKPDLRV+IPP SK MP +N QRI++SQ+ Q LATPVVSV TP+LP QG+ SA
Sbjct: 246 MNNRKPDLRVLIPPGSKNTMPSVN-QRINNSQSAQSLATPVVSVATPTLPGQGMGGYPSA 304
Query: 254 MPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ---AALSSLVA--GGQL 308
+ T Y T+YSL+SADLS+L GFN+ L LG V+ WQQ HL +ALS L A L
Sbjct: 305 ISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQQHLHNMPPSALSQLGACTSTHL 364
Query: 309 SQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 368
SQ SNLS+ + Q+++IKSEP+SPPRDR T P PQ
Sbjct: 365 SQSSNLSLPSTQSLNIKSEPVSPPRDRTTT------------------PSRYPQ----HT 402
Query: 369 RQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRM-DAW 427
R E GRSPVDSLSS SSSYDGSDRED R +FHSPI L R P+ ++RESPSVKRMR+ + W
Sbjct: 403 RHEAGRSPVDSLSSCSSSYDGSDREDHRNEFHSPIGLTR-PSPDERESPSVKRMRLSEGW 461
Query: 428 VT 429
T
Sbjct: 462 AT 463
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 335 bits (860), Expect = 4e-92
Identities = 210/462 (45%), Positives = 265/462 (57%), Gaps = 81/462 (17%)
Query: 18 QTLRKKGLNGCESP--DADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVT 75
+TLRKKG NGC+SP D +D E SPL ED++ + +E+ D +F+R +P NF+M VT
Sbjct: 86 ETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSTVPAPNFAMPVT 145
Query: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN-VSPGAPQRPPSTGN 134
VPV++ ++L ++NP SLV+PSL SS LTD +LSP Q L RN VSPG PQRP S
Sbjct: 146 VPVSNQSSLQFSNPSGSLVTPSLVTSS-LTDPRLLSPQQPALQRNSVSPGLPQRPAS--- 201
Query: 135 AGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGN- 193
AG ML DL NGA SPVGNG+V++RASP L+ NSL KV+P KSPPPP
Sbjct: 202 AGAMLGG-DLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSTQ 260
Query: 194 LGMNSRKPDLRVVIPPSSKGMMPPL--------NTQRISSSQATQPLATPVVSVTTPSLP 245
LG SRKPDLRV+ + KG+M L N QR+ SQ+T L TPVVSV TPSL
Sbjct: 261 LGAPSRKPDLRVITSQAGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL 320
Query: 246 PQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAW---------------- 289
QGL +S+MPTAYNTDY LTSA+LS+L F+SPG LSLG V+AW
Sbjct: 321 SQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNVTAWQQPQQPQQPQQPQPPQ 380
Query: 290 ----------------------QQHHLGQAALSSLVAGGQLSQ-GSNLSINTNQNISIKS 326
QQ HL +LS+L+ G L G+ L++ T+ +ISIKS
Sbjct: 381 QQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKS 440
Query: 327 EPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSS-SSS 385
EP+SP R+R P PPP +P+P D LSS +
Sbjct: 441 EPVSPSRER----------------SPAPPPPAVFPAARPEPG--------DGLSSPAGG 476
Query: 386 SYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAW 427
SY+ DR+D RGDF + L RP + E +VKRMR+D W
Sbjct: 477 SYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTW 518
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 312 bits (800), Expect = 3e-85
Identities = 158/203 (77%), Positives = 170/203 (83%), Gaps = 2/203 (0%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRG--PPGLPPQNFSMSVT 75
+ L KK GC+S D D +P +E+++ K+NE+ D + + PGLPPQNFSMSVT
Sbjct: 204 EALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMSVT 263
Query: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 135
VPV SPNALSYTNPGSSLVSPSLAASSTLTD + LSPPQT LHRNVSPGAPQRPPSTGNA
Sbjct: 264 VPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPSTGNA 323
Query: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
GGML TTDLTVPNG GSSPVGN FVNSRASPNLIGATGANSLGKVMPTKSPPPPGG NLG
Sbjct: 324 GGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGSNLG 383
Query: 196 MNSRKPDLRVVIPPSSKGMMPPL 218
MNS KPDLRVVIP SSKGM PPL
Sbjct: 384 MNSGKPDLRVVIPASSKGMTPPL 406
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 56.6 bits (135), Expect = 4e-08
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 34/204 (16%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A SST+T SS L +
Sbjct: 3945 GTPPSLITTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHT 4004
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPN-GAGSSPVGNGFVNSR 163
PP TT R++SP +P R T G L TT +T P+ G +P
Sbjct: 4005 PPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQH 4064
Query: 164 ASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRI 223
++P L ++ T+SPP PG G + PS R
Sbjct: 4065 STPALSSPHPSS-----RTTESPPSPGTTTPGHTTATSRTTATATPSK---------TRT 4110
Query: 224 SSSQATQPLATPVVSVTTPSLPPQ 247
S+ + P + P+ +V T PQ
Sbjct: 4111 STLLPSSPTSAPITTVVTTGCEPQ 4134
Score = 54.7 bits (130), Expect = 2e-07
Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 34/204 (16%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A SST+T SS L +
Sbjct: 2688 GTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHT 2747
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPN-GAGSSPVGNGFVNSR 163
PP TT R++SP +P R T G L TT +T P+ G +P
Sbjct: 2748 PPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQH 2807
Query: 164 ASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRI 223
++P L ++ T+SPP PG G PS R
Sbjct: 2808 STPALSSPHPSS-----RTTESPPSPGTTTPGHTRATSRTTATATPSK---------TRT 2853
Query: 224 SSSQATQPLATPVVSVTTPSLPPQ 247
S+ + P + P+ +V T PQ
Sbjct: 2854 STLLPSSPTSAPITTVVTMGCEPQ 2877
Score = 52.0 bits (123), Expect = 1e-06
Identities = 53/204 (25%), Positives = 79/204 (38%), Gaps = 34/204 (16%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A SST+T SS L +
Sbjct: 3388 GTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHT 3447
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPNGAGS-SPVGNGFVNSR 163
PP TT R++ P +P R T G+L TT +T P+ S +P
Sbjct: 3448 PPVPNTTATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATTSTTQH 3507
Query: 164 ASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRI 223
++P L ++ T+SPP PG G PS R
Sbjct: 3508 STPALSSPHPSS-----RTTESPPSPGTTTPGHTRGTSRTTATATPSK---------TRT 3553
Query: 224 SSSQATQPLATPVVSVTTPSLPPQ 247
S+ + P + P+ +V T PQ
Sbjct: 3554 STLLPSSPTSAPITTVVTTGCEPQ 3577
Score = 50.4 bits (119), Expect = 3e-06
Identities = 51/203 (25%), Positives = 80/203 (39%), Gaps = 32/203 (15%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A S+T+T SS L +
Sbjct: 2131 GTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSNTVTPSSALGTTHT 2190
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRA 164
PP TT R++ P +P R T G+L TT +T P+ S + ++
Sbjct: 2191 PPVPNTMATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTLAATTGTTQH 2250
Query: 165 SPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRIS 224
S + + +S T+SPP PG G + PS R S
Sbjct: 2251 STPALSSPHPSS----RTTESPPSPGTTTPGHTTATSRTTATATPSK---------TRTS 2297
Query: 225 SSQATQPLATPVVSVTTPSLPPQ 247
+ + P + P+ +V T PQ
Sbjct: 2298 TLLPSSPTSAPITTVVTMGCEPQ 2320
Score = 40.8 bits (94), Expect = 0.002
Identities = 55/226 (24%), Positives = 82/226 (36%), Gaps = 49/226 (21%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQR 128
N+ + P TS A+ + PG++ + L ++T T+S+ G+
Sbjct: 2413 NYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTEST---------------GSTAT 2457
Query: 129 PPSTGNAGGML----STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTK 184
P ST +L +T +TVP G+ ++ + T + K P
Sbjct: 2458 PSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFS 2517
Query: 185 SPPPPGGGNLGMNSRKPDLR-----------VVIPPSSKGMMPPLNTQRISSSQATQPLA 233
SP G + P LR IP SS L T SQ T P A
Sbjct: 2518 SP--------GTATALPALRSTATTPTATSFTAIPSSS------LGTTWTRLSQTTTPTA 2563
Query: 234 TPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG 279
T +S TPS P+ + S T T + T A S ++PG
Sbjct: 2564 T--MSTATPSSTPETVHTS---TVLTTTATTTGATGSVATPSSTPG 2604
Score = 39.3 bits (90), Expect = 0.007
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 26/230 (11%)
Query: 66 PPQNFSMSVTVP-VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP-PQTTLHRNVSP 123
PP+ + + T P VTS A ++PG++ P+L +++T ++ ++P P ++L +
Sbjct: 1938 PPKVLTTTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSVTPIPSSSLGTTWT- 1996
Query: 124 GAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPT 183
+ +T M + T + P A +S V + + + AT +++ G T
Sbjct: 1997 ---RLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSV-ATPSSTPGTAHTT 2052
Query: 184 KSPPPPGGGNLGMNSRKPDLRVVIP--------PSSKGMMPPLNTQRISSSQATQPLATP 235
K P G S P + P P+++G +T SS T AT
Sbjct: 2053 KVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRG-----STVTPSSIPGTTHTATV 2107
Query: 236 VVSVTTP------SLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG 279
+ + TT + P S P + T + +A S ++PG
Sbjct: 2108 LTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPG 2157
Score = 39.3 bits (90), Expect = 0.007
Identities = 50/207 (24%), Positives = 75/207 (36%), Gaps = 17/207 (8%)
Query: 67 PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLH 118
P + + T VTS A +++PG++ P+L A S T SS L T L
Sbjct: 3754 PHVSTTATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLS 3813
Query: 119 RNVSPGA------PQRPPSTGNAGGMLSTTDLTV-PNGAGSSPVGNGFVNSRASPNLIGA 171
+ +P A P P T + +L+TT T G+ ++P
Sbjct: 3814 QTTTPTATMSTATPSSTPETAHTSTVLTTTATTTRATGSVATPSSTPGTAHTTKVPTTTT 3873
Query: 172 TGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMM-PPLNTQRISSSQATQ 230
TG P + PP + + V P S G P +++ AT
Sbjct: 3874 TGFTVTPSSSPGTARTPPVWIST-TTTPTTSGSTVTPSSVPGTTHTPTVLTTTTTTVATG 3932
Query: 231 PLATPVVSVTTPSLPPQGLVYSAMPTA 257
+ATP S T PP + + TA
Sbjct: 3933 SMATPSSSTQTSGTPPSLITTATTITA 3959
Score = 38.5 bits (88), Expect = 0.012
Identities = 55/226 (24%), Positives = 80/226 (35%), Gaps = 49/226 (21%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQR 128
N+ + P TS A + PG++ + L ++T T+S+ G+
