Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 195963431
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]
(642 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens] 1312 0.0
gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens] 806 0.0
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 47 7e-05
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 45 3e-04
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 44 4e-04
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 44 5e-04
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 42 0.001
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 42 0.001
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 42 0.001
gi|41281612 zinc finger protein 828 [Homo sapiens] 41 0.003
gi|210032580 SET domain containing 1B [Homo sapiens] 41 0.003
gi|226437579 NAC alpha domain containing [Homo sapiens] 41 0.004
gi|83367077 mucin 16 [Homo sapiens] 41 0.004
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 41 0.004
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 41 0.004
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 41 0.004
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 41 0.004
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.005
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 40 0.005
gi|54873613 agrin [Homo sapiens] 40 0.007
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.007
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 40 0.007
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 40 0.007
gi|91208420 bassoon protein [Homo sapiens] 40 0.009
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 40 0.009
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 0.009
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.011
gi|148922920 DENN/MADD domain containing 4B [Homo sapiens] 39 0.011
gi|223972612 Crm, cramped-like [Homo sapiens] 39 0.015
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 39 0.015
>gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]
Length = 642
Score = 1312 bits (3396), Expect = 0.0
Identities = 642/642 (100%), Positives = 642/642 (100%)
Query: 1 MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60
MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG
Sbjct: 1 MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60
Query: 61 NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120
NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL
Sbjct: 61 NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120
Query: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180
CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR
Sbjct: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180
Query: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240
QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF
Sbjct: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240
Query: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300
APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV
Sbjct: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300
Query: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360
VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT
Sbjct: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360
Query: 361 SLCCLVGFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIP 420
SLCCLVGFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIP
Sbjct: 361 SLCCLVGFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIP 420
Query: 421 SPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLP 480
SPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLP
Sbjct: 421 SPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLP 480
Query: 481 SPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHN 540
SPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHN
Sbjct: 481 SPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHN 540
Query: 541 GSLFTMEPPHVPRKPPLQDVKHALDLRSKLERGSACSNRSIKKEDDSSQSSTCVVDTTTR 600
GSLFTMEPPHVPRKPPLQDVKHALDLRSKLERGSACSNRSIKKEDDSSQSSTCVVDTTTR
Sbjct: 541 GSLFTMEPPHVPRKPPLQDVKHALDLRSKLERGSACSNRSIKKEDDSSQSSTCVVDTTTR 600
Query: 601 GCSEEAATWRGRFGPSLVRGLLAVSLAANALFTSVFLYQSLR 642
GCSEEAATWRGRFGPSLVRGLLAVSLAANALFTSVFLYQSLR
Sbjct: 601 GCSEEAATWRGRFGPSLVRGLLAVSLAANALFTSVFLYQSLR 642
>gi|58197554 transmembrane protein 201 isoform 2 [Homo sapiens]
Length = 392
Score = 806 bits (2083), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60
MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG
Sbjct: 1 MEGVSALLARCPTAGLAGGLGVTACAAAGVLLYRIARRMKPTHTMVNCWFCNQDTLVPYG 60
Query: 61 NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120
NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL
Sbjct: 61 NRNCWDCPHCEQYNGFQENGDYNKPIPAQYLEHLNHVVSSAPSLRDPSQPQQWVSSQVLL 120
Query: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180
CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR
Sbjct: 121 CKRCNHHQTTKIKQLAAFAPREEGRYDEEVEVYRHHLEQMYKLCRPCQAAVEYYIKHQNR 180
Query: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240
QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF
Sbjct: 181 QLRALLLSHQFKRREADQTHAQNFSSAVKSPVQVILLRALAFLACAFLLTTALYGASGHF 240
Query: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300
APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV
Sbjct: 241 APGTTVPLALPPGGNGSATPDNGTTPGAEGWRQLLGLLPEHMAEKLCEAWAFGQSHQTGV 300
Query: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360
VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT
Sbjct: 301 VALGLLTCLLAMLLAGRIRLRRIDAFCTCLWALLLGLHLAEQHLQAASPSWLDTLKFSTT 360
Query: 361 SLCCLVGFTAAVATRKATGPRRFRPRR 387
SLCCLVGFTAAVATRKATGPRRFRPRR
Sbjct: 361 SLCCLVGFTAAVATRKATGPRRFRPRR 387
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 46.6 bits (109), Expect = 7e-05
Identities = 53/196 (27%), Positives = 76/196 (38%), Gaps = 14/196 (7%)
