Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 113417273
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113417273 PREDICTED: hypothetical protein [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168341 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|113417273 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|113416809 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 37 0.004
gi|21389577 hypothetical protein LOC146705 [Homo sapiens] 37 0.004
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 35 0.010
gi|153070260 myristoylated alanine-rich protein kinase C substra... 35 0.010
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 35 0.010
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 35 0.013
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 35 0.013
gi|117938768 GNAS complex locus alex [Homo sapiens] 35 0.017
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 35 0.017
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 35 0.017
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 34 0.022
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 34 0.022
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 34 0.022
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 34 0.022
gi|110832843 TBP-associated factor 4 [Homo sapiens] 34 0.022
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 34 0.022
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 34 0.022
gi|28557729 hypothetical protein LOC283687 [Homo sapiens] 34 0.022
gi|239582765 ral guanine nucleotide dissociation stimulator-like... 34 0.029
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 34 0.029
gi|41281612 zinc finger protein 828 [Homo sapiens] 34 0.029
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 34 0.029
gi|122937424 one cut homeobox 3 [Homo sapiens] 34 0.029
gi|38348332 killer cell lectin-like receptor subfamily G, member... 34 0.029
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 34 0.029
gi|30795231 brain abundant, membrane attached signal protein 1 [... 33 0.038
gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo ... 33 0.038
>gi|169168341 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 223 bits (568), Expect = 3e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60
MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP
Sbjct: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60
Query: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110
SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC
Sbjct: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110
>gi|113417273 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 223 bits (568), Expect = 3e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60
MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP
Sbjct: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60
Query: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110
SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC
Sbjct: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110
>gi|113416809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 223 bits (568), Expect = 3e-59
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60
MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP
Sbjct: 1 MSGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAP 60
Query: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110
SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC
Sbjct: 61 SASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESPVSC 110