Sbjct: 3670 NYGHCPSTPATSSTATPSSTPGTTWILTKLTTTATTTEST---------------GSTAT 3714
Query: 129 PPSTGNAGGML----STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTK 184
P ST +L +T +TVP G+ ++ + T + K P
Sbjct: 3715 PSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFS 3774
Query: 185 SPPPPGGGNLGMNSRKPDLR-----------VVIPPSSKGMMPPLNTQRISSSQATQPLA 233
SP G + P LR IP SS L T SQ T P A
Sbjct: 3775 SP--------GTATALPALRSTATTPTATSFTAIPSSS------LGTTWTRLSQTTTPTA 3820
Query: 234 TPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG 279
T +S TPS P+ S T T + T A S ++PG
Sbjct: 3821 T--MSTATPSSTPETAHTS---TVLTTTATTTRATGSVATPSSTPG 3861
Score = 38.5 bits (88), Expect = 0.012
Identities = 51/210 (24%), Positives = 74/210 (35%), Gaps = 46/210 (21%)
Query: 73 SVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPST 132
+ T T P A + PG++ + L ++T T S G+ P ST
Sbjct: 4402 ATTTAATGPTATPSSTPGTTWILTELTTTATTT---------------ASTGSTATPSST 4446
Query: 133 GNAGGML----STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPP 188
+L +T +TVP G+ ++ + T + K P+ SP
Sbjct: 4447 PGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPSSSP-- 4504
Query: 189 PGGGNLGMNSRKPDLR-----------VVIPPSSKGMMPPLNTQRISSSQATQPLATPVV 237
G + P LR IP SS L T SQ T P AT +
Sbjct: 4505 ------GTATALPALRSTATTPTATSFTAIPSSS------LGTTWTRLSQTTTPTAT--M 4550
Query: 238 SVTTPSLPPQGLVYSAMPTAYNTDYSLTSA 267
S TPS P+ + S + TA T T +
Sbjct: 4551 STATPSSTPETVHTSTVLTATATTTGATGS 4580
Score = 38.1 bits (87), Expect = 0.015
Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 20/225 (8%)
Query: 73 SVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPP-----QTTLHRNVSPGAPQ 127
SV P ++P ++T + + A+ + + + L+PP TT S P
Sbjct: 3295 SVATPSSTPGT-AHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRGSTVTPS 3353
Query: 128 RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNL------IGATGANSLGKVM 181
P T + +L+TT TV G+ ++P + S P+L I ATG+ +
Sbjct: 3354 SIPGTTHTATVLTTTTTTVATGSMATP-SSSTQTSGTPPSLTTTATTITATGSTTNPSST 3412
Query: 182 PTKSPPPPGGGNLGMNSRKP--DLRVVIPPSSKGM--MPPLNTQRISSSQATQPLATPVV 237
P +P PP L + P V P S+ G PP+ ++ + P ++P
Sbjct: 3413 PGTTPIPP---VLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLPPSSPHT 3469
Query: 238 SVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLS 282
T + G++ + T +T S T A ++ ++P + S
Sbjct: 3470 VRTAWTSATSGILGTTHITEPSTVTSHTPAATTSTTQHSTPALSS 3514
Score = 37.0 bits (84), Expect = 0.034
Identities = 50/200 (25%), Positives = 74/200 (37%), Gaps = 25/200 (12%)
Query: 67 PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLH 118
P + + T VTS A +++PG++ P+L A S T SS L T L
Sbjct: 2497 PHVSTTATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLS 2556
Query: 119 RNVSPGA------PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT 172
+ +P A P P T + +L+TT T GS + + + ++ T
Sbjct: 2557 QTTTPTATMSTATPSSTPETVHTSTVLTTT-ATTTGATGSVATPSSTPGTAHTTKVLTTT 2615
Query: 173 GANSLGKVMPTKSPPPPGGGNLGM---NSRKPDLR--VVIPPSSKGMM-PPLNTQRISSS 226
T S P L + + P R V P S G P +++
Sbjct: 2616 TTG----FTATPSSSPGTARTLPVWISTTTTPTTRGSTVTPSSIPGTTHTPTVLTTTTTT 2671
Query: 227 QATQPLATPVVSVTTPSLPP 246
AT +ATP S T PP
Sbjct: 2672 VATGSMATPSSSTQTSGTPP 2691
Score = 36.2 bits (82), Expect = 0.059
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 24/185 (12%)
Query: 76 VPVTSPNALSYT---NPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPST 132
VP T+ + T +PG++L P +++T +P TT + S P P T
Sbjct: 4596 VPTTTTTGFTATPSSSPGTALTPPVWISTTT-------TPTTTTPTTSGSTVTPSSIPGT 4648
Query: 133 GNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGG 192
+ +L+TT TV G+ ++P + S P+L T A ++ T +P
Sbjct: 4649 THTARVLTTTTTTVATGSMATP-SSSTQTSGTPPSL--TTTATTITATGSTTNP------ 4699
Query: 193 NLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYS 252
S P + P + P T ++S ++ AT + +T+ + ++
Sbjct: 4700 -----SSTPGTTPITPVLTSTATTPAATSSKATSSSSPRTATTLPVLTSTATKSTATSFT 4754
Query: 253 AMPTA 257
+P++
Sbjct: 4755 PIPSS 4759
Score = 35.8 bits (81), Expect = 0.077
Identities = 55/241 (22%), Positives = 82/241 (34%), Gaps = 46/241 (19%)
Query: 67 PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLH 118
P + + T VTS A ++PG++ P+L A S T SS L T L
Sbjct: 4482 PHVSTTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLS 4541
Query: 119 RNVSPGA------PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT 172
+ +P A P P T + +L+ T T GA S AT
Sbjct: 4542 QTTTPTATMSTATPSSTPETVHTSTVLTATATT--TGATGSV----------------AT 4583
Query: 173 GANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPL 232
+++ G TK P G S P + P P T +S P
Sbjct: 4584 PSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTTTPTTSGSTVTPS 4643
Query: 233 ATP-------VVSVTTPSL-------PPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSP 278
+ P V++ TT ++ P S P + T + +A S ++P
Sbjct: 4644 SIPGTTHTARVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTP 4703
Query: 279 G 279
G
Sbjct: 4704 G 4704
Score = 35.4 bits (80), Expect = 0.10
Identities = 56/237 (23%), Positives = 87/237 (36%), Gaps = 51/237 (21%)
Query: 71 SMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLHRNVS 122
S + T V S A ++PG++ P+L A S T SS L T L + +
Sbjct: 3201 STATTPTVISSRATPSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTAWTRLSQTTT 3260
Query: 123 PGA------PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANS 176
P A P P T + +L+TT T +RA+ ++ AT +++
Sbjct: 3261 PTATMSTATPSSTPETVHTSTVLTTTTTT----------------TRATGSV--ATPSST 3302
Query: 177 LGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIP--------PSSKGMMPPLNTQRISSSQA 228
G TK P G S P + P P+++G +T SS
Sbjct: 3303 PGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRG-----STVTPSSIPG 3357
Query: 229 TQPLATPVVSVTTP------SLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG 279
T AT + + TT + P S P + T + +A S ++PG
Sbjct: 3358 TTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPG 3414
Score = 34.3 bits (77), Expect = 0.22
Identities = 55/215 (25%), Positives = 81/215 (37%), Gaps = 42/215 (19%)
Query: 73 SVTVPVTSPNA------LSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAP 126
S++ P ++P L+ ++ P+ SST + +L+ P TT V G+
Sbjct: 3124 SMSTPSSTPGTTWILTELTTAATTTAATGPTATPSSTPGTTWILTEPSTTATVTVPTGST 3183
Query: 127 QRPPSTGNAGGMLS--TTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTK 184
ST G L T+ T P ++SRA+P+ T A +L + T
Sbjct: 3184 ATASSTRATAGTLKVLTSTATTPT----------VISSRATPSSSPGT-ATALPALRSTA 3232
Query: 185 SPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSL 244
+ P IP SS L T SQ T P AT +S TPS
Sbjct: 3233 TTPTATS------------VTAIPSSS------LGTAWTRLSQTTTPTAT--MSTATPSS 3272
Query: 245 PPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG 279
P+ + S T T + T A S ++PG
Sbjct: 3273 TPETVHTS---TVLTTTTTTTRATGSVATPSSTPG 3304
Score = 34.3 bits (77), Expect = 0.22
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 23/204 (11%)
Query: 73 SVTVPVTSPNALSYTNPGSSL-----VSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQ 127
SV P ++P T ++ V+PS + + T +S TT + S P
Sbjct: 3852 SVATPSSTPGTAHTTKVPTTTTTGFTVTPSSSPGTARTPPVWISTT-TTPTTSGSTVTPS 3910
Query: 128 RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPP 187
P T + +L+TT TV G+ ++P + S P+LI T A ++ T +P
Sbjct: 3911 SVPGTTHTPTVLTTTTTTVATGSMATP-SSSTQTSGTPPSLI--TTATTITATGSTTNPS 3967
Query: 188 PPGGGNLGMNSRKPDLRVVIPP--SSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLP 245
G IPP ++ P + ++ S A TP V TT +
Sbjct: 3968 STPG------------TTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTH 4015
Query: 246 PQGLVYSAMPTAYNTDYSLTSADL 269
+ L S+ T S TS L
Sbjct: 4016 GRSLSPSSPHTVRTAWTSATSGTL 4039
Score = 33.5 bits (75), Expect = 0.38
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 17/196 (8%)
Query: 66 PPQNFSMSVT------------VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPP 113
PP S + T +P T+ A T +++ + S+A S+ T +S P
Sbjct: 3333 PPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPS 3392
Query: 114 QTTLHRNV-SPGAPQRPPSTGNAGGM--LSTTDLTVPNGAGSSPVGNGFVNSRASPNLIG 170
TT + + G+ P ST + + TT T P S+ + + + +P +
Sbjct: 3393 LTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPN 3452
Query: 171 ATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQ 230
T A + G+ +P SP S + PS+ P T ++ +T
Sbjct: 3453 TT-ATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATTS-TTQHSTP 3510
Query: 231 PLATPVVSVTTPSLPP 246
L++P S T PP
Sbjct: 3511 ALSSPHPSSRTTESPP 3526
Score = 33.5 bits (75), Expect = 0.38
Identities = 46/221 (20%), Positives = 77/221 (34%), Gaps = 26/221 (11%)
Query: 62 PPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 121
P +P + +V T+ A SS S S +T ++ ++ +T + +
Sbjct: 3909 PSSVPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLITTATTITATGSTTNPSS 3968
Query: 122 SPGAPQRPP-STGNAGGMLSTTDLTVPNGA----GSSPVGN------GFVNSRASPNLIG 170
+PG PP T A +T+ P+ A + PV N G S +SP+ +
Sbjct: 3969 TPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVR 4028
Query: 171 ATGANSLGKVMPTKSPPPPGGGNL---------------GMNSRKPDLRVVIPPSSKGMM 215
++ + T P G ++S P R P S G
Sbjct: 4029 TAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRTTESPPSPGTT 4088
Query: 216 PPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPT 256
P +T S + AT + S PS P + + + T
Sbjct: 4089 TPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTT 4129
Score = 33.1 bits (74), Expect = 0.50
Identities = 43/208 (20%), Positives = 75/208 (36%), Gaps = 24/208 (11%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSS--LVSPSLAASSTLTDSSMLSPPQ------------ 114