Query: 367 GFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFL 426
G+T + T P + S PTSPS + PS + S + P+ PS+
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYS 1665
Query: 427 PLANQQLFRSPRR--TSPSSLPGRLSRALSLGTIPSL--TRADYFSLLSGSCPSSPLPSP 482
P + SP TSPS P S + T PS T Y P+SP SP
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722
Query: 483 APSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPS---SSDEHSPH 539
+ S + +S S P SP N P+ P +PT+PS +S ++P
Sbjct: 1723 T---SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPT 1779
Query: 540 NGSLFTMEPPHVPRKP 555
+ + P + P P
Sbjct: 1780 SPNYSPTSPSYSPTSP 1795
Score = 46.2 bits (108), Expect = 9e-05
Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Query: 388 FFPGDSAGLFPT-----SPSLAIPH-PSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTS 441
F PG S PT SP + P+ PS GG+ + + P+ P++ P RSP +
Sbjct: 1557 FSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEP-------RSPGGYT 1609
Query: 442 PSSLPGRLSRALSLGTIPSL--TRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRH 499
P S + T PS T +Y P+SP SP + S + +S S
Sbjct: 1610 PQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSP 1666
Query: 500 RRPLISPARLNLKGQKLLLFPSPPGEAPTTPS---SSDEHSPHNGSLFTMEPPHVPRKP 555
P SP + P+ P +PT+PS +S +SP + S P + P P
Sbjct: 1667 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Score = 44.7 bits (104), Expect = 3e-04
Identities = 49/169 (28%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRT--SPSSLPGRLSRALSL 455
PTSPS + PS + S + P+ PS+ P + SP T SPS P
Sbjct: 1715 PTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP--------- 1764
Query: 456 GTIPSL--TRADYFSLLSGSCPSSPLPSP-APS---VAGSVASSSGSLRHRRPLISPARL 509
T PS T +Y P+SP SP +PS + S + SS + P +P+
Sbjct: 1765 -TSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSP 1823
Query: 510 NLKGQKLLLFPSPPGEAPTTPS---SSDEHSPHNGSLFTMEPPHVPRKP 555
+ P+ P PT+PS SS E++P + P + P P
Sbjct: 1824 SYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSP 1872
Score = 42.0 bits (97), Expect = 0.002
Identities = 49/169 (28%), Positives = 69/169 (40%), Gaps = 15/169 (8%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRR--TSPSSLPGRLSRALSL 455
PTSPS + PS + S + P+ PS+ P + SP TSPS P S +
Sbjct: 1680 PTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--- 1735
Query: 456 GTIPSL--TRADYFSLLSGSCPSSPLPSP-APS---VAGSVASSSGSLRHRRPLISPARL 509
T PS T +Y P+SP SP +PS + + +S + P SP
Sbjct: 1736 PTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP 1795
Query: 510 NLKGQKLLLFPSPPGEAPTTPS---SSDEHSPHNGSLFTMEPPHVPRKP 555
+ PS P P +P+ SS +SP + S P + P P
Sbjct: 1796 SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSP 1844
Score = 33.1 bits (74), Expect = 0.81
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 398 PTSPSLAIPHPSVGGSPAS-LFIPSPPSFLPLANQQLFRSPRR--TSPSSLPGRLSRALS 454
P+SPS + PS SP S + P+ PS+ P + + SP+ TSP P + +
Sbjct: 1820 PSSPSYSPSSPSY--SPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPT 1877
Query: 455 LGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQ 514
T S T Y P+SP+ +P + + + SP +
Sbjct: 1878 SPTY-SPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK 1936
Query: 515 KLLLFPSPPGEAPTTPSSS 533
P+ PG +PT+P+ S
Sbjct: 1937 GSTYSPTSPGYSPTSPTYS 1955
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 44.7 bits (104), Expect = 3e-04
Identities = 56/161 (34%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 400 SPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIP 459
SP +P P P +PSPPS +PL + SP PS +P S SL +P
Sbjct: 193 SPPSDVPSPP-SDVPLLSDVPSPPSDVPLLSD--VPSP----PSDVPSLPSDVPSLSGVP 245
Query: 460 SLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRP-LIS--PARLNLKGQKL 516
S +D SLLSG PS P PS S+ S SL P L+S P+ + L
Sbjct: 246 S-PPSDVPSLLSG-VPSPPSDISPPSDVPSLLSDVPSLPSDVPSLLSGVPSPPSDVPSLL 303
Query: 517 LLFPSPPGEAPTTPSSSDEHS--PHNGSLFTMEPPHVPRKP 555
PSPP + P+ PS S P S P VP P
Sbjct: 304 SDVPSPPSDVPSPPSDIPLLSGVPSPPSDVPSPPSDVPSPP 344
Score = 40.0 bits (92), Expect = 0.007
Identities = 54/160 (33%), Positives = 64/160 (40%), Gaps = 41/160 (25%)
Query: 402 SLAIPH-PSVGGSPASLFIPSPPSFLP--LANQQLFRSPRRTSPSSLPGRLSRALSLGTI 458
SL PH P V SP +PSPPS +P L+ S + PS +P LS
Sbjct: 98 SLVSPHRPLV--SPLLSGVPSPPSDVPSLLSGVPSLPSDVSSPPSDVPSLLS-------- 147
Query: 459 PSLTRADYFSLLSG-SCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLL 517
D SLLSG P S +PSP PS S S SL L G
Sbjct: 148 ------DVPSLLSGVPSPPSDVPSP-PSDVPSPPSDVPSL-------------LSG---- 183
Query: 518 LFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPL 557
PSPP + P+ P SD SP + + P P PL
Sbjct: 184 -VPSPPSDVPSPP--SDVPSPPSDVPLLSDVPSPPSDVPL 220
Score = 38.9 bits (89), Expect = 0.015
Identities = 47/137 (34%), Positives = 58/137 (42%), Gaps = 29/137 (21%)
Query: 401 PSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSP-SSLPGRLSRALSLGTIP 459
PSL PS+ G +PSPPS +P + P SP S +P LS +P
Sbjct: 232 PSLPSDVPSLSG------VPSPPSDVPSLLSGVPSPPSDISPPSDVPSLLS------DVP 279
Query: 460 SLTRADYFSLLSGSCPSSP-----LPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQ 514
SL +D SLLSG PS P L S PS V S + PL+S
Sbjct: 280 SLP-SDVPSLLSG-VPSPPSDVPSLLSDVPSPPSDVPSPPSDI----PLLSGVPSPPSD- 332
Query: 515 KLLLFPSPPGEAPTTPS 531
PSPP + P+ PS
Sbjct: 333 ----VPSPPSDVPSPPS 345
Score = 35.4 bits (80), Expect = 0.16
Identities = 48/154 (31%), Positives = 61/154 (39%), Gaps = 23/154 (14%)
Query: 390 PGDSAGLFPTSPSLAIPHPSVGG---SPASLFIPSPPSFLPLANQQLFRSPRR---TSPS 443
P D L PS PS+ SP S +PSPPS +PL + SP + PS
Sbjct: 282 PSDVPSLLSGVPSPPSDVPSLLSDVPSPPS-DVPSPPSDIPLLSG--VPSPPSDVPSPPS 338
Query: 444 SLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPL 503
+P S L +PS LLSG +PSP V + S L L
Sbjct: 339 DVPSPPSDVPLLSGVPS--PLSDVPLLSG------VPSPPSDVPSLLMSPHRLLMSHYSL 390
Query: 504 ISPARLNLKG------QKLLLFPSPPGEAPTTPS 531
+SP RL++ L PS P P+ PS
Sbjct: 391 VSPHRLDVPSLLSDVPSLLSGVPSSPSGVPSLPS 424
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 44.3 bits (103), Expect = 4e-04