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 21 PGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSAS--------------VEP 66
PGP+ S G P+ GR RS PS PPG HS + S V+
Sbjct: 11 PGPITSDPGPDPAPRGGRARSH---PSPPPGSHSLRYFYTAVSRPGLGEPRFISVGYVDD 67
Query: 67 QAWVRDERDAALARGRPSAPKTREQAP 93
+VR + D+A R P AP ++ P
Sbjct: 68 TQFVRFDSDSANPREEPRAPWMEQEGP 94
>gi|21389577 hypothetical protein LOC146705 [Homo sapiens]
Length = 525
Score = 36.6 bits (83), Expect = 0.004
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 20/117 (17%)
Query: 10 GARAPA-SASGEPGPLASLRGASPSL--ELGRPRSEV------------KAPSGPPGLHS 54
G +PA S EPGP A+L G S L + P S+V ++P+ G+ S
Sbjct: 353 GQLSPARGTSAEPGPTAALPGPSDLLTDAVPLPGSQVFLQPLSSTPVSSRSPAPSSGMPS 412
Query: 55 R--SSPAPSASVEPQAWVRDERDAALA---RGRPSAPKTREQAPGEKPLEVSWSRES 106
+P P AS P E +A LA R RP +P P +WSR+S
Sbjct: 413 SPVPTPPPDASPIPAPGDPSEAEARLAESRRWRPERIPGGTDSPKRGPSSCAWSRDS 469
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/72 (30%), Positives = 30/72 (41%)
Query: 7 RAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEP 66
R A P+ G PGP AS R AS S P +A + P +SP + ++P
Sbjct: 818 RPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPGAAGGLDP 877
Query: 67 QAWVRDERDAAL 78
Q R + L
Sbjct: 878 QDSARSRLSSNL 889
Score = 26.2 bits (56), Expect = 6.0
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 10/88 (11%)
Query: 13 APASASGEPGPLASLRGASPSLEL-------GRPRSEVKAPSGPPGLHSRSSPAPSASVE 65
APA+AS P P AS GA S G P + + P+ P SR+S SAS
Sbjct: 766 APAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSAS-- 823
Query: 66 PQAWVRDERDAALARGRPSAPKTREQAP 93
Q + A RP++ T P
Sbjct: 824 -QPSLPHGAPGPAASTRPASSSTPRLGP 850
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 34 LELGRPRSEVKAPSGP-PGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQA 92
L LG PR + P GP P S P P++ A R R + G P+AP
Sbjct: 750 LALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYG-GLPAAPLAGPAL 808
Query: 93 PGEK 96
P +
Sbjct: 809 PARR 812
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 35.4 bits (80), Expect = 0.010
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 18/114 (15%)
Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELG--------------RPRSEVKAPS 47
+ E G+ E A A+A+ E G + + A+P E +P+ AP
Sbjct: 188 AAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPE 247
Query: 48 GPPGL-HSRSSPAPSASVEPQAWVRDERDAAL---ARGRPSAPKTREQAPGEKP 97
PP ++++ PS E +A AA + P AP +E AP E+P
Sbjct: 248 KPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEP 301
Score = 33.9 bits (76), Expect = 0.029
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 4 ERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSAS 63
E +A G+ APA+ EP S + + E G P + AP + +PA +
Sbjct: 56 EELQANGS-APAADKEEPAAAGSGAASPSAAEKGEPAAAA-APEAGASPVEKEAPAEGEA 113
Query: 64 VEPQAWVRDERDAALARGRPSAPKTREQA 92
EP + E +AA A S+PK + A
Sbjct: 114 AEPGSPTAAEGEAASAASSTSSPKAEDGA 142
Score = 29.3 bits (64), Expect = 0.71
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 7 RAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEP 66
+ G +PA+A G++P+ + P + A SG + P+A+ P
Sbjct: 40 KVNGDASPAAAESGAKEELQANGSAPAADKEEPAA---AGSGAASPSAAEKGEPAAAAAP 96
Query: 67 QAWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSRESP 107
+A A A G + P + A GE S S SP
Sbjct: 97 EAGASPVEKEAPAEGEAAEPGSPTAAEGEAASAAS-STSSP 136
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 35.4 bits (80), Expect = 0.010
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 7 RAEGARAPA-SASGEPG-PLASLRGASPSLELGRPRSEVKAPSGPPG-LHSRSSPAPSAS 63
R EGA P+ SA G+P P RG GRPR + + P+G P R P S +
Sbjct: 4 RGEGAGQPSTSAQGQPAAPAPQKRGR------GRPRKQQQEPTGEPSPKRPRGRPKGSKN 57