++S + P TS A + PG++ L P+ A++T + S +P
Sbjct: 1884 DYSHCPSTPATSSTATPSSTPGTTWILTKPTTTATTTASTGSTATPTSTLRTAPPPKVLT 1943
Query: 115 ---TTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGA 171
TT S P P T A L +T T P +P+ + + + +
Sbjct: 1944 TTATTPTVTSSKATPSSSPGTATALPALRST-ATTPTATSVTPIPSSSLGTTWTRLSQTT 2002
Query: 172 TGANSLGKVMPTKSPPPPGGGNL---GMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQA 228
T ++ P+ +P + + V P S+ G +T ++ ++
Sbjct: 2003 TPTATMSTATPSSTPETAHTSTVLTATATTTGATGSVATPSSTPG---TAHTTKVPTTTT 2059
Query: 229 TQPLATPVVSVTTPSLPPQGLVYSAMPT 256
T ATP S T PP + + PT
Sbjct: 2060 TGFTATPSSSPGTALTPPVWISTTTTPT 2087
Score = 33.1 bits (74), Expect = 0.50
Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 31/211 (14%)
Query: 62 PPGLPPQNFSMSVTVPVTSPNAL-SYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
P +P + +V T+ A S P SS + S T T +++ + TT + +
Sbjct: 2652 PSSIPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTT-NPS 2710
Query: 121 VSPGAPQRPP-STGNAGGMLSTTDLTVPNGA----GSSPVGN------GFVNSRASPNLI 169
+PG PP T A +T+ P+ A + PV N G S +SP+ +
Sbjct: 2711 STPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTV 2770
Query: 170 GATGANSLGKVMPTKSPPPPGGGNL---------------GMNSRKPDLRVVIPPSSKGM 214
++ + T P G ++S P R P S G
Sbjct: 2771 RTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRTTESPPSPGT 2830
Query: 215 MPPLNTQRISSSQATQPLATPVVSVTTPSLP 245
P +T+ S + AT ATP + T+ LP
Sbjct: 2831 TTPGHTRATSRTTAT---ATPSKTRTSTLLP 2858
Score = 33.1 bits (74), Expect = 0.50
Identities = 42/180 (23%), Positives = 68/180 (37%), Gaps = 19/180 (10%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQR 128
N+ + P TS A+ + PG++ + L ++T T S+ S P
Sbjct: 4227 NYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTAST------------GSTATPSS 4274
Query: 129 PPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLG-KVMPTKSPP 187
P T +L T+ T P S + + + ++ +T S V P S
Sbjct: 4275 TPGTAPPPKVL-TSPATTPTATSSKATSSSSPRTATTLPVLTSTATKSTATSVTPIPSST 4333
Query: 188 PPGGGNLGMNSRKPDLRV-VIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPP 246
G L + P + I PSS +T + +++AT AT S +TPS P
Sbjct: 4334 LGTTGTLPEQTTTPVATMSTIHPSS--TPETTHTSTVLTTKATTTRATS--STSTPSSTP 4389
Score = 32.7 bits (73), Expect = 0.65
Identities = 48/181 (26%), Positives = 61/181 (33%), Gaps = 33/181 (18%)
Query: 89 PGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAG--GMLSTTDLTV 146
P + S + SST + +L+ P TT S G+ P ST + TT T
Sbjct: 1889 PSTPATSSTATPSSTPGTTWILTKPTTTATTTASTGSTATPTSTLRTAPPPKVLTTTATT 1948
Query: 147 PNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVV 206
P S +SP A A PT + P
Sbjct: 1949 PTVTSSK------ATPSSSPGTATALPALRSTATTPTATSVTP----------------- 1985
Query: 207 IPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTS 266
IP SS L T SQ T P AT +S TPS P+ S + TA T T
Sbjct: 1986 IPSSS------LGTTWTRLSQTTTPTAT--MSTATPSSTPETAHTSTVLTATATTTGATG 2037
Query: 267 A 267
+
Sbjct: 2038 S 2038
Score = 31.2 bits (69), Expect = 1.9
Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 40/208 (19%)
Query: 75 TVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVS-----------P 123
++P T+ A T +++ + S+A S+ T +S P TT ++ P
Sbjct: 2097 SIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTP 2156
Query: 124 GAPQRPP-STGNAGGMLSTTDLTVPNGA----GSSPVGNGFVNSR------ASPNLIGAT 172
G PP T A +T++ P+ A + PV N + +SP+ +
Sbjct: 2157 GTTPIPPVLTTTATTPAATSNTVTPSSALGTTHTPPVPNTMATTHGRSLPPSSPHTVRTA 2216
Query: 173 GANSLGKVMPTKSPPPPG---------------GGNLGMNSRKPDLRVVIPPSSKGMMPP 217
++ ++ T P ++S P R P S G P
Sbjct: 2217 WTSATSGILGTTHITEPSTVTSHTLAATTGTTQHSTPALSSPHPSSRTTESPPSPGTTTP 2276
Query: 218 LNTQRISSSQATQPLATPVVSVTTPSLP 245
+T S + AT ATP + T+ LP
Sbjct: 2277 GHTTATSRTTAT---ATPSKTRTSTLLP 2301
Score = 30.8 bits (68), Expect = 2.5
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 31/186 (16%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSS--LVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAP 126
N+ + P TS A + PG++ L + AA++T T S P T PG
Sbjct: 2970 NYGHCPSTPATSSTATPSSTPGTTWILTEQTTAATTTATTGSTAIPSST-------PGTA 3022
Query: 127 QRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSP 186
P + T+ T P S + + + ++ +T S T
Sbjct: 3023 PPP--------KVLTSTATTPTATSSKATSSSSPRTATTLPVLTSTATKSTA----TSFT 3070
Query: 187 PPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP------LNTQRISSSQATQPLATPVVSVT 240
P P LG P+ + P ++ + P +T + +++AT AT S++
Sbjct: 3071 PIP-SFTLGTTGTLPE-QTTTPMATMSTIHPSSTPETTHTSTVLTTKATTTRATS--SMS 3126
Query: 241 TPSLPP 246
TPS P
Sbjct: 3127 TPSSTP 3132
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 55.1 bits (131), Expect = 1e-07
Identities = 95/378 (25%), Positives = 134/378 (35%), Gaps = 54/378 (14%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTL--TDSSMLSPPQTTL 117
+ PPG PP + P P G + A+S++ + PP TT
Sbjct: 207 QAPPGAPPPH-------PQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTP 259
Query: 118 HRNVSPGA----PQRPPSTGNAGGMLS-----------TTDLTVP------NGAGSSPVG 156
S GA P +PP+T GG L T +L P N A +SP G
Sbjct: 260 ISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPG 319
Query: 157 NGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMP 216
G A P +++G+ M P P G L P + P SS P
Sbjct: 320 LG-----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLA-----PSPHSLPPASSSAPAP 369
Query: 217 PLNTQRISSSQATQPLATPVVSVTTPSLP-PQGLVYSAMPTAYNTDYSLTSADLSALQGF 275
P+ SSS ++ ++ S ++ + P P + P ++ SL+ ++ +
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPK--Y 427
Query: 276 NSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDR 335
P SL + W Q L+A G Q S P+S
Sbjct: 428 TQP---SLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQ--STAHPPVSTHHHH 482
Query: 336 -MTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDRED 394
QQQQQQQQQQQ P PP P G S + + S GS R
Sbjct: 483 HQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPY 542
Query: 395 PRGDFHSPIVLGRPPNTE 412
P G H P PP+++
Sbjct: 543 PPGPAHLP-----PPHSQ 555
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 317 NTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSP 376
N + + SI S P S D + SG Q + PPP P PQPP PRQ
Sbjct: 128 NRSTSPSIYS-PGSVENDSDSSSGLSQGPARPYH--PPPLFPPSPQPPDSTPRQ------ 178
Query: 377 VDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESP 417
+S++ P G +H+P+ PP + ++P
Sbjct: 179 ------PEASFEPHPSVTPTG-YHAPM---EPPTSRMFQAP 209
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 55.1 bits (131), Expect = 1e-07
Identities = 95/378 (25%), Positives = 134/378 (35%), Gaps = 54/378 (14%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTL--TDSSMLSPPQTTL 117
+ PPG PP + P P G + A+S++ + PP TT
Sbjct: 207 QAPPGAPPPH-------PQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTP 259
Query: 118 HRNVSPGA----PQRPPSTGNAGGMLS-----------TTDLTVP------NGAGSSPVG 156
S GA P +PP+T GG L T +L P N A +SP G
Sbjct: 260 ISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPG 319
Query: 157 NGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMP 216
G A P +++G+ M P P G L P + P SS P
Sbjct: 320 LG-----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLA-----PSPHSLPPASSSAPAP 369
Query: 217 PLNTQRISSSQATQPLATPVVSVTTPSLP-PQGLVYSAMPTAYNTDYSLTSADLSALQGF 275
P+ SSS ++ ++ S ++ + P P + P ++ SL+ ++ +
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPK--Y 427
Query: 276 NSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDR 335
P SL + W Q L+A G Q S P+S
Sbjct: 428 TQP---SLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFPPSTGAQ--STAHPPVSTHHHH 482
Query: 336 -MTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDRED 394
QQQQQQQQQQQ P PP P G S + + S GS R
Sbjct: 483 HQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPY 542
Query: 395 PRGDFHSPIVLGRPPNTE 412
P G H P PP+++
Sbjct: 543 PPGPAHLP-----PPHSQ 555
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 317 NTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSP 376
N + + SI S P S D + SG Q + PPP P PQPP PRQ
Sbjct: 128 NRSTSPSIYS-PGSVENDSDSSSGLSQGPARPYH--PPPLFPPSPQPPDSTPRQ------ 178
Query: 377 VDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESP 417
+S++ P G +H+P+ PP + ++P
Sbjct: 179 ------PEASFEPHPSVTPTG-YHAPM---EPPTSRMFQAP 209
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 54.7 bits (130), Expect = 2e-07
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 23/154 (14%)
Query: 226 SQATQPLATPVVSVTTPSLPPQGLVYSAMPTAY---NTDYSLTSADLSALQGFNSPGMLS 282
+Q P++ P SV++ PP G + PT + T+A +A + F S M +
Sbjct: 136 AQVFMPISDPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTFTTATFAATK-FGSTKMKN 194
Query: 283 LGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQ 342
G+ ++++ S +++ N N +K + IS + G
Sbjct: 195 SGR-------------------SNKVARTSPINLGLNVNDLLKQKAISSSMHSLYGLGLG 235
Query: 343 QQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSP 376
QQQ QQQQQP PP P P P Q Q ++ SP
Sbjct: 236 SQQQPQQQQQPAQPPPPPPPPQQQQQQKTSALSP 269
>gi|196114999 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 53.9 bits (128), Expect = 3e-07
Identities = 27/41 (65%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 342 QQQQQQQQQQQPPPPPQPQPQP---PQPQPRQEMGRSPVDS 379
QQQQQQQQQQQ PPPPQPQ QP P+ PRQ SP +S
Sbjct: 597 QQQQQQQQQQQAPPPPQPQQQPQTGPRLPPRQPTVASPAES 637
>gi|4506791 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 53.9 bits (128), Expect = 3e-07
Identities = 27/41 (65%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 342 QQQQQQQQQQQPPPPPQPQPQP---PQPQPRQEMGRSPVDS 379