Identities = 72/266 (27%), Positives = 98/266 (36%), Gaps = 68/266 (25%)
Query: 346 AASPSWLDTLKFSTTSLCCLVGFTA------AVATRKATGPRRFRPRRFFPGDSAGLFPT 399
A+SPS +DT S+ + L GF+A + + ++ P P SAG+ T
Sbjct: 843 ASSPSQVDTPSSSSFHIQQLAGFSAPAGLSPLLPSSSSSPPPGACGSPSAPTPSAGVAAT 902
Query: 400 --------------------SPSLAIPHPSVGGSPASLFIPSPPSF---LPLANQQLFRS 436
SP L P A+ P+PP L L L
Sbjct: 903 TIAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAAQPSPAPPGARGGLGLPEHFLPPP 962
Query: 437 PRRTSPSSLPGRLSR---ALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASS 493
P SPSS PG+L + LSLG L +G + P P VA +
Sbjct: 963 PSSRSPSSSPGQLGQPPGELSLG------------LATGPLSTPETPPRQPEPPSLVAGA 1010
Query: 494 SGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAP----TTPSSSDEHSPHNGSLF----- 544
SG SP +G SPPG +P T PS+ S +GSL
Sbjct: 1011 SGG-------ASPVGFTPRGGL-----SPPGHSPGPPRTFPSAPPRASGSHGSLLLPPAS 1058
Query: 545 TMEPPHVPRK---PPLQDVKHALDLR 567
+ PP VP++ PPL + DL+
Sbjct: 1059 SPPPPQVPQRRGTPPLTPGRLTQDLK 1084
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 43.9 bits (102), Expect = 5e-04
Identities = 44/139 (31%), Positives = 56/139 (40%), Gaps = 26/139 (18%)
Query: 374 TRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQL 433
T PR RPRR PG A L PT P P G P+PP P +
Sbjct: 105 TASTAPPRHPRPRR--PGGPA-LRPT------PRPCAG--------PAPP---PASRDCR 144
Query: 434 FRSPRRTSPSSLPGRLSRALSLGTIPSLTRA------DYFSLLSGSCPSSPLPSPAPSVA 487
R PRR + GR + A + A Y + +GSC + P+PAP+ A
Sbjct: 145 CRRPRRWPRAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGSCGARTAPTPAPTCA 204
Query: 488 GSVASSSGSLRHRRPLISP 506
A++S R RR SP
Sbjct: 205 SPSAAASSCCRRRRACSSP 223
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 42.4 bits (98), Expect = 0.001
Identities = 50/174 (28%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGT 457
P+SP+L P S G P L IP+ PS P L + T P L L T
Sbjct: 745 PSSPALQTPSLSSGQLPP-LLIPTDPSSPPPCPPVLTVA---TPPPPL---------LPT 791
Query: 458 IPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLL 517
+P L + S +SP P P+P S A++ L P +SP+ + + L
Sbjct: 792 VP---------LPAPSSSASPHPCPSPL---SNATAQSPLPILSPTVSPSPSPIPPVEPL 839
Query: 518 LFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQDVKHALDLRSKLE 571
+ + PG P T SSS S + S + P PPL + + LE
Sbjct: 840 MSAASPG--PPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLE 891
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 42.4 bits (98), Expect = 0.001
Identities = 50/174 (28%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGT 457
P+SP+L P S G P L IP+ PS P L + T P L L T
Sbjct: 946 PSSPALQTPSLSSGQLPP-LLIPTDPSSPPPCPPVLTVA---TPPPPL---------LPT 992
Query: 458 IPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLL 517
+P L + S +SP P P+P S A++ L P +SP+ + + L
Sbjct: 993 VP---------LPAPSSSASPHPCPSPL---SNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
Query: 518 LFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQDVKHALDLRSKLE 571
+ + PG P T SSS S + S + P PPL + + LE
Sbjct: 1041 MSAASPG--PPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLE 1092
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 42.4 bits (98), Expect = 0.001
Identities = 50/174 (28%), Positives = 70/174 (40%), Gaps = 27/174 (15%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGT 457
P+SP+L P S G P L IP+ PS P L + T P L L T
Sbjct: 946 PSSPALQTPSLSSGQLPP-LLIPTDPSSPPPCPPVLTVA---TPPPPL---------LPT 992
Query: 458 IPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLL 517
+P L + S +SP P P+P S A++ L P +SP+ + + L
Sbjct: 993 VP---------LPAPSSSASPHPCPSPL---SNATAQSPLPILSPTVSPSPSPIPPVEPL 1040
Query: 518 LFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQDVKHALDLRSKLE 571
+ + PG P T SSS S + S + P PPL + + LE
Sbjct: 1041 MSAASPG--PPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLE 1092
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 41.2 bits (95), Expect = 0.003
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 24/184 (13%)
Query: 398 PTSPSLAIPHPSVGG---SPASLFIPSPPSFLPLANQQLFR-SP--RRTSPSSLPGRLSR 451
P SP L P P + SPA SP P + L++ SP R+TSP+SL S+
Sbjct: 414 PVSPELRKPGPPLSPEIRSPAG----SPELRKPSGSPDLWKLSPDQRKTSPASLDFPESQ 469
Query: 452 ALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNL 511
S G P L ++ +F + P P + P +G S + +P++S ++
Sbjct: 470 KSSRGGSPDLWKSSFF--IEPQKPVFP-ETRKPGPSGPSESPKAASDIWKPVLS---IDT 523
Query: 512 KGQKLLLFPSPPGEAPTTPSSSDEHS----PHNGSLFTMEPPHVPRKPPLQDVKHALDLR 567
+ +K LFP P AP + + + P +LF P +P+ + + A++L
Sbjct: 524 EPRKPALFPEPAKTAPPASPEARKRALFPEPRKHALF----PELPKSALFSESQKAVELG 579
Query: 568 SKLE 571
+L+
Sbjct: 580 DELQ 583
Score = 35.0 bits (79), Expect = 0.21
Identities = 36/125 (28%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 400 SPSLAIPHPSVGGS-PASLFIPSPPSFLPLANQQLF--------RSPRRTSPSSLPGRLS 450
SP L P PS S PAS+ P PP +P+ Q + P SP S+ LS
Sbjct: 164 SPELQTPLPSPEPSKPASVSSPEPPKSVPVCESQKLAPVPSPEPQKPAPVSPESVKATLS 223
Query: 451 RAL---------SLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRR 501
+LG PS + + L + P P P+ +P S ++S R
Sbjct: 224 NPKPQKQSHFPETLGP-PSASSPESPVLAASPEPWGPSPAASPESRKSARTTSPEPRKPS 282
Query: 502 PLISP 506
P SP
Sbjct: 283 PSESP 287
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 41.2 bits (95), Expect = 0.003
Identities = 54/215 (25%), Positives = 72/215 (33%), Gaps = 53/215 (24%)
Query: 390 PGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSP--------------------------P 423
PG L S L++ P V GSP S PSP P
Sbjct: 1340 PGGEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFTPTFSEPSGP 1399
Query: 424 SFLPLANQQLFRSPRRTSPSSLPGRLSRALSLG---------TIPSLTRADYFSLLSGSC 474
LP+ R R+ P + P L L L +P++ RA
Sbjct: 1400 LLLPVCPLPTGRRDERSGPLASPVLLETGLPLPLPLPLPLPLALPAVLRAQ----ARAPT 1455
Query: 475 PSSP-LPSPAPSVAGSVASSSGSLRHR--------RPLISPARLNLKGQKLLLFPSPPGE 525
P P LP+P S + G R PL+ P G++LLL P P +
Sbjct: 1456 PLPPLLPAPLASCPPPMKRKPGRPRRSPPSMLSLDGPLVRPPAGAALGRELLLLPGQP-Q 1514