Query: 64 VEPQAWVRDERDAA---LARGRPS--APKTREQAPGEKPLEVSWSRES 106
P + + +A RGRP + ++ P ++ E + S+ES
Sbjct: 58 KSPSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQES 105
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 12 RAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGP-PGLHSRSSPAPSASVEPQAWV 70
RA A+ G GP +P++ GR ++ P PG S + +P+A V
Sbjct: 108 RAGAAPRGPGGP-----ARTPAVRAGRRAADGPGEEAPAPGRARFSGLSQPRGPQPRAAV 162
Query: 71 RDERDAALARGRPSAPKTREQAPGEKP 97
R R AL RG + P E+ PG +P
Sbjct: 163 RPRRGGALPRGTGAVP---ERGPGTEP 186
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPA-PS 61
G RG A G SA G P+ S GASP P+ + PPG+ SRS A PS
Sbjct: 794 GSRGPAPGPPPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRAPPGVPSRSGQASPS 853
Query: 62 ASVEPQ 67
P+
Sbjct: 854 RPESPR 859
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 34.7 bits (78), Expect = 0.017
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 10 GARAPASASGEPGPLASL----RGASPSLELGRPRSEVKAPS-GPPGL-------HSRSS 57
G++AP++A P L+ L R A+P PRS + AP G L SR +
Sbjct: 214 GSQAPSAA--HPKRLSDLLLTSRAAAPGWRSPDPRSRLAAPPLGSTTLPSTWTAPQSRLT 271
Query: 58 PAPSASVEPQAWVRDERDAALARGR-----PSAPKTREQAP--GEKPLEVSWSRESPV 108
PS S EPQ ++RD L R + P P+ E+ P G PL + P+
Sbjct: 272 ARPSRSPEPQIRESEQRDPQLRRKQQRWKEPLMPRREEKYPLRGTDPLPPGQPQRIPL 329
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 34.7 bits (78), Expect = 0.017
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 37 GRPRSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQAP 93
G PR E P GL SR S APSA W R ER A + P R P
Sbjct: 5 GEPRREEPPPQPSAGLRSRESGAPSAG----GWERAERGRGAAARPATGPPPRRIGP 57
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPA 59
GERG EG R P G PGP + A PS E G P + +G PGL + A
Sbjct: 268 GERG-PEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPGKD--GQNGVPGLDGQKGEA 321
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 10 GARAPASASGEPGPLASLRGASPSLELGRPRSE-VKAPSGPPGLHSRSSPAPSASVEPQA 68
G PA G PG + + A P G + V+ GPPG + PA + + Q
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQP 394
Query: 69 WVRDERDAALARGRPSAPKTR----EQAPGEKP 97
+ A G P P R Q PG P
Sbjct: 395 GAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427
Score = 33.1 bits (74), Expect = 0.049
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELGR--PRSEVKAPSGPPGLHSRSSPA 59
SGE G A G++ A GEPGP+ P+ E G+ R E P+G PG
Sbjct: 433 SGEPG-APGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGE-PGPTGLPGPPGERGGP 490
Query: 60 PSASVEPQAWVRDERDAALARGRPSAPKTREQAPGE 95
S V + A RG P P + +PGE
Sbjct: 491 GSRGFPGADGVAGPKGPAGERGSP-GPAGPKGSPGE 525
Score = 30.8 bits (68), Expect = 0.24
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 2 SGERGRAEGARAPASASGEPGP--LASLRG--ASPSLELGRPRSEVKAPSGPPGLHSRSS 57
+GE+G + GA PA A G PGP +A RG P R + PSG PG S
Sbjct: 931 AGEKG-SPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSG 989
Query: 58 PA----PSASVEPQAWVRDERDAALARGRPSAPKT-----REQAPGEK 96
+ P + P ++ GR AP R+ +PG K
Sbjct: 990 ASGERGPPGPMGPPGLAGPPGES----GREGAPGAEGSPGRDGSPGAK 1033
Score = 30.4 bits (67), Expect = 0.32
Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 21/93 (22%)
Query: 3 GERGRA-----EGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSS 57
GE GR GA+ + G PGP P+ + GRP P GPPG ++
Sbjct: 524 GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP-----GPPGPPGARGQAG 578
Query: 58 ----PAPSASVEPQAWVRDERDAALARGRPSAP 86
P P + E A RG P P
Sbjct: 579 VMGFPGPKGAA-------GEPGKAGERGVPGPP 604
Score = 29.3 bits (64), Expect = 0.71
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSR-SSPAP 60
+G +G A G PA +G PGP+ ++ +P + R + +G PG R P P