QQQQQQQQQQQ PPPPQPQ QP P+ PRQ SP +S
Sbjct: 597 QQQQQQQQQQQAPPPPQPQQQPQTGPRLPPRQPTVASPAES 637
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 53.5 bits (127), Expect = 4e-07
Identities = 80/324 (24%), Positives = 114/324 (35%), Gaps = 37/324 (11%)
Query: 63 PGLPPQNFSMSVTVPVTS---PNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHR 119
P N ++S + P+ S A T G+S PS S ++ + H
Sbjct: 389 PAFSMANSALSTSSPIPSVPQSQAQPQTGSGASRALPSWQEVSHAQQLKQIAANRQQ-HA 447
Query: 120 NVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGK 179
+ Q P+ +A +P+ AG SP G SP+ T +
Sbjct: 448 RMQQHQQQHQPTNWSA----------LPSSAGPSPGPFG-QEKIPSPSFGQQTFS----- 491
Query: 180 VMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSV 239
P SP P G G + + PS++G + Q Q L+ ++
Sbjct: 492 --PQSSPMPGVAGGSGQSKVMANYMYKAGPSAQG-----GHLDVLMQQKPQDLSRSFINN 544
Query: 240 TTPSLPP-QGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAA 298
P++ P QG + P + S L N P +L Q QQ Q
Sbjct: 545 PHPAMEPRQG---NTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQQQQQ 601
Query: 299 LSSLVAGGQLSQGSNL-----SINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQP 353
Q Q SI+ Q +S IS + + QQQQQQQQQQQ
Sbjct: 602 QQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSS-ISAQQQQQQQQQQQQQQQQQQQQQQ 660
Query: 354 PPPPQPQPQPPQPQPRQEMGRSPV 377
QP QP Q P Q + RSP+
Sbjct: 661 QQQQQPSSQPAQSLPSQPLLRSPL 684
Score = 38.9 bits (89), Expect = 0.009
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 29/267 (10%)
Query: 124 GAPQ-RPPSTGNAGGM----LSTTDL--TVPNGAGSSPVGNGFVNSRASPNLIGATGANS 176
G+PQ RPPS G A M LST+ +VP G+G SRA P+ + A
Sbjct: 378 GSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGSGA--SRALPSWQEVSHAQQ 435
Query: 177 LGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPV 236
L ++ + + +P +P S+ P ++I S Q +P
Sbjct: 436 LKQIAANRQQHARMQQH--QQQHQPTNWSALPSSAGPSPGPFGQEKIPSPSFGQQTFSP- 492
Query: 237 VSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ 296
S P G+ + + +Y + A SA G L + + L +
Sbjct: 493 -----QSSPMPGVAGGSGQSKVMANY-MYKAGPSAQGGH-------LDVLMQQKPQDLSR 539
Query: 297 AALSSLVAGGQLSQGSNLSI---NTNQ-NISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ 352
+ +++ + QG+ + N++Q N + S S + + QQQQQQQQQQQ
Sbjct: 540 SFINNPHPAMEPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQQQQQQQQQ 599
Query: 353 PPPPPQPQPQPPQPQPRQEMGRSPVDS 379
Q Q Q Q Q +Q+ +S + +
Sbjct: 600 QQQQQQQQQQQQQQQQQQQQQQSSISA 626
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 342 QQQQQQQQQQQPPPPPQPQPQPPQPQPRQ-EMGRSPVDSLSSSSSSYDGS 390
+++ QQQQQQQPP PP P PQPPQPQP P+ +SS +S GS
Sbjct: 246 KKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGS 295
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/27 (81%), Positives = 22/27 (81%)
Query: 342 QQQQQQQQQQQPPPPPQPQPQPPQPQP 368
QQQQQQQQQQQPPPPP P P P PQP
Sbjct: 30 QQQQQQQQQQQPPPPPPPPPPPQLPQP 56
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 323 SIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQE 371
S+KS + + QQQQQQQQQ PPPPP P PQ PQP P+ +
Sbjct: 13 SLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQ 61
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 328 PISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQP------QPPQPQPRQEMGRSPVDSLS 381
P PP P Q Q Q QPPPPP P P + P +P++E+ + D ++
Sbjct: 44 PPPPPPPPQLPQPPPQAQPLLPQPQPPPPPPPPPPGPAVAEEPLHRPKKELSATKKDRVN 103
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 52.4 bits (124), Expect = 8e-07
Identities = 77/330 (23%), Positives = 128/330 (38%), Gaps = 60/330 (18%)
Query: 81 PNALSYTNPGSSLVSPSLAASSTL-TDSSMLSPPQTTLHRNVSPGAPQRP-----PSTGN 134
P+A + +SL++P+ +AS L T + ++ PQT + SP P P PS G
Sbjct: 1560 PSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAP-SPAPPLAPLPVLAPSPG- 1617
Query: 135 AGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPP-PGGGN 193
A +L+++ VP A SS G ++ P +S ++P P P P +
Sbjct: 1618 AAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPAS 1677
Query: 194 LGMNSRKPDLRVVIPPSSKGM---------MPPLNTQRISSSQATQPLATPVVSVT---- 240
+ P L + SS P TQ +S + A+ + TP +++
Sbjct: 1678 TQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPG 1737
Query: 241 -------TPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHH 293
T SL P + A P ++LT A S+ +P + +S
Sbjct: 1738 PPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVPT 1797
Query: 294 LGQAALSSLVAG-----GQLSQGSNLSINTN--------------------QNISIKSEP 328
LG AA +L SQ S+L ++ + ++++S P
Sbjct: 1798 LGPAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTLTLRSGP 1857
Query: 329 ISPPRDRMTPSGFQQQQQQQQQQQPPPPPQ 358
SPP + G + ++QPPPPP+
Sbjct: 1858 PSPPSTATSFGG------PRPRRQPPPPPR 1881
Score = 39.7 bits (91), Expect = 0.005
Identities = 78/358 (21%), Positives = 124/358 (34%), Gaps = 61/358 (17%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNPG--------------SSLVSPSLAASSTLTDSS 108
P P S +T+P+++P +S + P ++ PSLA S +S
Sbjct: 1444 PTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSAS 1503
Query: 109 MLSPPQTTLHRNVSPGAPQRP----PSTGNAGGMLST-----TDLTVPNGAGSSPVGNGF 159
L+ T S P P P++ + G+ ST + + VP A +SP +
Sbjct: 1504 ALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAP 1563
Query: 160 VNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMP--- 216
+ A +L+ + S P P L + P + + S G P
Sbjct: 1564 NPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLA 1623
Query: 217 ----PLNTQRISSSQATQPLATPVVSVTTPSLPPQGL-------VYSAMPTAYNTDYSLT 265
P+ SS+ T + V TP L P V S +P+ +T
Sbjct: 1624 SSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLAL 1683
Query: 266 SADLSALQGFNSPGM-LSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISI 324
+ L+ G +SP LSLG + Q LS L+ S+L Q +S+
Sbjct: 1684 APALAPTLGGSSPSQTLSLGTGNP--QGPFPTQTLS-------LTPASSLVPTPAQTLSL 1734
Query: 325 KSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSS 382
P P ++ + P PP P P P + +P S +S
Sbjct: 1735 APGPPLGPTQTLSLA--------------PAPPLAPASPVGPAPAHTLTLAPASSSAS 1778
Score = 39.3 bits (90), Expect = 0.007
Identities = 83/329 (25%), Positives = 110/329 (33%), Gaps = 63/329 (19%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNP---GSSLVSPSLAASSTLTDSSMLSPPQTTLHR 119
PG P S + VP + P S P S L SP + S SS+ TTL
Sbjct: 1390 PGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPA 1449
Query: 120 NVSPGA--PQRPPSTGNAGGMLSTTDLT------VPNGAGSSPVGNGFVNSRASPNLIGA 171
S P P T +A G T +T VP G + + AS +G
Sbjct: 1450 PASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGL 1509
Query: 172 TGANSLGKVMPTKSP---PPPGGGNLGMNSRKPDL--RVVIP--------PSSKGMMPPL 218
A SL P P G+NS V++P PS+ P
Sbjct: 1510 ATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQ 1569
Query: 219 NTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSP 278
+ +S A+Q LATP+ P PQ + + P A L L SP
Sbjct: 1570 ASLLAPASSASQALATPL----APMAAPQTAILAPSPAP-------PLAPLPVLA--PSP 1616
Query: 279 GMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTP 338
G V A Q + A SS + G++L+ + P+ P + P
Sbjct: 1617 G---AAPVLASSQTPVPVMAPSS-------TPGTSLA---------SASPVPAPTPVLAP 1657
Query: 339 SGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 367
S Q P P P P P P Q
Sbjct: 1658 S-------STQTMLPAPVPSPLPSPASTQ 1679
Score = 38.5 bits (88), Expect = 0.012
Identities = 78/351 (22%), Positives = 117/351 (33%), Gaps = 74/351 (21%)
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
GPP +P V +P PN+ S P + S S PP TL
Sbjct: 1057 GPPLIPASRPPGPVLLPPLQPNSGSL---------PQVLPSPLGVLSGTSRPPTPTLSLK 1107
Query: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
+P AP R G LTVP G P A+ T A +
Sbjct: 1108 PTPPAPVRLSPAPPPGSSSLLKPLTVPPGYTFPP---------AAATTTSTTTATATTTA 1158
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPS---SKGMMPPLNTQRISSSQATQPLATPVV 237
+P +P P PD++ +P S G + L + ++++ ++PL +
Sbjct: 1159 VPAPTPAPQ------RLILSPDMQARLPSGEVVSIGQLASLAQRPVANAGGSKPLTFQI- 1211
Query: 238 SVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLS---LGQVSAWQQHHL 294
QG +LT A + L P L + VSA QHHL
Sbjct: 1212 ---------QG-----------NKLTLTGAQVRQL-AVGQPRPLQRNVVHLVSAGGQHHL 1250
Query: 295 -GQAALSSLVAGGQLSQG------------SNLSINTNQNISIKSEPISPPRDRMTPS-G 340
Q A +L+ + G S T ++ + + + P T
Sbjct: 1251 ISQPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVPPTMVNNTGVVK 1310
Query: 341 FQQQQQQQQQQQPPPPPQPQPQPPQ--------PQPRQEMGRSPVDSLSSS 383
+Q + P PP P P+PP P+P GR P +L ++
Sbjct: 1311 IVVRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTA 1361
Score = 34.7 bits (78), Expect = 0.17
Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 30/203 (14%)
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSM----LSP-PQT 115
GPP P Q S++ P+ + + + ++P+ +++S L +S+ LSP P
Sbjct: 1737 GPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVP 1796
Query: 116 TLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVN----SRASPNLI-- 169
TL + P ST + S+ V + +G++P+ V+ S+ P+ +
Sbjct: 1797 TLGPAAAQTLALAPASTQSPASQASS---LVVSASGAAPLPVTMVSRLPVSKDEPDTLTL 1853
Query: 170 ------GATGANSLGKVMPTKSPPPPGGGNLGMNS--------RKPDLRVVIPPSSK--G 213
+ A S G P + PPPP ++S R L + S
Sbjct: 1854 RSGPPSPPSTATSFGGPRPRRQPPPPPRSPFYLDSLEEKRKRQRSERLERIFQLSEAHGA 1913
Query: 214 MMPPLNTQRISSSQATQPLATPV 236
+ P T+ + QP+A+P+
Sbjct: 1914 LAPVYGTEVLDFCTLPQPVASPI 1936
Score = 30.8 bits (68), Expect = 2.5
Identities = 85/356 (23%), Positives = 123/356 (34%), Gaps = 75/356 (21%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNP-GSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 121
