Search of human proteins with 113416043

Search of human proteins with 113416043

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]
         (171 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169166639 PREDICTED: hypothetical protein [Homo sapiens]           357   3e-99
gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]           357   3e-99
gi|113415531 PREDICTED: hypothetical protein [Homo sapiens]           357   3e-99
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]            44   7e-05
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]            44   7e-05
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ...    35   0.024
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]            35   0.024
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ...    35   0.024
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ...    35   0.024
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ...    34   0.054
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ...    34   0.054
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     33   0.092
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]            33   0.092
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]            33   0.092
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]            33   0.092
gi|156938257 leucine rich repeat containing 16B [Homo sapiens]         33   0.16 
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ...    32   0.35 
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ...    32   0.35 
gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo ...    32   0.35 
gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo ...    32   0.35 
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]            31   0.46 
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ...    31   0.46 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    31   0.59 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    31   0.59 
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       31   0.59 
gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]           31   0.59 
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]            31   0.59 
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]            31   0.59 
gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]           31   0.59 
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ...    31   0.59 

>gi|169166639 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score =  357 bits (916), Expect = 3e-99
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG 60
           MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG
Sbjct: 1   MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG 60

Query: 61  RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG 120
           RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG
Sbjct: 61  RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG 120

Query: 121 ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR 171
           ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR
Sbjct: 121 ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR 171


>gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score =  357 bits (916), Expect = 3e-99
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG 60
           MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG
Sbjct: 1   MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG 60

Query: 61  RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG 120
           RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG
Sbjct: 61  RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG 120

Query: 121 ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR 171
           ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR
Sbjct: 121 ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR 171


>gi|113415531 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score =  357 bits (916), Expect = 3e-99
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG 60
           MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG
Sbjct: 1   MQTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGG 60

Query: 61  RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG 120
           RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG
Sbjct: 61  RDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHHSGFPERGWPAG 120

Query: 121 ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR 171
           ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR
Sbjct: 121 ETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRLEVR 171


>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 49/162 (30%), Positives = 61/162 (37%), Gaps = 6/162 (3%)

Query: 2   QTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGGR 61
           + Q  AR+    G  +R    G     +     G G   +   G+ G   ARG ARAG  
Sbjct: 29  EVQGLARAGLAAGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAGP- 87

Query: 62  DGSWATAPPWRGIRAESAWVARVSAPRGASSFL----SPRFRPGWGEALLHHSGFPERGW 117
           D     A   R  RA++  + R +A  G+  F     SPR        L  H   P +GW
Sbjct: 88  DAQLRAARTHRA-RAQTPQLRREAACAGSFFFRKCRQSPRSHGQPFPQLRSHWQAPRQGW 146

Query: 118 PAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCG 159
           PA E   R P RR   A     G R AP      G A    G
Sbjct: 147 PAQEGGGRRPSRREEAAALAGGGKRTAPGLRGRGGRAAAGQG 188


>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 202

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 49/162 (30%), Positives = 61/162 (37%), Gaps = 6/162 (3%)

Query: 2   QTQPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGGR 61
           + Q  AR+    G  +R    G     +     G G   +   G+ G   ARG ARAG  
Sbjct: 29  EVQGLARAGLATGKGQRPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAGP- 87

Query: 62  DGSWATAPPWRGIRAESAWVARVSAPRGASSFL----SPRFRPGWGEALLHHSGFPERGW 117
           D     A   R  RA++  + R +A  G+  F     SPR        L  H   P +GW
Sbjct: 88  DAQLRAARTHRA-RAQTPQLRREAACAGSFFFRKCRQSPRSHGQPFPQLRSHWQAPRQGW 146

Query: 118 PAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCG 159
           PA E   R P RR   A     G R AP      G A    G
Sbjct: 147 PAQEGGGRRPSRREEAAALAGGGKRTAPGRRGRGGRAAAGQG 188


>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
           sapiens]
          Length = 239

 Score = 35.4 bits (80), Expect = 0.024
 Identities = 39/103 (37%), Positives = 47/103 (45%), Gaps = 26/103 (25%)

Query: 4   QPRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDG 63
           +PR  S++R GG       G S PG   RP G          S  R  ARG+  +GG   
Sbjct: 101 RPRQASQTRGGGG------GPSLPGPAGRPSG---------RSRSRVGARGRLPSGG--- 142

Query: 64  SWATAPPWRGIRAESAW--VAR---VSAPR--GASSFLSPRFR 99
           S    PP R + A SAW  VAR   +S PR   A  F +PR R
Sbjct: 143 SHLPQPP-RSLAAASAWQAVARELGLSGPRPTEAPPFPAPRVR 184