Sbjct: 832 AGAKGDA-GPPGPAGPAGPPGPIGNV--GAPGAKGARGSAGPPGATGFPGAAGRVGPPGP 888
Query: 61 SASVEP 66
S + P
Sbjct: 889 SGNAGP 894
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 2 SGERGRA--EGARAPASASGEPGPLASLRGASPSLELGRPRSE-------VKAPSGPPGL 52
SG G A GAR GEPGP A P G+P ++ K +GPPG
Sbjct: 784 SGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP 843
Query: 53 HSRSSP 58
+ P
Sbjct: 844 AGPAGP 849
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSP 58
G +G A G+ P A+G PG + PS G P P GP G P
Sbjct: 860 GAKG-ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPP-----GPPGPAGKEGGKGP 909
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 34.3 bits (77), Expect = 0.022
Identities = 32/100 (32%), Positives = 37/100 (37%), Gaps = 22/100 (22%)
Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSR-SSPAPS 61
GERG +G P GEPGP L P P GPPG+ P P
Sbjct: 661 GERGD-DGEVGPRGLPGEPGPRGLLGPKGP-----------PGPPGPPGVTGMDGQPGPK 708
Query: 62 ASVEPQAWVRDERDAALARGRPSA-----PKTREQAPGEK 96
+V PQ E +G P A P+ PGEK
Sbjct: 709 GNVGPQG----EPGPPGQQGNPGAQGLPGPQGAIGPPGEK 744
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 3 GERGRA--EGARAPASASGEPGPLASLRGASPSLELG-RPRSEVKAPSGPPGLHSRSSPA 59
G+RG G R P +G+PGP + G P+ G R + + P+G PG P
Sbjct: 910 GQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPP 969
Query: 60 PSASVEPQAWVRDERDAALARGRPSAP 86
+ R E G P P
Sbjct: 970 GKDGLPGHPGQRGETGFQGKTGPPGPP 996
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 18 SGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSP 58
+G GP+ S + + L + R ++ P+GP GL R P
Sbjct: 532 AGSKGPMVSAQESQAQAILQQARLALRGPAGPMGLTGRPGP 572
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 9 EGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPG 51
EG P +G PG A P GRP P GPPG
Sbjct: 1077 EGPPGPPGPAGSPGERGPAGAAGPIGIPGRP-----GPQGPPG 1114
Score = 26.6 bits (57), Expect = 4.6
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPS--GPPGLHSRSSPAP 60
GERG +G P+ A+G PGP P G P V P GPPG P P
Sbjct: 1306 GERGE-KGESGPSGAAGPPGPKGPPGDDGPK---GSP-GPVGFPGDPGPPG-----EPGP 1355
Query: 61 SASVEPQAWVRDERD-------AALARGRPSAPKTREQAPG 94
+ P D+ + PS P + PG
Sbjct: 1356 AGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPG 1396
Score = 26.6 bits (57), Expect = 4.6
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 3 GERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSA 62
GE G A G P G+ G P+ E G PSGPPG R P P A
Sbjct: 1351 GEPGPA-GQDGPPGDKGDDGEPGQTGSPGPTGEPG--------PSGPPG--KRGPPGP-A 1398
Query: 63 SVEPQAWVRDERDAALARGRP--SAPKTREQAPGE 95
E + + + A G P + P + APG+
Sbjct: 1399 GPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGK 1433
>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 34.3 bits (77), Expect = 0.022
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 4 ERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSS---PAP 60
+RGR G+ P SAS EP PLA+ ++ RP P+GP G SRS PA
Sbjct: 2 DRGRPAGS--PLSASAEPAPLAA------AIRDSRPGRTGPGPAGPGG-GSRSGSGRPAA 52
Query: 61 SASVEPQAWVRDERDA--ALARGRPSAP 86
+ + ++ V+ R A L R PS P
Sbjct: 53 ANAARERSRVQTLRHAFLELQRTLPSVP 80
>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 34.3 bits (77), Expect = 0.022
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 4 ERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSS---PAP 60
+RGR G+ P SAS EP PLA+ ++ RP P+GP G SRS PA
Sbjct: 2 DRGRPAGS--PLSASAEPAPLAA------AIRDSRPGRTGPGPAGPGG-GSRSGSGRPAA 52
Query: 61 SASVEPQAWVRDERDA--ALARGRPSAP 86
+ + ++ V+ R A L R PS P
Sbjct: 53 ANAARERSRVQTLRHAFLELQRTLPSVP 80
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 34.3 bits (77), Expect = 0.022