Query: 526 APTTPSSSDEHSP----HNGSLFTMEPPHVPRKPP 556
P PS+ D + N + PP P+ PP
Sbjct: 1515 TPVFPSTHDPRTVTLDFRNAGIPAPPPPLPPQPPP 1549
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 40.8 bits (94), Expect = 0.004
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 406 PHPSVGGSPASLFIP-SPPSFLPLANQQLFRSPRR---------TSPSSLPGRLSRALSL 455
P ++GG+ +P +PP+ P +Q SP R T +LP ++ SL
Sbjct: 1093 PRSALGGARE---VPDAPPAACPEVSQARLLSPAREERGLSGKSTPEPTLPSAVATEASL 1149
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAP-SVAGSVASSSGSLRHRR--------PLISP 506
+ P + SL G CP +P P+ AP S GS+ PL+ P
Sbjct: 1150 DSCPESSVGAVSSLDRG-CPDAPAPTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQP 1208
Query: 507 ARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPP 549
KGQ PS P + P P S + +L +EPP
Sbjct: 1209 PENLAKGQ-----PSTPVDRPLGPDPSAPGTLAGAALPPLEPP 1246
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 40.8 bits (94), Expect = 0.004
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 27/186 (14%)
Query: 369 TAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPL 428
T+ VA+ +A PG+ T+PS+A H G+ AS +P+ +P
Sbjct: 10989 TSLVASSRAVTSTTLPTLTLSPGEPE----TTPSMATSH----GAEASSTVPTVSPEVPG 11040
Query: 429 ANQQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSP--APSV 486
L S + +S+P + L T PS+ + G+ SS +P+P +P V
Sbjct: 11041 VVTSLVTSSSGVNSTSIPTLILSPGELETTPSMATSH------GAEASSAVPTPTVSPGV 11094
Query: 487 AGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTM 546
+G V PL++ +R + + + E TTPS + H S
Sbjct: 11095 SGVVT----------PLVTSSRA-VTSTTIPILTLSSSEPETTPSMATSHGVEASSAVLT 11143
Query: 547 EPPHVP 552
P VP
Sbjct: 11144 VSPEVP 11149
Score = 39.3 bits (90), Expect = 0.011
Identities = 49/165 (29%), Positives = 63/165 (38%), Gaps = 29/165 (17%)
Query: 393 SAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSF--LPLANQQLFRSPRRTSPSSLPGRLS 450
S G T+PS+A H G AS IP+P +P L S R + +++P
Sbjct: 10899 SPGEPETTPSMATSH----GEEASSAIPTPTVSPGVPGVVTSLVTSSRAVTSTTIP---I 10951
Query: 451 RALSLG---TIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPA 507
SLG T PS+ + G+ S +P+ P V G V S S R P
Sbjct: 10952 LTFSLGEPETTPSMATSH------GTEAGSAVPTVLPEVPGMVTSLVASSRAVTSTTLPT 11005
Query: 508 RLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVP 552
L L PGE TTPS + H S P VP
Sbjct: 11006 -LTLS----------PGEPETTPSMATSHGAEASSTVPTVSPEVP 11039
Score = 39.3 bits (90), Expect = 0.011
Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 21/150 (14%)
Query: 393 SAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRA 452
S G T+PS+A H + GS +P P + L S R + ++LP
Sbjct: 10955 SLGEPETTPSMATSHGTEAGSAVPTVLPEVPGMVT----SLVASSRAVTSTTLPTLTLSP 11010
Query: 453 LSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLK 512
T PS+ + G+ SS +P+ +P V G V S + S + +N
Sbjct: 11011 GEPETTPSMATSH------GAEASSTVPTVSPEVPGVVTSL---------VTSSSGVNST 11055
Query: 513 GQKLLLFPSPPGEAPTTPSSSDEHSPHNGS 542
L+ PGE TTPS + H S
Sbjct: 11056 SIPTLILS--PGELETTPSMATSHGAEASS 11083
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 40.8 bits (94), Expect = 0.004
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 406 PHPSVGGSPASLFIP-SPPSFLPLANQQLFRSPRR---------TSPSSLPGRLSRALSL 455
P ++GG+ +P +PP+ P +Q SP R T +LP ++ SL
Sbjct: 1053 PRSALGGARE---VPDAPPAACPEVSQARLLSPAREERGLSGKSTPEPTLPSAVATEASL 1109
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAP-SVAGSVASSSGSLRHRR--------PLISP 506
+ P + SL G CP +P P+ AP S GS+ PL+ P
Sbjct: 1110 DSCPESSVGAVSSLDRG-CPDAPAPTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQP 1168
Query: 507 ARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPP 549
KGQ PS P + P P S + +L +EPP
Sbjct: 1169 PENLAKGQ-----PSTPVDRPLGPDPSAPGTLAGAALPPLEPP 1206
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 40.8 bits (94), Expect = 0.004
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 406 PHPSVGGSPASLFIP-SPPSFLPLANQQLFRSPRR---------TSPSSLPGRLSRALSL 455
P ++GG+ +P +PP+ P +Q SP R T +LP ++ SL
Sbjct: 1053 PRSALGGARE---VPDAPPAACPEVSQARLLSPAREERGLSGKSTPEPTLPSAVATEASL 1109
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAP-SVAGSVASSSGSLRHRR--------PLISP 506
+ P + SL G CP +P P+ AP S GS+ PL+ P
Sbjct: 1110 DSCPESSVGAVSSLDRG-CPDAPAPTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQP 1168
Query: 507 ARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPP 549
KGQ PS P + P P S + +L +EPP
Sbjct: 1169 PENLAKGQ-----PSTPVDRPLGPDPSAPGTLAGAALPPLEPP 1206
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 40.8 bits (94), Expect = 0.004
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 406 PHPSVGGSPASLFIP-SPPSFLPLANQQLFRSPRR---------TSPSSLPGRLSRALSL 455
P ++GG+ +P +PP+ P +Q SP R T +LP ++ SL
Sbjct: 1093 PRSALGGARE---VPDAPPAACPEVSQARLLSPAREERGLSGKSTPEPTLPSAVATEASL 1149
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAP-SVAGSVASSSGSLRHRR--------PLISP 506
+ P + SL G CP +P P+ AP S GS+ PL+ P
Sbjct: 1150 DSCPESSVGAVSSLDRG-CPDAPAPTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQP 1208
Query: 507 ARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPP 549
KGQ PS P + P P S + +L +EPP
Sbjct: 1209 PENLAKGQ-----PSTPVDRPLGPDPSAPGTLAGAALPPLEPP 1246
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 40.8 bits (94), Expect = 0.004
Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 406 PHPSVGGSPASLFIP-SPPSFLPLANQQLFRSPRR---------TSPSSLPGRLSRALSL 455
P ++GG+ +P +PP+ P +Q SP R T +LP ++ SL
Sbjct: 1053 PRSALGGARE---VPDAPPAACPEVSQARLLSPAREERGLSGKSTPEPTLPSAVATEASL 1109
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAP-SVAGSVASSSGSLRHRR--------PLISP 506
+ P + SL G CP +P P+ AP S GS+ PL+ P
Sbjct: 1110 DSCPESSVGAVSSLDRG-CPDAPAPTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQP 1168
Query: 507 ARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPP 549
KGQ PS P + P P S + +L +EPP
Sbjct: 1169 PENLAKGQ-----PSTPVDRPLGPDPSAPGTLAGAALPPLEPP 1206