PG P + S T P T+P + P ++ V P++ ++ + + P+ L V
Sbjct: 1267 PGPTPVSVLPSST-PSTTPAPTGLSLPLAANQVPPTMVNNTGVVKIVVRQAPRDGL-TPV 1324
Query: 122 SPGAPQ-RPPSTG-----NAGGMLSTTDLTVPN-GAGSSPVGNG--------FVNSRASP 166
P AP RPPS+G N L+ L P G +P+ V+S +
Sbjct: 1325 PPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVRPLLKLVHSPSPE 1384
Query: 167 NLIGATGANSLGKVMPTKSP---PPPGGGNLGMNSRKPDLRVVIPPSSKGMMP-----PL 218
A GA L P P P P + + + P + P SS +P P+
Sbjct: 1385 VSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSP---LASPVSSTVSVPLSSSLPI 1441
Query: 219 NTQRISSSQATQPLATPV-----VSVTTPSL-----PPQGLVYSAMPTAYNTDYSLTSAD 268
+ + A+ PL P+ VS + P+L PP V A P + S S
Sbjct: 1442 SVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPS 1501
Query: 269 LSALQ-GFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSE 327
SAL G + LS Q H L A SS V G N ++
Sbjct: 1502 ASALTLGLATAPSLSSSQTPG---HPLLLAPTSSHVPG------------LNSTVAPACS 1546
Query: 328 PISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSS 383
P+ P + P P P P P Q +P S S +
Sbjct: 1547 PVLVPASALA--------------------SPFPSAPNPAPAQASLLAPASSASQA 1582
Score = 29.6 bits (65), Expect = 5.5
Identities = 48/215 (22%), Positives = 76/215 (35%), Gaps = 36/215 (16%)
Query: 11 IMDERNRQTLRKKGLNGCESPDADDYFEHSPLSED------RFSKLNEDSDFIFKRGPPG 64
++D + L GL P E S ED R ++L +++ + R G
Sbjct: 3024 VLDRDSTSVLESCGLGRRRQPQGQGESEGSSSDEDGSRPLTRLARLRLEAEGMRGRKSGG 3083
Query: 65 LPPQNFSMSVTV-------PVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTL 117
SM V V + P L T P SL +P L S+ L S++ P +T
Sbjct: 3084 ------SMVVAVIQDDLDLADSGPGGLELTPPVVSL-TPKLR-STRLRPGSLVPPLETEK 3135
Query: 118 HRNVSPGAPQ------------RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRAS 165
GAP +PPS G + ++ +G G+G R
Sbjct: 3136 LPRKRAGAPVGGSPGLAKRGRLQPPSPLGPEGSVEESEA---EASGEEEEGDGTPRRRPG 3192
Query: 166 PNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRK 200
P + T +++ + +PP G + RK
Sbjct: 3193 PRRLVGTTNQGDQRILRSSAPPSLAGPAVSHRGRK 3227
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 50.4 bits (119), Expect = 3e-06
Identities = 79/311 (25%), Positives = 109/311 (35%), Gaps = 39/311 (12%)
Query: 89 PGSSLVSPSLAASSTLTDSSMLSP-----PQTTLHRNVSPGAPQRPPSTGNAGGML---- 139
P L P A S + P PQT +P Q +TG + +L
Sbjct: 2520 PPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQAPAKAQPAITTGGSAAVLAGTI 2579
Query: 140 --STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN 197
S T ++P GA S GN VN+ A + A S+ K + SP PG
Sbjct: 2580 KTSVTGTSMPTGAVS---GNVIVNTIAG---VPAATFQSINKRLA--SPVAPGALTTPGG 2631
Query: 198 SRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTA 257
S + PP P T + S TQ + V SVT ++ L T
Sbjct: 2632 SAPAQVVHTQPPPRAVGSPATATPDLVSMATTQGVRA-VTSVTASAVVTTNL------TP 2684
Query: 258 YNTDYSLTSADLSALQGFNSPG--------MLSLGQVSAWQQHHLGQAALSSLVAGGQLS 309
T +S G PG L Q QQ Q Q
Sbjct: 2685 VQTPARSLVPQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQQQQQQQQQQQQQQQ 2744
Query: 310 QGSNLSINTNQNISIKSEPISPPR----DRMTPSGFQQQQQQQQQQQP-PPPPQPQPQPP 364
Q + + Q I+ + SP + ++TP + Q+Q+ Q P PPPPQ Q PP
Sbjct: 2745 QQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQMPPQPPPPQAQSAPP 2804
Query: 365 QPQPRQEMGRS 375
QP + ++ S
Sbjct: 2805 QPTAQVQVQTS 2815
Score = 40.0 bits (92), Expect = 0.004
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 320 QNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 368
Q S+++E I+ + + QQ+ QQ PPPPQPQP PP QP
Sbjct: 2476 QVASLRAERIAKEKKALA----DQQKAQQPAVAQPPPPQPQPPPPPQQP 2520
Score = 32.7 bits (73), Expect = 0.65
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 327 EPISPPRDRMTPSGFQQQQQQQQQQQPPPPP-QPQPQP-PQPQPR 369
+P PP + P Q Q Q PP QPQPQP PQ QP+
Sbjct: 2510 QPQPPPPPQQPPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQ 2554
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 50.4 bits (119), Expect = 3e-06
Identities = 102/418 (24%), Positives = 153/418 (36%), Gaps = 64/418 (15%)
Query: 43 SEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTN-----PGSSLVSPS 97
S R + ++ + R P N + S T +P +L+ G++L SP
Sbjct: 2325 SSSRTPQAPASANLVGPRSAHATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSPR 2384
Query: 98 LAASSTLTDSSMLSPPQTTLHRN-VSPGAP-------QRPPSTGNAGGMLSTTDLTVP-N 148
+ S+ S SPP R+ P AP +R PS + G + L P
Sbjct: 2385 VPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQ 2444
Query: 149 GAGSSPVGNGFVNSRASPNLIGAT----GANSL--GKVMPTKSPPPPGGGNLGMNSRK-P 201
SPV + F S S LI T G+ SL G V T S G L + + P
Sbjct: 2445 DQPRSPVPSAF--SDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVP 2502
Query: 202 DLRVVIPPSSKGM--------MPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYS- 252
V PP+S G + P +R SSS ++ ++ S ++ S G S
Sbjct: 2503 HSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD 2562
Query: 253 ----AMPT----AYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVA 304
++P A S T A A++ P + ++ SS +
Sbjct: 2563 SEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSS 2622
Query: 305 GGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPP 364
S S+ S +++ + S S SP + P Q P P +PP
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGP-------------QALPKPASPKKPP 2669
Query: 365 QPQPRQEMGRSPVDSLSSSSS-SYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKR 421
+ R R P+DSL S S SY +R P SP P+ D++S S +R
Sbjct: 2670 PGERRSRSPRKPIDSLRDSRSLSYSPVERRRP-----SP-----QPSPRDQQSSSSER 2717
Score = 45.1 bits (105), Expect = 1e-04
Identities = 89/379 (23%), Positives = 141/379 (37%), Gaps = 73/379 (19%)
Query: 60 RGPPGLPPQNFSMSVT-VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLH 118
R PP + + ++ VP P T P ++L S AAS+ + + P
Sbjct: 2194 RPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTPAIPTA 2253
Query: 119 RNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLG 178
N+ A R P+ A + S P+ + + + + NL GA +L
Sbjct: 2254 VNL---ADSRTPAAAAAMNLASPRTAVAPSAVN---LADPRTPTAPAVNLAGARTPAALA 2307
Query: 179 KVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVS 238
+ T S PP N +SR P P+S ++ P S+ AT P+ S
Sbjct: 2308 ALSLTGSGTPPTAANYPSSSRTPQ-----APASANLVGP------RSAHATAPV-NIAGS 2355
Query: 239 VTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAA 298
T +L P L + M A L+ A+L+ SP + +SA+++
Sbjct: 2356 RTAAALAPASLTSARMAPA------LSGANLT------SPRV----PLSAYER------- 2392
Query: 299 LSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMT----PSGFQQQQQQQQQQQPP 354
+S + L + + ++ P +P + RMT PS + Q Q
Sbjct: 2393 VSGRTSPPLLDRARS-----------RTPPSAPSQSRMTSERAPSP-SSRMGQAPSQSLL 2440
Query: 355 PPPQPQPQPPQPQPRQEMGR------SPV---DSLSSSSSSYDGSDREDPRGDFHSPIV- 404
PP Q QP+ P P + R +PV SLSS + + S D G P
Sbjct: 2441 PPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPG 2500
Query: 405 -----LGRPPNTEDRESPS 418
+G PP + + PS
Sbjct: 2501 VPHSDVGEPPASTGAQQPS 2519
Score = 39.3 bits (90), Expect = 0.007
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 324 IKSEPISPP------RDRMTPSGFQQQQQQQQQQQPPPPPQP---------QPQPPQPQP 368
+ EP++PP RDR P ++ Q + PP PQP P+ P+P P
Sbjct: 386 LSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAP 445
Query: 369 RQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSP 402
R S +S + S+ + R+ + H+P
Sbjct: 446 APGSHREISSSPTSKNRSHGRAKRD--KSHSHTP 477
Score = 37.4 bits (85), Expect = 0.026
Identities = 74/347 (21%), Positives = 125/347 (36%), Gaps = 32/347 (9%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL-----AASSTLTDSSMLSPPQ 114
R PP P Q+ S P SP++ P SL+ P+ S +D S Q
Sbjct: 2408 RTPPSAPSQSRMTSERAP--SPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQ 2465
Query: 115 TTL---HRNVSPGAPQRPPST-GNAGGMLSTTDLTVPNG-AGSSPVGNGFVNSRASPNLI 169
TT +++S GA S+ G+ GMLS VP+ G P G A L
Sbjct: 2466 TTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQ 2525
Query: 170 GA---------TGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNT 220
A + ++S + S G+ +S L V + K + P
Sbjct: 2526 PAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPA 2585
Query: 221 QRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGM 280
+ + + P TP S S+ ++ ++ S +S+ S+ +S
Sbjct: 2586 PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2645
Query: 281 LSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNL----SINTNQNISI------KSEPIS 330
S + L + A G+ S S+ ++++S + P
Sbjct: 2646 SSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQP 2705
Query: 331 PPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP-RQEMGRSP 376
PRD+ + S + ++ Q+ P + + + P P+P R RSP
Sbjct: 2706 SPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHRSSRSP 2752
Score = 35.4 bits (80), Expect = 0.10
Identities = 77/344 (22%), Positives = 120/344 (34%), Gaps = 33/344 (9%)
Query: 95 SPSLAASST--LTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGS 152
SP SST S S PQ + +SP QR S ++ T T P + S
Sbjct: 895 SPPRVKSSTPPRQSPSRSSSPQPKVKAIISPR--QRSHSGSSSPSPSRVTSRTTPRRSRS 952
Query: 153 -SPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPP-- 209
SP N V SR P + ++ KV P PP + G S P ++ PP
Sbjct: 953 VSPCSN--VESRLLPRYSHSGSSSPDTKVKPET---PPRQSHSGSISPYPKVKAQTPPGP 1007
Query: 210 SSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADL 269
S G P ++ S + + S P G Y + + S TS D
Sbjct: 1008 SLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQTSPDH 1067
Query: 270 SA--------LQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAG-------GQLSQGSNL 314
+ SP + S Q S + ++ L + G+ S L
Sbjct: 1068 RSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEFSASPML 1127