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 8 AEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSAS 63
A A PA SG+PGP A+ +P ++ P+ V+A PP + ++ P+++
Sbjct: 316 APAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQA--APPAAQTLAASGPAST 369
Score = 28.9 bits (63), Expect = 0.93
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 6 GRAEGARAPASASGEPGPLASLRGASPS-----------LELGRPRSEVKAPSGPPGLHS 54
G+ G A + +G L S A+P+ L L +P + PP + +
Sbjct: 187 GKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGA 246
Query: 55 RSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQAPG 94
+ PAP+A P A AA P AP T + PG
Sbjct: 247 AAPPAPAAP-SPPAAPAPAAPAAAPPPPPPAPATLARPPG 285
>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
sapiens]
Length = 406
Score = 34.3 bits (77), Expect = 0.022
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 19 GEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRDERDAAL 78
G+PGP S+ PS +L + + P GPPG R + ER A
Sbjct: 277 GQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGS------------KGERGAPG 324
Query: 79 ARGRPSAP 86
RG P P
Sbjct: 325 PRGSPGPP 332
>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
Length = 1164
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 3 GERGRA--EGARAPASASGEPGPLASLRGASPSLELGRP--RSEVKAPSGPP-GLHSRSS 57
G+R R EG PA A EPGP P+ G +P GPP GL + +
Sbjct: 361 GKRSRRSLEGGGCPARAP-EPGPTGPASPVGPTSSTGPALLTGPASSPVGPPSGLQASVN 419
Query: 58 PAPSASVEPQAWVRDERDAALAR 80
P+ SV P A ER AR
Sbjct: 420 LFPTISVAPSADTSSERSIYKAR 442
>gi|28557729 hypothetical protein LOC283687 [Homo sapiens]
Length = 130
Score = 34.3 bits (77), Expect = 0.022
Identities = 32/94 (34%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 7 RAEGARAPASASGEPGP-LASLRGASPS-LELGRPRSEVKAPSGPPGLHSRSSPAPSASV 64
RA+ P S G P LASL +P+ L R R V A SGP LH P
Sbjct: 45 RAQHPEGPQSREGATSPVLASLEPPTPTDLPSARARPRVPAESGPGWLHKARRPTRGIL- 103
Query: 65 EPQAWVRDERDAALARGRPSAPKTREQAPGEKPL 98
RD RG P+ P+ APG L
Sbjct: 104 ---------RDVLRHRGVPAQPR---PAPGAHQL 125
>gi|239582765 ral guanine nucleotide dissociation stimulator-like 3
isoform 1 [Homo sapiens]
Length = 716
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 9 EGARAPASASGEPGPLASLRGASPSLELGRPRSEVK---APSGPPGLHSRSSPAPSASVE 65
E + +P+ + G+P S SPS+ G P S + AP+G P S PS +
Sbjct: 532 EKSSSPSGSPGDPSSPTSSLCISPSVSPGSPPSSPRSRDAPAGSPPA-SPGPQGPSTKLP 590
Query: 66 PQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVS 101
+ R AL G P P +Q+ + + VS
Sbjct: 591 LSLDLPSPRPFALPLGSPRIPLPAQQSSEARVIRVS 626
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 33.9 bits (76), Expect = 0.029
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Query: 1 MSGERGRAEGARAPASASGE-------PGPLASLRGASPSLELGRPRSEVKAPSGP---- 49
+SG+ A+ A APA++SG P P SP E + + PS P
Sbjct: 2321 VSGQTDAAKNAAAPAASSGSGTSTPLIPSPKPEPEKTSPKPEYPAEKPKQSDPSPPSQGT 2380
Query: 50 ----PGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPKTREQAPGEKPLEVS 101
P + S P +++ +PQ + + L PSA +T + PL++S
Sbjct: 2381 KPALPLASTSSDPPQASTAQPQPQPQPPKQPQLIGRPPSASQTPVPS---SPLQIS 2433
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 11 ARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPS--GPPGLHSRSSPAPSASVEPQA 68
A P+ +P P+ S +L +P+ + P GPP S SP +AS EP
Sbjct: 200 APVPSPEPQKPAPV-SPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWG 258
Query: 69 WVRDERDAALARGRPSAPKTREQAPGEKP 97
+ R ++P+ R+ +P E P
Sbjct: 259 PSPAASPESRKSARTTSPEPRKPSPSESP 287
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 33.9 bits (76), Expect = 0.029
Identities = 39/115 (33%), Positives = 46/115 (40%), Gaps = 24/115 (20%)