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 40.4 bits (93), Expect = 0.005
Identities = 54/169 (31%), Positives = 65/169 (38%), Gaps = 35/169 (20%)
Query: 398 PTSPSLAIPHPSVGGSPASLFI-------PSPP---SFLPLANQQLFRSPRRTSPSSLPG 447
P SP LA P P + A + PSPP F P A+ + SP T PS P
Sbjct: 416 PLSP-LATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPV--SPSATPPSQAPP 472
Query: 448 RLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPA 507
L+ A L PS S P SP +P P +A+ L P PA
Sbjct: 473 SLA-APPLQVPPSPP---------ASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPA 522
Query: 508 RLNLKGQKLLLFPSPP----GEAPTTPSSSDEHSPHNGSLFTMEPPHVP 552
L L PSPP G+AP +PS+S SP PP P
Sbjct: 523 ---LATPPLQALPSPPASFPGQAPFSPSASLPMSP-----LATPPPQAP 563
Score = 36.6 bits (83), Expect = 0.073
Identities = 57/218 (26%), Positives = 76/218 (34%), Gaps = 15/218 (6%)
Query: 344 LQAASPSWLDTLKFSTTSLCCLVGFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTS--- 400
LQ+ +P L S+ SL C + +A + P + P TS
Sbjct: 313 LQSQAPPTLPATPHSS-SLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGS 371
Query: 401 PSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPS 460
P+L H + P S PP P P +P S P S LS PS
Sbjct: 372 PTLQATHSFLPSPPLSPLATPPPQAPPA-----LALPPLQAPPSPPA--SPPLSPLATPS 424
Query: 461 LTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFP 520
+ ++ P SP PSP S +S P S A +L L + P
Sbjct: 425 PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPP-SQAPPSLAAPPLQVPP 483
Query: 521 SPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQ 558
SPP P +PS++ P PP KPP Q
Sbjct: 484 SPPASPPMSPSAT---PPPQAPPPLAAPPLQLAKPPPQ 518
Score = 36.2 bits (82), Expect = 0.096
Identities = 58/214 (27%), Positives = 85/214 (39%), Gaps = 38/214 (17%)
Query: 371 AVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPH---PSVGGSPASLFIP------- 420
A+ + T PR+ P S+ L SPS A+ P++ +P S +
Sbjct: 279 ALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPL 338
Query: 421 --SPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSP 478
+PPS + Q SP T PS SLG+ P+L F S P SP
Sbjct: 339 PLAPPSPSAPPSLQTLPSPPATPPSQA------TTSLGS-PTLQATHSFL---PSPPLSP 388
Query: 479 LPSPAPSVAGSVA-------SSSGSLRHRRPLISPARLNLKGQKLLLF-------PSPPG 524
L +P P ++A S + PL +P+ + L PSPP
Sbjct: 389 LATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV 448
Query: 525 EAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQ 558
+AP +P +S SP + + + PP + PPLQ
Sbjct: 449 QAPFSPPASPPVSP-SATPPSQAPPSL-AAPPLQ 480
Score = 33.5 bits (75), Expect = 0.62
Identities = 44/164 (26%), Positives = 60/164 (36%), Gaps = 38/164 (23%)
Query: 398 PTSPSLAIPH---PSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALS 454
P SPS P P + P L P P + LA L P + P+S PG+
Sbjct: 490 PMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALP--SPPASFPGQAP---- 543
Query: 455 LGTIPSLTRADYFSLLSGSCPSSPLPSPAP-----------SVAGSVASSSGSLRHRRPL 503
FS S S P SPL +P P V S +S RRP
Sbjct: 544 ------------FSP-SASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPP 590
Query: 504 ISPARLNLKGQKLLLF-----PSPPGEAPTTPSSSDEHSPHNGS 542
++ G +L L P PP +P++ S + + H+ S
Sbjct: 591 TPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSS 634
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 40.4 bits (93), Expect = 0.005
Identities = 54/169 (31%), Positives = 65/169 (38%), Gaps = 35/169 (20%)
Query: 398 PTSPSLAIPHPSVGGSPASLFI-------PSPP---SFLPLANQQLFRSPRRTSPSSLPG 447
P SP LA P P + A + PSPP F P A+ + SP T PS P
Sbjct: 377 PLSP-LATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPV--SPSATPPSQAPP 433
Query: 448 RLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPA 507
L+ A L PS S P SP +P P +A+ L P PA
Sbjct: 434 SLA-APPLQVPPSPP---------ASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPA 483
Query: 508 RLNLKGQKLLLFPSPP----GEAPTTPSSSDEHSPHNGSLFTMEPPHVP 552
L L PSPP G+AP +PS+S SP PP P
Sbjct: 484 ---LATPPLQALPSPPASFPGQAPFSPSASLPMSP-----LATPPPQAP 524
Score = 39.7 bits (91), Expect = 0.009
Identities = 58/197 (29%), Positives = 80/197 (40%), Gaps = 38/197 (19%)
Query: 376 KATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFR 435
+A P + P R + G +SP LA P PS SP++ PPS Q
Sbjct: 269 QALRPPQVTPPRKDAAPALGPLSSSP-LATPSPSAPPSPSA-----PPSL------QTLP 316
Query: 436 SPRRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVA---- 491
SP T PS SLG+ P+L F S P SPL +P P ++A
Sbjct: 317 SPPATPPSQA------TTSLGS-PTLQATHSFL---PSPPLSPLATPPPQAPPALALPPL 366
Query: 492 ---SSSGSLRHRRPLISPARLNLKGQKLLLF-------PSPPGEAPTTPSSSDEHSPHNG 541
S + PL +P+ + L PSPP +AP +P +S SP +
Sbjct: 367 QAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSP-SA 425
Query: 542 SLFTMEPPHVPRKPPLQ 558
+ + PP + PPLQ
Sbjct: 426 TPPSQAPPSL-AAPPLQ 441
Score = 33.5 bits (75), Expect = 0.62
Identities = 44/164 (26%), Positives = 60/164 (36%), Gaps = 38/164 (23%)
Query: 398 PTSPSLAIPH---PSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALS 454
P SPS P P + P L P P + LA L P + P+S PG+
Sbjct: 451 PMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALP--SPPASFPGQAP---- 504
Query: 455 LGTIPSLTRADYFSLLSGSCPSSPLPSPAP-----------SVAGSVASSSGSLRHRRPL 503
FS S S P SPL +P P V S +S RRP
Sbjct: 505 ------------FSP-SASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPP 551
Query: 504 ISPARLNLKGQKLLLF-----PSPPGEAPTTPSSSDEHSPHNGS 542
++ G +L L P PP +P++ S + + H+ S
Sbjct: 552 TPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSS 595
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 40.0 bits (92), Expect = 0.007
Identities = 33/99 (33%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGT 457
PTS S+ + P + S A +P+PP LPLA S PSS P T
Sbjct: 979 PTSASVTVTTPGLLLSQA---LPAPPGALPLAPSSTAHSQTTPPPSSRP---------RT 1026
Query: 458 IPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGS 496
S+ R + +L+ PSPAPS+ S SGS
Sbjct: 1027 TASVPRTTVWPVLT---VPPTAPSPAPSLVASAFGESGS 1062
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 40.0 bits (92), Expect = 0.007