Query: 315 SINTNQNIS-IKSEPISPPR-DRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEM 372
+ S +S+ S P D + G + + + +++ PPQ P+ + +
Sbjct: 1128 KSGMSPEQSRFQSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDATASPPRQKDKF 1187
Query: 373 GRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRES 416
PV SS + + R PR + G P T+++ S
Sbjct: 1188 SPFPVQDRPESSLVFKDTLRTPPRERSGA----GSSPETKEQNS 1227
Score = 33.5 bits (75), Expect = 0.38
Identities = 54/217 (24%), Positives = 80/217 (36%), Gaps = 22/217 (10%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHR 119
R PP + ++ S S + S + N S P SS ++ S S T L R
Sbjct: 2070 RSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDR 2129
Query: 120 NVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAG---SSPVGNGFVNSRASPNLIGATGANS 176
SPG + S+ +L ++ +G G + A + A A S
Sbjct: 2130 CRSPGMLEPLGSSRTPMSVLQQAGGSMMDGPGPRIPDHQRTSVPENHAQSRIALALTAIS 2189
Query: 177 LGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLN-TQRISSSQATQPLATP 235
LG + PPP G+ +R + +P S P N RI ++ A A
Sbjct: 2190 LG-----TARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAA---AMN 2241
Query: 236 VVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSAL 272
+ S TP A+PTA N S T A +A+
Sbjct: 2242 LASARTP----------AIPTAVNLADSRTPAAAAAM 2268
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 77 PVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTL--HRNVSPGAPQRPPSTGN 134
PV P+ S T S SP S+ ++SS SP T + H + SP +P+ P+ G+
Sbjct: 390 PVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGS 449
Score = 30.8 bits (68), Expect = 2.5
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 323 SIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSS 382
S +S P PP+ R G + + + + + PP + P+ + + R S
Sbjct: 1654 STESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRS----RS 1709
Query: 383 SSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRES 416
+SSS + R PR SP V P + R S
Sbjct: 1710 ASSSPETRSRTPPR-HRRSPSVSSPEPAEKSRSS 1742
Score = 30.4 bits (67), Expect = 3.2
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 265 TSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQG----SNLSINTNQ 320
TSAD ++ +S S + +A + H A S A G+ +G S + Q
Sbjct: 264 TSADSAS----SSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQ 319
Query: 321 NIS----IKSEPISP----PRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQ-------PPQ 365
S +P SP +D+ S + ++ P PP P P PQ
Sbjct: 320 RPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQ 379
Query: 366 PQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 412
P + + PV+ S +S + D S + P S PP+ +
Sbjct: 380 PLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQ 426
>gi|110347429 mediator complex subunit 12 [Homo sapiens]
Length = 2177
Score = 50.1 bits (118), Expect = 4e-06
Identities = 97/407 (23%), Positives = 137/407 (33%), Gaps = 69/407 (16%)
Query: 13 DERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSM 72
+E TL + E P D P +E+R K + KR P +++ M
Sbjct: 1749 EEPPAPTLLEPEKKAPEPPKTDKPGAAPPSTEERKKKSTKGK----KRSQPATKTEDYGM 1804
Query: 73 S--------VTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP---PQTTLHRNV 121
VTVP P+ L + NPGS S L + P P+ +R V
Sbjct: 1805 GPGRSGPYGVTVP---PDLLHHPNPGSITHLNYRQGSIGLYTQNQPLPAGGPRVDPYRPV 1861
Query: 122 SPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSS-----------PVGNGFVNSRASPNLIG 170
Q+ P+ G+L TT V SS V G + G
Sbjct: 1862 RLPM-QKLPTRPTYPGVLPTTMTGVMGLEPSSYKTSVYRQQQPAVPQGQRLRQQLQQSQG 1920
Query: 171 ATGANSLGKVMPTKSPP-------PPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRI 223
G +S+ ++ P+ S P ++G+ ++PPS
Sbjct: 1921 MLGQSSVHQMTPSSSYGLQTSQGYTPYVSHVGLQQHTGPAGTMVPPSYSSQ--------- 1971
Query: 224 SSSQATQPLATPVVSVTTPSLP--PQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGML 281
Q+T P P + T L P G V+ PT + LTS + Q M+
Sbjct: 1972 -PYQSTHPSTNPTLVDPTRHLQQRPSGYVHQQAPTY---GHGLTSTQRFSHQTLQQTPMI 2027
Query: 282 S-LGQVSAW----------------QQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISI 324
S + +SA QQ Q Q Q I Q I
Sbjct: 2028 STMTPMSAQGVQAGVRSTAILPEQQQQQQQQQQQQQQQQQQQQQQQQQQYHIRQQQQQQI 2087
Query: 325 KSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQE 371
+ + + QQQQQQQQQQQ Q Q PPQPQP+ +
Sbjct: 2088 LRQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQQAAPPQPQPQSQ 2134
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 49.7 bits (117), Expect = 5e-06
Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 32/235 (13%)
Query: 67 PQNFSMSVTVP-VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGA 125
PQ+ + + P T+P S + P + +P +++T S +PP+TT A
Sbjct: 162 PQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETT-------AA 214
Query: 126 PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMP--- 182
P PP+T A P + + P + A+P AT L P
Sbjct: 215 PPTPPATTPA-----------PPSSSAPP------ETTAAPPTPSATTPAPLSSSAPPET 257
Query: 183 TKSPPPPGGGNLGMNSRK-PDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTT 241
T PP P L +S P PP+ P + P+ TP S TT
Sbjct: 258 TAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTT 317
Query: 242 PSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ 296
L P SA PT + T S+T+ + Q ++PG + + + ++ L +
Sbjct: 318 --LAPDTSETSAAPT-HQTTTSVTTQTTTTKQPTSAPGQNKISRFLLYMKNLLNR 369
Score = 41.2 bits (95), Expect = 0.002
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 66 PPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGA 125
PP+ + T T+P LS + P + P +++TL SS +PP+TT +P A
Sbjct: 231 PPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA-APPTPSA 289
Query: 126 PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKS 185
P + A + +T PN SSP S S T + + TK
Sbjct: 290 TTPAPPSSPAPQETTAAPITTPN---SSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQ 346
Query: 186 PPPPGGGN 193
P G N
Sbjct: 347 PTSAPGQN 354
Score = 34.7 bits (78), Expect = 0.17
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 60 RGPPG--LPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTL 117
+ PP PP+ + T P T+P S + P + +P +++T S +PP+TT
Sbjct: 200 QAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTA 259
Query: 118 ------HRNVSPGAPQRPPSTGNAGGMLSTTDLTVPN 148
+ P + PP T A S T P+
Sbjct: 260 VPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 49.7 bits (117), Expect = 5e-06
Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 32/235 (13%)
Query: 67 PQNFSMSVTVP-VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGA 125
PQ+ + + P T+P S + P + +P +++T S +PP+TT A
Sbjct: 162 PQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETT-------AA 214
Query: 126 PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMP--- 182
P PP+T A P + + P + A+P AT L P
Sbjct: 215 PPTPPATTPA-----------PPSSSAPP------ETTAAPPTPSATTPAPLSSSAPPET 257
Query: 183 TKSPPPPGGGNLGMNSRK-PDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTT 241
T PP P L +S P PP+ P + P+ TP S TT
Sbjct: 258 TAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTT 317
Query: 242 PSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ 296
L P SA PT + T S+T+ + Q ++PG + + + ++ L +
Sbjct: 318 --LAPDTSETSAAPT-HQTTTSVTTQTTTTKQPTSAPGQNKISRFLLYMKNLLNR 369
Score = 41.2 bits (95), Expect = 0.002
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 66 PPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGA 125
PP+ + T T+P LS + P + P +++TL SS +PP+TT +P A
Sbjct: 231 PPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA-APPTPSA 289
Query: 126 PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKS 185
P + A + +T PN SSP S S T + + TK
Sbjct: 290 TTPAPPSSPAPQETTAAPITTPN---SSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQ 346
Query: 186 PPPPGGGN 193
P G N
Sbjct: 347 PTSAPGQN 354
Score = 34.7 bits (78), Expect = 0.17
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 60 RGPPG--LPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTL 117
+ PP PP+ + T P T+P S + P + +P +++T S +PP+TT
Sbjct: 200 QAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTA 259
Query: 118 ------HRNVSPGAPQRPPSTGNAGGMLSTTDLTVPN 148
+ P + PP T A S T P+
Sbjct: 260 VPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 49.7 bits (117), Expect = 5e-06
Identities = 57/235 (24%), Positives = 90/235 (38%), Gaps = 32/235 (13%)
Query: 67 PQNFSMSVTVP-VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGA 125
PQ+ + + P T+P S + P + +P +++T S +PP+TT A
Sbjct: 162 PQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETT-------AA 214
Query: 126 PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMP--- 182
P PP+T A P + + P + A+P AT L P
Sbjct: 215 PPTPPATTPA-----------PPSSSAPP------ETTAAPPTPSATTPAPLSSSAPPET 257
Query: 183 TKSPPPPGGGNLGMNSRK-PDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTT 241
T PP P L +S P PP+ P + P+ TP S TT
Sbjct: 258 TAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTT 317
Query: 242 PSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ 296
L P SA PT + T S+T+ + Q ++PG + + + ++ L +
Sbjct: 318 --LAPDTSETSAAPT-HQTTTSVTTQTTTTKQPTSAPGQNKISRFLLYMKNLLNR 369
Score = 41.2 bits (95), Expect = 0.002
Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 66 PPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGA 125
PP+ + T T+P LS + P + P +++TL SS +PP+TT +P A
Sbjct: 231 PPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA-APPTPSA 289
Query: 126 PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKS 185
P + A + +T PN SSP S S T + + TK
Sbjct: 290 TTPAPPSSPAPQETTAAPITTPN---SSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQ 346