Query: 4 ERGRAEGARAP-ASASGEPG-PLA--SLRGASPSLELGRPRSEVKAPSGPPGLHS----- 54
ER RA G R A ASG G P A + R S + LGR + PSGPP +
Sbjct: 395 ERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASA---VPSGPPKYPTAEREE 451
Query: 55 ------RSSPAPSASVEPQAWVRDERDAALA------RGRPSAPKTREQAPGEKP 97
R PAP+ + + R R A R RP AP R PG P
Sbjct: 452 PRPPRPRRGPAPTLAAQAAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGPSP 506
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 10 GARAPASASGEPGPLASLRGASPSLELGRPRSEVKAPS------GPPGLHSRSSPAPSAS 63
G PA S PL+ L A P G P+ P GPPG + P A+
Sbjct: 189 GKELPAMGS----PLSPLPNALPPALHGAPQPPPPPPPPPLAAYGPPGHLAGDKLLPPAA 244
Query: 64 VEPQAWVRDERDAALARGRP 83
EP A + + ALARG P
Sbjct: 245 FEPHAALLGRAEDALARGLP 264
>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
[Homo sapiens]
Length = 409
Score = 33.9 bits (76), Expect = 0.029
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 13 APASASGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRD 72
AP +G P+ + P+LE + ++V+ P GP SSP+P+ +VE A
Sbjct: 8 APGGQAGAELPMEPVGSLVPTLEQPQVPAKVRQPEGP-----ESSPSPAGAVEKAAGAGL 62
Query: 73 ERDAALARGRPSAPKTREQAPGEKPLEVSW 102
E + + P R +P PL + +
Sbjct: 63 EPSS-----KKKPPSPRPGSPRVPPLSLGY 87
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 29 GASPSLELGRP-RSEVKAPSGPPGLHSRSSPAPSASVEPQAWVRDERDAALARGRPSAPK 87
G+S S E RP RS VK +G G R SP+ SAS P+ ++ R PS P
Sbjct: 497 GSSSSSEDERPKRSHVK--NGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPP 554
Query: 88 T-REQAPGEKP 97
T R ++P P
Sbjct: 555 TRRRRSPSPAP 565
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 18 SGEPGPLASLRGASPSLELGRPRSEVKAPSGPPGLHSRSSPAPSASVEPQA----W--VR 71
S P P + ASPS + R S ++ SG P ++ PAP + V+ Q+ W
Sbjct: 725 SRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAV 784
Query: 72 DERDAALARGRPSAPKTREQAPGEK 96
+ A PS P+ +Q G K
Sbjct: 785 PVKKAKSPTPSPSPPRNSDQEGGGK 809
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 25 ASLRGASPSLELGRPRSEVKAP----SGPPGLHSRSSPAPS 61
ASL G+S S R RS K P S PP R SP+ S
Sbjct: 353 ASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSAS 393
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 33.5 bits (75), Expect = 0.038
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 26/118 (22%)
Query: 7 RAEGARAPASASGEPGPLAS-------------------LRGASPSLELGRPRSEVKAPS 47
+AE +AP PGP A G PS E G P+ + +AP+
Sbjct: 97 KAEPPKAPEQEQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPK-KTEAPA 155
Query: 48 GPPGLHSRSSPAPSASVEP---QAWVRDERDAALARGRPSAPKTR---EQAPGEKPLE 99
P ++S AP++ +P +A + A S PK + A KP+E
Sbjct: 156 APAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPAASAEEPKPVE 213
>gi|239745177 PREDICTED: hypothetical protein XP_002343381 [Homo
sapiens]
Length = 252
Score = 33.5 bits (75), Expect = 0.038
Identities = 35/116 (30%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 2 SGERGRAEGARAPASASGEPGPLASLRGASPSLELGRPRSEVKAP--------SGPPGLH 53
+G G A + PA SG+ P L A+ S GRPR+ AP SG GL
Sbjct: 131 AGAAGAARAPKPPAPGSGQALPADPLLQAAASTLAGRPRAPPPAPAAGQRGLGSGALGLG 190
Query: 54 SRSSPAPSASVEPQ-----AWVRDERDAALARGRPSAPKTREQAPGEKPLEVSWSR 104
R A + P+ W L GR RE A P EV R
Sbjct: 191 RREKLAARPAATPRRASRPPWQGCRGARGLGGGR---GPLREDAAALLPQEVQQER 243
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.124 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,322,565
Number of Sequences: 37866
Number of extensions: 414859
Number of successful extensions: 2715
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 545
Number of HSP's that attempted gapping in prelim test: 2120
Number of HSP's gapped (non-prelim): 1129
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.