Identities = 46/165 (27%), Positives = 61/165 (36%), Gaps = 30/165 (18%)
Query: 398 PTSPSLAIP----HPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRAL 453
P SP LA P PS P+ +PSPP+ P + PS +
Sbjct: 332 PPSPPLATPLPLAPPSPSAPPSLQTLPSPPA----------TPPSQAPPSMTTPPMQAPP 381
Query: 454 SLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKG 513
SL TIP + + S P SPL + S+ S + H +SP +
Sbjct: 382 SLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQT---- 437
Query: 514 QKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQ 558
Q L PS P A T P S +P + +P PPLQ
Sbjct: 438 QASLTSPSRP--ASTPPDSPPLQAPLS----------LPASPPLQ 470
Score = 38.1 bits (87), Expect = 0.025
Identities = 49/169 (28%), Positives = 64/169 (37%), Gaps = 14/169 (8%)
Query: 399 TSPSLAIPHPSVG---GSPASLFIPSPPSFLPLANQQ-----LFRSPRRTSPSSLPGRLS 450
T S+A P P SP +PSPP PLA P +P S P S
Sbjct: 583 TPSSIATPPPQAPPALASPPLQGLPSPP-LSPLATPPPQAPPXLALPPLQAPPSPPA--S 639
Query: 451 RALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLN 510
LS PS + ++ P SP PSP S +S P S A +
Sbjct: 640 PPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPP-SQAPPS 698
Query: 511 LKGQKLLLFPSPPGEAPTTPSSS--DEHSPHNGSLFTMEPPHVPRKPPL 557
L L + PSPP P +PS++ + P + PP P PP+
Sbjct: 699 LAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPM 747
Score = 37.4 bits (85), Expect = 0.043
Identities = 53/172 (30%), Positives = 65/172 (37%), Gaps = 40/172 (23%)
Query: 398 PTSPSLAIPH---PSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALS 454
P SPS P PS+ P + PSPP+ P+ SP T P P L+ A
Sbjct: 684 PVSPSATPPSQAPPSLAAPPLQV-PPSPPASPPM-------SPSATPPPQAPPPLA-APP 734
Query: 455 LGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVAS-------SSGSLRHRRPLISP- 506
L PS S P SP +P P V +A+ S + PL P
Sbjct: 735 LQVPPSPP---------ASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPP 785
Query: 507 --ARLNLKGQKLLLFPSPP----GEAPTTPSSSDEHSPHNGSLFTMEPPHVP 552
A L L PSPP G+AP +PS+S SP PP P
Sbjct: 786 PQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSP-----LATPPPQAP 832
Score = 37.0 bits (84), Expect = 0.056
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 23/163 (14%)
Query: 398 PTSPSLAIPH--PSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSL 455
P SPS P P + +P PSPP+ LP++ L + P + P+ L +L
Sbjct: 746 PMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMS--PLAKPPPQAPPALATPPLQ---AL 800
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAP-----------SVAGSVASSSGSLRHRRPLI 504
+ P+ S S P SPL +P P V S +S RRP
Sbjct: 801 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPT 860
Query: 505 SPARLNLKGQKLLLF-----PSPPGEAPTTPSSSDEHSPHNGS 542
++ G +L L P PP +P++ S + + H+ S
Sbjct: 861 PGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSS 903
Score = 35.8 bits (81), Expect = 0.12
Identities = 46/163 (28%), Positives = 60/163 (36%), Gaps = 23/163 (14%)
Query: 398 PTSP--SLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSL 455
P +P SL +P S A + +PP+ L P PS P L A +
Sbjct: 500 PQAPLSSLIMPPLETQSSLAPPSLQTPPA-------SLTTPPLENLPSLAPPPLQTASAP 552
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQK 515
T P L + P SPL +P P S+A+ P PA L
Sbjct: 553 LTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPP-------PQAPPA---LASPP 602
Query: 516 LLLFPSPPGEAPTTPSSSDEHSPHNGSLFTME-PPHVPRKPPL 557
L PSPP TP +P +L ++ PP P PPL
Sbjct: 603 LQGLPSPPLSPLATP---PPQAPPXLALPPLQAPPSPPASPPL 642
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 40.0 bits (92), Expect = 0.007
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 40/202 (19%)
Query: 398 PTSPSLAI-----PHPSVGGSPASLF---IPS----PPSFLPL-------ANQQLFRSP- 437
P++PS +I PHP+ +P+S +P+ PP+ P+ A + + R+P
Sbjct: 372 PSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAEKPIQRNPG 431
Query: 438 --RRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPL-----PSPAPSVAGSV 490
R PS+ P + + S IP+L R + S P+S P P +++ S
Sbjct: 432 MPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSP 491
Query: 491 ASSSGSLRHRRP---LISPARLNLKGQKLLLFPSPPGEAPTTPSS--SDEHSPHNGSLFT 545
A + GS R RP ++ P + P+ PG APT E S G
Sbjct: 492 APTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPT-PGSAPTGSKKPIGSEASKKAG---- 546
Query: 546 MEPPHVPRKP-PLQDVKHALDL 566
P PRKP PL+ K A D+
Sbjct: 547 --PKSSPRKPVPLRPGKAARDV 566
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 40.0 bits (92), Expect = 0.007
Identities = 52/181 (28%), Positives = 66/181 (36%), Gaps = 35/181 (19%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLA-----NQQLFRSPRRTS-PSSLPG-RLS 450
P + P P + SP + + PPS P A + Q+F R+ P S G LS
Sbjct: 658 PPQATTPQPSPGLASSPEKIVLGQPPSATPTAILTQDSLQMFLPQERSQQPLSAEGPHLS 717
Query: 451 RALSL---------GTIPSLTRADYFSLLSGSCPSSPLPSPAPSVA------GSVASSSG 495
S+ P+ A L + S P+PAP + G SSS
Sbjct: 718 VPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQIPAAAPLKGPGPSSSP 777
Query: 496 SLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKP 555
SL H+ PL L PSP PT P S P + S EPP P P
Sbjct: 778 SLPHQAPLGDSPHL----------PSPH---PTRPPSRPPSRPQSVSRPPSEPPLHPCPP 824
Query: 556 P 556
P
Sbjct: 825 P 825
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 39.7 bits (91), Expect = 0.009
Identities = 65/222 (29%), Positives = 87/222 (39%), Gaps = 40/222 (18%)
Query: 342 QHLQAASPSWLDTLKFS--TTSLCCLVGFTA-AVATRKATGPRRFRPRRFFP-------- 390
+H S S L+ L+ TT V F A A A +GP F+ RF P
Sbjct: 3007 EHRDYLSDSELNQLRLQGCTTPAGQFVDFPATAAAPATPSGPTAFQQPRFQPPAPQYSAG 3066
Query: 391 --GDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFR--------SPRRT 440
G + FP + P PS +PA S P+ L NQQ FR +P T
Sbjct: 3067 SGGPTQNGFPAHQAPTYPGPSTYPAPAFPPGASYPAEPGLPNQQAFRPTGHYAGQTPMPT 3126
Query: 441 SPSSL---------PGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVA 491
+ S+L P + R SL + +Y + S P S PS S +G A
Sbjct: 3127 TQSTLFPVPADSRAPLQKPRQTSLADLEQKVPTNYEVIASPVVPMSSAPSET-SYSGP-A 3184
Query: 492 SSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSS 533