Query: 186 PPPPGGGN 193
P G N
Sbjct: 347 PTSAPGQN 354
Score = 34.7 bits (78), Expect = 0.17
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 60 RGPPG--LPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTL 117
+ PP PP+ + T P T+P S + P + +P +++T S +PP+TT
Sbjct: 200 QAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTA 259
Query: 118 ------HRNVSPGAPQRPPSTGNAGGMLSTTDLTVPN 148
+ P + PP T A S T P+
Sbjct: 260 VPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 49.3 bits (116), Expect = 7e-06
Identities = 76/308 (24%), Positives = 114/308 (37%), Gaps = 59/308 (19%)
Query: 152 SSPVGNGFVNS--RASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPP 209
SSP+ V S A+P L+ A K S P P G GM +P L+ P
Sbjct: 2062 SSPLQQQQVLSILHANPQLLAAFIKQRAAKY--ANSNPQPIPGQPGMPQGQPGLQPPTMP 2119
Query: 210 SSKGM-----MPPLNTQRISSSQATQPLATPVVSVTTP--SLPPQG----LVYSAMPTAY 258
+G+ M +N + +A P P + P + PQ + ++ MP+ +
Sbjct: 2120 GQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMGGMSPQAQQMNMNHNTMPSQF 2179
Query: 259 NT----DYSLTSADLSALQGFNSPGMLSLGQVSAWQ------------QHHLGQAALSSL 302
+ PGM + Q Q QHH+ Q ++
Sbjct: 2180 RDILRRQQMMQQQQQQGAGPGIGPGMANHNQFQQPQGVGYPPQQQQRMQHHMQQMQQGNM 2239
Query: 303 VAGGQLSQG----SNLSINTNQNISIKSE---PISP----PRDRMTPSGFQQQQQQQQQ- 350
GQL Q + S+ Q ++ + P+ P P+ M P+ Q Q QQ
Sbjct: 2240 GQIGQLPQALGAEAGASLQAYQQRLLQQQMGSPVQPNPMSPQQHMLPNQAQSPHLQGQQI 2299
Query: 351 ----------QQPPPPPQPQPQPP--QPQPRQEMGRSPVDSLSSSSSSYDG--SDREDP- 395
QP P P+PQ QPP P PR + SP +SS + G + + +P
Sbjct: 2300 PNSLSNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPSPHHVSPQTSSPHPGLVAAQANPM 2359
Query: 396 -RGDFHSP 402
+G F SP
Sbjct: 2360 EQGHFASP 2367
Score = 34.3 bits (77), Expect = 0.22
Identities = 62/308 (20%), Positives = 109/308 (35%), Gaps = 28/308 (9%)
Query: 95 SPSLAASSTLTDSSMLSPPQTTLHRNVSPGAP-QRPPSTGNAGGMLSTTDLTVPNGAGSS 153
+P L L L+PP R P Q P T ++ T++ + +G +
Sbjct: 730 TPPLQHHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMNVTNIPLAPSSGQA 789
Query: 154 PVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIP---PS 210
PV ++S + P S G + P P L NS P +P P+
Sbjct: 790 PVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPA---LHQNSPSP-----VPSRTPT 841
Query: 211 SKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLS 270
P + Q+ ++ P+ TP P++PP + P T T+
Sbjct: 842 PHHTPPSIGAQQPPATTIPAPVPTP------PAMPPGPQSQALHPPPRQTPTPPTTQLPQ 895
Query: 271 ALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAG--GQLSQGSNLSINTNQNISIKSEP 328
+Q P + + QQ Q + ++ V L + + +SI+ +
Sbjct: 896 QVQ----PSLPAAPSADQPQQQPRSQQSTAASVPTPTAPLLPPQPATPLSQPAVSIEGQV 951
Query: 329 ISPPRDRMTPSGFQ---QQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSS 385
+PP T Q ++Q Q+ + QP+P QP +++ S V+ S+
Sbjct: 952 SNPPSTSSTEVNSQAIAEKQPSQEVKMEAKMEVDQPEPADTQP-EDISESKVEDCKMEST 1010
Query: 386 SYDGSDRE 393
+ E
Sbjct: 1011 ETEERSTE 1018
Score = 32.7 bits (73), Expect = 0.65
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 328 PISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 368
P P TP+G QQ Q P P QPQP PP P
Sbjct: 1848 PSPTPATPTTPTG----QQPTTPQTPQPTSQPQPTPPNSMP 1884
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 49.3 bits (116), Expect = 7e-06
Identities = 80/364 (21%), Positives = 135/364 (37%), Gaps = 43/364 (11%)
Query: 65 LPPQNFSMSVTVPVTSPNAL-SYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSP 123
+ P S++ T P SP + S T+P + ++++LT + TL R
Sbjct: 168 MTPSTASLTRTPPRASPTGMPSRTSP------TGMPSTASLTKMDSTASITRTLSRASPT 221
Query: 124 GAPQRPPSTGNAG----GMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGK 179
G P R TG+ M+ +T L + +SP G + SR S + +T + +
Sbjct: 222 GTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTG---MLSRTSLTKMDSTASITRTP 278
Query: 180 VMPTKSPPP--PGGGNLGMNSRKPDLRVVIPPSSK-GMMPPLNTQRISSSQATQPLATPV 236
P+ + P P +L M L ++P +S GM+ + ++ S+ A+ P
Sbjct: 279 SRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDST-ASISRTPPR 337
Query: 237 VSVT-TPS-LPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHL 294
S+T TPS P G +A PT + S T SP SL +S
Sbjct: 338 ASITRTPSRASPTGKPSTASPTGTPSRASPTG----------SPSTASLTGLS------- 380
Query: 295 GQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPP 354
S+ G + S + +++ K P + P ++ + + + P
Sbjct: 381 -----STASPTGTPPRASPTGTPSTASLTRKP-PRASPTGMLSRTSITKMDSTASPTRTP 434
Query: 355 PPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDR 414
P P PP+ P R+ S++S P G + G P
Sbjct: 435 PRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLT 494
Query: 415 ESPS 418
+PS
Sbjct: 495 RTPS 498
Score = 33.5 bits (75), Expect = 0.38
Identities = 59/216 (27%), Positives = 76/216 (35%), Gaps = 30/216 (13%)
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGS--SLVSPSLAASSTLTDS--------SML 110
G P S S P SP+ S T S SL AS T T S S
Sbjct: 468 GSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTA 527
Query: 111 SP---PQTTLHR-NVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASP 166
SP P T L + S A R PS + S LT P+ A + + + +R P
Sbjct: 528 SPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPP 587
Query: 167 NLIGATGANSLGKVMPTKSPPP--PGGGNLGMNSRKPDLRVVIPPSSKGMMP----PLNT 220
+ TG MP+++ P P L + P +S P P T
Sbjct: 588 S-ASPTG-------MPSRTSPTGMPSSALLTKMDSTASITRTPPRASPTETPPRASPTGT 639
Query: 221 QRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPT 256
+S T P A+P + T P P G A PT
Sbjct: 640 PPRASPTGTPPRASP--TGTPPRASPTGTPSRASPT 673
Score = 30.8 bits (68), Expect = 2.5
Identities = 51/213 (23%), Positives = 75/213 (35%), Gaps = 30/213 (14%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVS 122
P P S + T P SP + S + S T S SP + + S
Sbjct: 430 PTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPS 489
Query: 123 PGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMP 182
+ R PS + M ST +T +P SRASP +T + P
Sbjct: 490 RASLTRTPSRASLTKMESTASIT------RTP-------SRASPTWTPSTAS-------P 529
Query: 183 TKSPPPP---GGGNLGMNSRKPD-LRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVS 238
T SP G + +R P + PS + P S + T+ +T +++
Sbjct: 530 TGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTP------SRASLTRTPSTVLLT 583
Query: 239 VTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSA 271
PS P G+ PT + LT D +A
Sbjct: 584 RMPPSASPTGMPSRTSPTGMPSSALLTKMDSTA 616
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 48.9 bits (115), Expect = 9e-06
Identities = 44/195 (22%), Positives = 73/195 (37%), Gaps = 12/195 (6%)
Query: 65 LPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPG 124
LPP T T+P + +P ++ +++TL ++ SPP TT
Sbjct: 1517 LPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTT 1576
Query: 125 APQRPPSTGNAGGMLSTTD---LTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVM 181
P P +T + ++TT T P+ ++ + + P T S +
Sbjct: 1577 TPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLP 1636
Query: 182 PTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTT 241
PT +P PP + P PP++ PP+ T + P TP +TT
Sbjct: 1637 PTTTPSPPPT----TTTTPPPTTTPSPPTTTTPSPPITT-----TTTPPPTTTPSSPITT 1687
Query: 242 PSLPPQGLVYSAMPT 256
PP + + PT
Sbjct: 1688 TPSPPTTTMTTPSPT 1702
Score = 46.6 bits (109), Expect = 4e-05
Identities = 44/189 (23%), Positives = 65/189 (34%), Gaps = 13/189 (6%)
Query: 62 PPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP-PQTTLHRN 120
P P S + T P T+ + T P +PS ++T T +P P TT
Sbjct: 1450 PTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPIT 1509
Query: 121 VSPGAPQRPPSTGNAGGMLSTT---DLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSL 177
PP+T + +TT T P+ ++P+ + P + +
Sbjct: 1510 PPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTT 1569
Query: 178 GKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVV 237
PT +P PP P + PP + PP T + P TP
Sbjct: 1570 TTPPPTTTPSPP----TTTTPSPPTITTTTPPPTTTPSPPTTT-----TTTPPPTTTPSP 1620
Query: 238 SVTTPSLPP 246
TTP PP
Sbjct: 1621 PTTTPITPP 1629
Score = 46.2 bits (108), Expect = 6e-05
Identities = 52/202 (25%), Positives = 74/202 (36%), Gaps = 26/202 (12%)
Query: 62 PPGLPPQNFSMSVTVP--VTSPN---ALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTT 116
PP P + + T P T+P+ + T P ++ SP ++ ++T ++ SPP TT
Sbjct: 1417 PPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPPPTTTPSPPTTT 1476
Query: 117 LHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANS 176
P P PS +TT T P SP + AS + T S
Sbjct: 1477 ------PSPPTTTPSPP------TTTTTTPPPTTTPSPPTTTPITPPASTTTLPPTTTPS 1524
Query: 177 LGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQAT--QPLAT 234
T +PPP P + PP+S +PP T + T P T
Sbjct: 1525 -PPTTTTTTPPPT------TTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTT 1577
Query: 235 PVVSVTTPSLPPQGLVYSAMPT 256
P TT PP + PT
Sbjct: 1578 PSPPTTTTPSPPTITTTTPPPT 1599
Score = 45.4 bits (106), Expect = 1e-04
Identities = 48/211 (22%), Positives = 76/211 (36%), Gaps = 14/211 (6%)
Query: 62 PPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 121
PP P S T P+T P + + T P ++ SP ++T ++ SPP TT
Sbjct: 1534 PPTTTP---SPPTTTPITPPTSTT-TLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPP 1589
Query: 122 SPGAPQRPPSTGNAGGMLSTTD---LTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLG 178
+ PP+T + +TT T P+ ++P+ + P + +
Sbjct: 1590 TITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTT 1649
Query: 179 KVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQR---ISSSQATQPLATP 235
PT +P PP P PP + P+ T ++ P TP