SSG + + P + A G + + SP APT PS S
Sbjct: 3185 VSSGYEQGKVPEVPRA-----GDRGSVSQSP---APTYPSDS 3218
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 39.7 bits (91), Expect = 0.009
Identities = 55/232 (23%), Positives = 81/232 (34%), Gaps = 18/232 (7%)
Query: 346 AASPSWLDTLKFSTTSLCCLVGFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAI 405
A +P+ TL S+ S T ++ T GP + P S P
Sbjct: 1682 ALAPALAPTLGGSSPSQ------TLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLA 1735
Query: 406 PHPSVGGSPASLFIPSPP-----SFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPS 460
P P +G + P+PP P L +P +S S L + L+L P
Sbjct: 1736 PGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPV 1795
Query: 461 LTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFP 520
T + P+S SPA + V S+SG+ ++S ++ L
Sbjct: 1796 PTLGPAAAQTLALAPAS-TQSPASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTLTLR 1854
Query: 521 SPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPPLQDVKHALDLRSKLER 572
S P P+T +S P +PP PR P D R + ER
Sbjct: 1855 SGPPSPPSTATSFGGPRPRR------QPPPPPRSPFYLDSLEEKRKRQRSER 1900
Score = 36.6 bits (83), Expect = 0.073
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 27/150 (18%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSS--LPGRLSRALSL 455
P PSLA S S +L + + PS L++ Q P +P+S +PG L+ ++
Sbjct: 1488 PGPPSLAPSGASPSASALTLGLATAPS---LSSSQTPGHPLLLAPTSSHVPG-LNSTVAP 1543
Query: 456 GTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQK 515
P L A S L+ PS+P P+PA + + ASS+ + L +P Q
Sbjct: 1544 ACSPVLVPA---SALASPFPSAPNPAPAQASLLAPASSAS-----QALATPLAPMAAPQT 1595
Query: 516 LLLFPSP-------------PGEAPTTPSS 532
+L PSP PG AP SS
Sbjct: 1596 AILAPSPAPPLAPLPVLAPSPGAAPVLASS 1625
Score = 31.2 bits (69), Expect = 3.1
Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 20/162 (12%)
Query: 400 SPSLAI--PHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGT 457
+P AI P P+ +P + PSP + LA+ Q +PSS PG + S
Sbjct: 1592 APQTAILAPSPAPPLAPLPVLAPSPGAAPVLASSQT--PVPVMAPSSTPG--TSLASASP 1647
Query: 458 IPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLL 517
+P+ T +L+ S + LP+P PS S AS+ P ++P + L
Sbjct: 1648 VPAPT-----PVLAPSSTQTMLPAPVPSPLPSPAST--QTLALAPALAPTLGGSSPSQTL 1700
Query: 518 LF--PSPPGEAPT-----TPSSSDEHSPHNGSLFTMEPPHVP 552
+P G PT TP+SS +P PP P
Sbjct: 1701 SLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPPLGP 1742
Score = 30.4 bits (67), Expect = 5.3
Identities = 53/178 (29%), Positives = 62/178 (34%), Gaps = 29/178 (16%)
Query: 395 GLFPTSPSLAIPHPSVGGSPASLFIPSP---PSFLPLANQQLFRSPRRT----------- 440
GL P P P P G PA L P P P LP R+P T
Sbjct: 1320 GLTPVPPLAPAPRPPSSGLPAVL-NPRPTLTPGRLPTPTLGTARAPMPTPTLVRPLLKLV 1378
Query: 441 -SPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGS--L 497
SPS + + TI S S L G SSP+P P S S SS+ S L
Sbjct: 1379 HSPSPEVSASAPGAAPLTISSPLHVP--SSLPGPA-SSPMPIPNSSPLASPVSSTVSVPL 1435
Query: 498 RHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKP 555
P+ P L L P AP T S+S L ++ PP P P
Sbjct: 1436 SSSLPISVPTTLPAPASAPLTIPI---SAPLTVSASGP-----ALLTSVTPPLAPVVP 1485
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 39.7 bits (91), Expect = 0.009
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 18/159 (11%)
Query: 398 PTSPSLAIPHPSVGGSPASLF-IPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLG 456
PT+P+ +P P G + SL P+PP+ P + + P SP P +
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKG---GPATPSPKGAP------MPPA 1107
Query: 457 TIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKL 516
P + + P++P +P PS G +A+ P +P K
Sbjct: 1108 ATPPSPKGGLATPPHKGAPTTPAATP-PSPKGGLATPPPKGAPTTPAATPP-----SPKG 1161
Query: 517 LLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKP 555
L PP APTTP+++ SP G L T P P P
Sbjct: 1162 GLATPPPKGAPTTPAATPP-SP-KGGLATPSPKGAPTTP 1198
Score = 37.4 bits (85), Expect = 0.043
Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 398 PTSPSLAIPHPSVG-GSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLP-GRLSRALSL 455
PT P+ P P G +P+ P+PP+ P SP+ SP++ P + +
Sbjct: 986 PTPPAATPPSPKGGPATPSPKGAPTPPAVTP-------PSPKG-SPAATPFPKGASTPPA 1037
Query: 456 GTIPSLTRADYFSLLSGSCPSSP---LPSP-----APSVAGSVASSSGSLRHRRPLISPA 507
T PS + + L P++P LPSP PS+ G A + + P PA
Sbjct: 1038 ATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKG--APTPPAATPPSPKGGPA 1095
Query: 508 RLNLKGQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKP 555
+ KG P PP P +P PH G+ T P P P
Sbjct: 1096 TPSPKGA-----PMPPAATPPSPKGGLATPPHKGAPTT--PAATPPSP 1136
Score = 37.0 bits (84), Expect = 0.056
Identities = 48/163 (29%), Positives = 62/163 (38%), Gaps = 11/163 (6%)
Query: 398 PTSPSLAIPHPSVGGSPASLFIPSP---PSFLPLANQQLFRSPRRTSPSSLPGRLSRALS 454
P A P P +P + PSP P+ PL +P T PS G + S
Sbjct: 1019 PKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP-TTPAATLPSPKGGPATP--S 1075
Query: 455 LGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLR--HRRPLISPARLNLK 512
L P+ A S G SP +P P A + G H+ +PA
Sbjct: 1076 LKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPS 1135
Query: 513 GQKLLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKP 555
+ L P P G APTTP+++ SP G L T P P P
Sbjct: 1136 PKGGLATPPPKG-APTTPAATPP-SP-KGGLATPPPKGAPTTP 1175
Score = 36.6 bits (83), Expect = 0.073
Identities = 47/163 (28%), Positives = 67/163 (41%), Gaps = 33/163 (20%)
Query: 393 SAGLFPTSPSLAIPHPSV--GGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLS 450
S + P SP A P G + S +PP+ P++ L ++P ++P P S
Sbjct: 1404 SPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVS---LKKAPATSAPKGGPATPS 1460
Query: 451 RALSLG--TIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPAR 508
S G T+P++T P SP PAP VA+SS P +PA
Sbjct: 1461 ---SKGDPTLPAVT------------PPSPKEPPAPK---QVATSSS------PKKAPAT 1496
Query: 509 LNLKGQKLL--LFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPP 549
G L + PS P E P TPSS + +L + + P
Sbjct: 1497 PAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTP 1539
Score = 35.8 bits (81), Expect = 0.12
Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 7/131 (5%)
Query: 408 PSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADYF 467
PS G P + P P A +Q+ S + P + IPS +
Sbjct: 1459 PSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKE--- 1515
Query: 468 SLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAP 527
+ PSS AP+ + +L + LI PA +K P+P EAP
Sbjct: 1516 ---VPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPK-EAP 1571
Query: 528 TTPSSSDEHSP 538
TPSS + SP
Sbjct: 1572 ATPSSKEASSP 1582
Score = 29.6 bits (65), Expect = 9.0
Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 27/143 (18%)
Query: 388 FFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPG 447
F P +S + S A H SP P+P + PL+ + + P+ T
Sbjct: 835 FLPENSLSFQGSKDSPATTHSPTPPSPKGA--PTPSAVTPLSPKGVTLPPKETPT----- 887
Query: 448 RLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPA 507
PS+ + P++P P AP+++ + +S + P PA
Sbjct: 888 -----------PSVVNLPF----PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPA 932
Query: 508 RLNLKGQKLLLFPSPPGEAPTTP 530
+ KG P+PP P +P
Sbjct: 933 SPSPKGA-----PTPPAATPPSP 950
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.3 bits (90), Expect = 0.011
Identities = 51/218 (23%), Positives = 75/218 (34%), Gaps = 34/218 (15%)
Query: 364 CLVGFTAAVATRKATGPRRFRPRRFFPGDSAGLFPTSPSLAIPHPSVGGSPASLFIPSPP 423
CL+ T VA ++ GD G+ P+ +PH VG PAS P
Sbjct: 2461 CLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSV-PAPGVPHSDVGEPPASTGAQQPS 2519
Query: 424 SFLPLANQQLFRSPRRTSPSSLPGRLSRA-------------------------LSLGTI 458
+ L + RS +S SS S + ++L +
Sbjct: 2520 ALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRV 2579
Query: 459 PSLTRADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLL 518
PS T A ++ G P P+PA S +SSS S S + +
Sbjct: 2580 PSPTPAPKEAVREGRPPE---PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSS--- 2633
Query: 519 FPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPRKPP 556
S + ++ SSS SP + P P+KPP
Sbjct: 2634 --SSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPP 2669
Score = 38.1 bits (87), Expect = 0.025
Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 373 ATRKATGPRRFRPRRFFPGDSAGLFPTSPS--LAIPHPSVGGSPASLFIPSPPSFLPLAN 430
ATR + P R S G P +P+ LA H GGSP L +P S P+
Sbjct: 347 ATRPSPSPER---------SSTGPEPPAPTPLLAERH---GGSPQPL-ATTPLSQEPVNP 393
Query: 431 QQLFRSPRRTSPSSLPGRLSRALSLGTIPSLTRADYFSLLSGSCPSSPLPSPAPSVAGSV 490
R SP P +L ++ S + P + S + S P SP P+PAP +
Sbjct: 394 PSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREI 453
Query: 491 ASSSGS 496
+SS S
Sbjct: 454 SSSPTS 459
>gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]
Length = 1496
Score = 39.3 bits (90), Expect = 0.011
Identities = 62/249 (24%), Positives = 90/249 (36%), Gaps = 34/249 (13%)
Query: 407 HPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRLSRALSLGT---IPSLTR 463
H G S A ++ P PL Q + P+S PGRL ++ SLG+
Sbjct: 916 HQEAGSSQAEPYLERPSPTRPLQRQTTWAGRSLRDPASPPGRLVKSGSLGSARGAQPTVE 975
Query: 464 ADYFSLLSGSCPSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLN--LKGQKLLLFPS 521
A ++ P SP P GS++ S + P SP L Q
Sbjct: 976 AGVAHMIEALGVLEPRGSPVPWHDGSLSDLSLTGEEPLPGGSPGGSGSALSAQSTEALEG 1035
Query: 522 PPGEAPTTPSSSDE--------------------HSPHNGSLFTMEPPHVP---RKPPLQ 558
G P DE HSP + PP +P R+ P+
Sbjct: 1036 LSGRGPKAGGRQDEAGTPRRGLGARLQQLLTPSRHSPASRIPPPELPPDLPPPARRSPMD 1095
Query: 559 DVKHALDLRSKLERGSACSNRSIKKEDDSSQSSTCVVDTTTRGCSEEAATWRGRF-GPSL 617
+ H R + ++ S+ S+ E D S+SS + + + R SE + G F PSL
Sbjct: 1096 SLLHP---RERPGSTASESSASLGSEWDLSESS--LSNLSLRRSSERLSDTPGSFQSPSL 1150
Query: 618 VRGLLAVSL 626
L + SL
Sbjct: 1151 EILLSSCSL 1159
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 38.9 bits (89), Expect = 0.015
Identities = 52/162 (32%), Positives = 67/162 (41%), Gaps = 23/162 (14%)
Query: 392 DSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLP-GRLS 450
DS G +L P+VGGS + IPS P P+A+ F+ S S LP L
Sbjct: 997 DSTGTHQDGDTL----PTVGGSDPFVSIPSRPEQEPVADS--FQGSSVLSLSELPKAPLQ 1050
Query: 451 RALSLGTIPS------LTRADYFSLLSGSCPSSPLPS-----PAPSVAGS---VASSSGS 496
LS+ S L+ D +LL S P P + PA ++ S +A SSG
Sbjct: 1051 NGLSIPLSSSESSSTRLSPPDVSALLDISLPGPPEDALSQGEPATHISDSIIEIAISSGQ 1110
Query: 497 LRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSDEHSP 538
PL SPA+LN L PSP +S H P
Sbjct: 1111 YGEGVPL-SPAKLNGSDSSKSL-PSPSSSPQPHWIASPTHDP 1150
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 38.9 bits (89), Expect = 0.015
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 475 PSSPLPSPAPSVAGSVASSSGSLRHRRPLISPARLNLKGQKLLLFPSPPGEAPTTPSSSD 534
PS P V G+ + +G+LR + R GQ LL+ P PPG AP P
Sbjct: 97 PSVPDDFADKEVTGTSSLVNGNLRLYSS-VGDLRPGQYGQDLLIPPPPPGPAPGPPQDIS 155
Query: 535 EHSPHNGSLFTMEPPHVPRKPPL 557
E P GS P P PPL
Sbjct: 156 E--PPGGSPLPSPPSTAPPPPPL 176
Score = 29.6 bits (65), Expect = 9.0
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 396 LFPTSPSLAIPHPSV------GGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSSLPGRL 449
L P P P P GGSP +PSPPS P L P S + P +
Sbjct: 138 LIPPPPPGPAPGPPQDISEPPGGSP----LPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193
Query: 450 SRALS----LGTIPSLTRADYF----SLLSGSCPSSPLPSPAPSVAGS 489
ALS L + T D+ L + P P+P+PAP S
Sbjct: 194 LEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPAS 241
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,927,763
Number of Sequences: 37866
Number of extensions: 1596967
Number of successful extensions: 8282
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 7549
Number of HSP's gapped (non-prelim): 959
length of query: 642
length of database: 18,247,518
effective HSP length: 109
effective length of query: 533
effective length of database: 14,120,124
effective search space: 7526026092
effective search space used: 7526026092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.