Sbjct: 1650 TPPPTTTPSPP----TTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTP 1705
Query: 236 VVSVTTPSLPPQGLVYSAMPTAYNTDYSLTS 266
+TT + P S PT T T+
Sbjct: 1706 SSPITTTTTPSSTTTPSPPPTTMTTPSPTTT 1736
Score = 43.5 bits (101), Expect = 4e-04
Identities = 53/201 (26%), Positives = 70/201 (34%), Gaps = 23/201 (11%)
Query: 62 PPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 121
PP P S T P+T P A + T P ++ SP ++T ++ SPP TT
Sbjct: 1495 PPTTTP---SPPTTTPITPP-ASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTT--PIT 1548
Query: 122 SPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVM 181
P + P T +TT P S P + SP I T
Sbjct: 1549 PPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPT-----TTTPSPPTITTTTPPPTTTPS 1603
Query: 182 P----TKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQAT--QPLATP 235
P T +PPP P + PP+S +PP T + T P TP
Sbjct: 1604 PPTTTTTTPPPT------TTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP 1657
Query: 236 VVSVTTPSLPPQGLVYSAMPT 256
TT PP + PT
Sbjct: 1658 SPPTTTTPSPPITTTTTPPPT 1678
Score = 43.5 bits (101), Expect = 4e-04
Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 13/189 (6%)
Query: 66 PPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGA 125
PP T T+P + +P ++ +++TL ++ SPP TT P
Sbjct: 1597 PPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTT-TTPPPTT 1655
Query: 126 PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGN-----GFVNSRASPNLIGATGANSLGKV 180
PP+T ++TT P SSP+ + SP ++ +
Sbjct: 1656 TPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTP 1715
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVV--- 237
T +P PP M + P P ++ +PP T ++ P TP
Sbjct: 1716 SSTTTPSPP---PTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSP 1772
Query: 238 -SVTTPSLP 245
S TTP+ P
Sbjct: 1773 FSTTTPTTP 1781
Score = 28.9 bits (63), Expect = 9.4
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Query: 65 LPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPG 124
LPP M+ T P ++P A + T+ G +L SP PP TT PG
Sbjct: 4241 LPPA-IEMTSTAPPSTPTAPTTTSGGHTL-SP---------------PPSTT---TSPPG 4280
Query: 125 APQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATG 173
P R +TG++ +T T A + ++P++I TG
Sbjct: 4281 TPTRGTTTGSSSAPTPSTVQTTTTSAWTPT-----PTPLSTPSIIRTTG 4324
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 48.1 bits (113), Expect = 1e-05
Identities = 89/374 (23%), Positives = 129/374 (34%), Gaps = 45/374 (12%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSY--TNPGSSLVSPSLAASS-----TLTDSSMLSP 112
R P G PQ+ S S T P SP + SY T+P S SPS + +S T S SP
Sbjct: 1603 RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSP 1662
Query: 113 PQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT 172
+ + SP +P P++ + + T P+ + +SP + S + + +
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722
Query: 173 GANSLGKVMPTKSPPPPGGGNLGMN--SRKPDLRVVIP----------PSSKGMMP--PL 218
+ S P+ SP P N P+ P P+S P P
Sbjct: 1723 TSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPN 1782
Query: 219 NTQRISSSQATQPLATPVVSVTTPSLP---PQGLVYSAMPTAYNTD---YSLTSADLSAL 272
+ S T P +P +PS P PQ Y+ +Y+ YS TS +
Sbjct: 1783 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPT 1842
Query: 273 QGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPP 332
SP S + + +S + S S T S S SP
Sbjct: 1843 SPSYSPSSPEYTPTSPKYSPTSPKYSPTS----PKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Query: 333 RDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR------------SPVDSL 380
TP+ + P P+ P P P G SP SL
Sbjct: 1899 SPVYTPTS--PKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSL 1956
Query: 381 SSSSSSYDGSDRED 394
+S + S D SD E+
Sbjct: 1957 TSPAISPDDSDEEN 1970
Score = 43.5 bits (101), Expect = 4e-04
Identities = 87/359 (24%), Positives = 120/359 (33%), Gaps = 44/359 (12%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVS 122
P + P N + SP+ S PG++ SPS A +D+S SP + + +
Sbjct: 1515 PAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA-----SDASGFSPGYSPAW-SPT 1568
Query: 123 PGAPQRP-------PSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGAN 175
PG+P P PS G G M + T P SP G + SP +
Sbjct: 1569 PGSPGSPGPSSPYIPSPG--GAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPT------SP 1620
Query: 176 SLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIP---PSSKGMMPPLNTQRISSSQATQPL 232
S P+ SP P + P P P+S P + S + +
Sbjct: 1621 SYSPTSPSYSPTSP-----NYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSP 1673
Query: 233 ATPVVSVTTPSLPPQGLVYSAMPTAY---NTDYSLTSADLSALQGFNSPGMLSLGQVSAW 289
+P S T+PS P YS +Y + YS TS S SP S S
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP- 1732
Query: 290 QQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPS--GFQQQQQQ 347
+ S S S T+ + S S SP TP+ +
Sbjct: 1733 ---SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPS 1789
Query: 348 QQQQQP---PPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYD-GSDREDPRGDFHSP 402
P P P P P+ P+ S S SS SY S + P +SP
Sbjct: 1790 YSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSP 1848
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 48.1 bits (113), Expect = 1e-05
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 309 SQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 368
+ G++ + +TN N + P QQQQQQQQ QQ P QPQPQP Q QP
Sbjct: 72 NNGTSTATSTNNNAKRATANNQQP---------QQQQQQQQPQQQQPQQQPQPQPQQQQP 122
Query: 369 RQE 371
+Q+
Sbjct: 123 QQQ 125
Score = 41.6 bits (96), Expect = 0.001
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 343 QQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSL 380
QQ QQQQQQQ P QPQ QP QPQP+Q+ + +L
Sbjct: 93 QQPQQQQQQQQPQQQQPQQQP-QPQPQQQQPQQQPQAL 129
Score = 37.0 bits (84), Expect = 0.034
Identities = 64/274 (23%), Positives = 93/274 (33%), Gaps = 93/274 (33%)
Query: 139 LSTTDLTVPNGAGSSPVGNGFVN-----SRASPNL--IGATGANSLGKVMPTKSPPPPGG 191
L ++ +PN A S G G N +P++ +G T A G P P
Sbjct: 1300 LPPSNSALPNQALGSIAGLGMQNLNSVRQNGNPSMFGVGNTAAQPRGMQQPPAQP----- 1354
Query: 192 GNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGLVY 251
++S +P+LR +PP PL +P V V+
Sbjct: 1355 ----LSSSQPNLRAQVPP---------------------PLLSPQVPVSL---------- 1379
Query: 252 SAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQG 311
Y+ + L+ L G ML+ LS L Q+SQ
Sbjct: 1380 --------LKYAPNNGGLNPLFGPQQVAMLN---------------QLSQLNQLSQISQL 1416
Query: 312 SNLSINTNQNISIKSEPIS--PPRDRM-TPSGFQQQQQQQ----------QQQQPPPPPQ 358
L + S +S P P +D+ P QQQ QQ +QQ PP Q
Sbjct: 1417 QRLLAQQQRAQSQRSVPSGNRPQQDQQGRPLSVQQQMMQQSRQLDPNLLVKQQTPPSQQQ 1476
Query: 359 PQPQP----------PQPQPRQEMGRSPVDSLSS 382
P QP P P + G SP+++ S+
Sbjct: 1477 PLHQPAMKSFLDNVMPHTTPELQKGPSPINAFSN 1510
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 48.1 bits (113), Expect = 1e-05
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 254 MPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQG-- 311
+PTAY + L L + PG + +L +++ + G + G
Sbjct: 3111 LPTAYPALQGIPPVLLPGLNSPSLPGFTPSNTALTSPKPNLMGLPSTTVPSPGLPTSGLP 3170
Query: 312 -----SNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQP-PQ 365
++LS T ++ P PP+ QQQQQQ Q QQPPPPP QP P PQ
Sbjct: 3171 NKPSSASLSSPTPAQATMAMGPQQPPQQ-------QQQQQQPQVQQPPPPPAAQPPPTPQ 3223
Query: 366 PQPRQEMGRSPVDS 379
+Q+ R DS
Sbjct: 3224 LPLQQQQQRKDKDS 3237
Score = 39.7 bits (91), Expect = 0.005
Identities = 76/322 (23%), Positives = 100/322 (31%), Gaps = 47/322 (14%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVS 122
PG P N ++ TSP P +++ SP L S S S T +
Sbjct: 3135 PGFTPSNTAL------TSPKPNLMGLPSTTVPSPGLPTSGLPNKPSSASLSSPTPAQATM 3188
Query: 123 PGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMP 182
PQ+PP P A P + + + K
Sbjct: 3189 AMGPQQPPQQQQQQQQPQVQQPPPPPAAQPPPTPQLPLQQQQQRKDKDSEKVKEKEKAHK 3248
Query: 183 TKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPLATPVVSVTTP 242
K P P +P KG P IS+ PL T +V
Sbjct: 3249 GKGEPLP-----------------VPKKEKGEAPTATAATISA-----PLPTMEYAVDPA 3286
Query: 243 SLPPQGLVYSAMPTAYNTDYSLTS--ADLSALQGFNSPGMLSLGQVS---AWQQHHLGQA 297
L ++ PTA T L S PG L G + +
Sbjct: 3287 QLQALQAALTSDPTALLTSQFLPYFVPGFSPYYAPQIPGALQSGYLQPMYGMEGLFPYSP 3346
Query: 298 ALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ----- 352
ALS + G LS GS L S++ E I + R QQQQQ+ QQQQ
Sbjct: 3347 ALSQALMG--LSPGSLLQQYQQYQQSLQ-EAIQQQQQRQLQ---QQQQQKVQQQQPKASQ 3400
Query: 353 ---PPPPPQPQPQPPQPQPRQE 371
PP P P P + P+ E
Sbjct: 3401 TPVPPGAPSPDKDPAKESPKPE 3422
Score = 32.7 bits (73), Expect = 0.65
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 321 NISIKSEPISPPRDRMTP--SGFQQQQQQQQQQQPPPPPQPQPQ 362
NI+ SEP R ++ + QQQQQQQQQQQ Q Q Q
Sbjct: 1700 NIASPSEPKEANRKKLADMIASRQQQQQQQQQQQQQQQQQQQAQ 1743
Score = 32.3 bits (72), Expect = 0.85
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 349 QQQQPPPPPQPQPQPPQPQPRQEMGRSP 376
Q +PPPPP P P PP P + +P
Sbjct: 2035 QTPEPPPPPPPPPPPPLPAAPPQPASTP 2062
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,888,294
Number of Sequences: 37866
Number of extensions: 1479492
Number of successful extensions: 28193
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 729
Number of HSP's that attempted gapping in prelim test: 13446
Number of HSP's gapped (non-prelim): 8382
length of query: 429
length of database: 18,247,518
effective HSP length: 105
effective length of query: 324
effective length of database: 14,271,588
effective search space: 4623994512
effective search space used: 4623994512
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.