>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 236

 Score = 35.4 bits (80), Expect = 0.024
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 7   ARSRSREGGSERRVPLGLSAPGEMDRP-VGVGVGWQTVVGSIGRARARGQARAGGRDGSW 65
           A++R   GG ++    G  A G+ DRP  G G G     G  GRA  R +A  G    SW
Sbjct: 161 AQARPGPGGQQQG---GHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217

Query: 66  ATAPPWRG 73
            T P  RG
Sbjct: 218 RTRPGGRG 225


>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
           sapiens]
          Length = 236

 Score = 35.4 bits (80), Expect = 0.024
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 7   ARSRSREGGSERRVPLGLSAPGEMDRP-VGVGVGWQTVVGSIGRARARGQARAGGRDGSW 65
           A++R   GG ++    G  A G+ DRP  G G G     G  GRA  R +A  G    SW
Sbjct: 161 AQARPGPGGQQQG---GHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217

Query: 66  ATAPPWRG 73
            T P  RG
Sbjct: 218 RTRPGGRG 225


>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
           sapiens]
          Length = 236

 Score = 35.4 bits (80), Expect = 0.024
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 7   ARSRSREGGSERRVPLGLSAPGEMDRP-VGVGVGWQTVVGSIGRARARGQARAGGRDGSW 65
           A++R   GG ++    G  A G+ DRP  G G G     G  GRA  R +A  G    SW
Sbjct: 161 AQARPGPGGQQQG---GHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217

Query: 66  ATAPPWRG 73
            T P  RG
Sbjct: 218 RTRPGGRG 225


>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
           sapiens]
          Length = 229

 Score = 34.3 bits (77), Expect = 0.054
 Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 28  GEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGSWATAPPWRGIRAESAWVARVSAP 87
           G   RP+    G Q   GS  R+  R      GR    A+ PP    R E         P
Sbjct: 12  GGTPRPLPASAGAQ---GSQARSGLRLCRTTQGRPAGGASPPPSPRSRPEGP-----GPP 63

Query: 88  RGASSFLSPRFRPGWGEALLHHSGFPERGWPAGETEARD--PDRRLHCATRVEIGARGAP 145
           R A+    P  R   G +    +G  +R  P      RD  P R LH  TR+   ARG P
Sbjct: 64  RPAT----PSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARGPP 119

Query: 146 SATREP 151
           + +R P
Sbjct: 120 APSRGP 125


>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
           sapiens]
          Length = 229

 Score = 34.3 bits (77), Expect = 0.054
 Identities = 39/126 (30%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 28  GEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGSWATAPPWRGIRAESAWVARVSAP 87
           G   RP+    G Q   GS  R+  R      GR    A+ PP    R E         P
Sbjct: 12  GGTPRPLPASAGAQ---GSQARSGLRLCRTTQGRPAGGASPPPSPRSRPEGP-----GPP 63

Query: 88  RGASSFLSPRFRPGWGEALLHHSGFPERGWPAGETEARD--PDRRLHCATRVEIGARGAP 145
           R A+    P  R   G +    +G  +R  P      RD  P R LH  TR+   ARG P
Sbjct: 64  RPAT----PSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARGPP 119

Query: 146 SATREP 151
           + +R P
Sbjct: 120 APSRGP 125


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 33.5 bits (75), Expect = 0.092
 Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 110 SGFP-ERGW---PAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGE 160
           SG P ERG    P G+ E  +P  R         GARGAP A   PGPA G+ G+
Sbjct: 639 SGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPA-GATGD 692



 Score = 30.0 bits (66), Expect = 1.0
 Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 45  GSIGRARARGQARAGGRDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGE 104
           G  G A ARG A   G+ G     P   G   E      V  P+GA  F      PG+ +
Sbjct: 124 GQTGPAGARGPAGPPGKAGEDGH-PGKPGRPGERG----VVGPQGARGFPGTPGLPGF-K 177

Query: 105 ALLHHSGFPE-RGWPAGETEARDPDRRLHCATRVEIGARGAP---SATREPGP--ARGSC 158
            +  H+G    +G P       +P       T  + GARG P        PGP  ARGS 
Sbjct: 178 GIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSD 237

Query: 159 GEL 161
           G +
Sbjct: 238 GSV 240


>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 33.5 bits (75), Expect = 0.092
 Identities = 50/178 (28%), Positives = 66/178 (37%), Gaps = 32/178 (17%)

Query: 3   TQPRARSRSREG-GSERRVPLGLSAPGEMDRPVG-------------VGVGWQTVVGSIG 48
           T  RAR+  ++G G  RR      + G     +G              G G   +V  +G
Sbjct: 57  TPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLG 116

Query: 49  RARARGQARAGGRDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGW--GEAL 106
            A  RG   AG  +   A++PP    R +   +     P G +S  +PR  PG   G  L
Sbjct: 117 HAGERGSPGAGDVNPVSASSPPG---RPDPLLLTTFVFPPGKTS--APRPSPGGRRGRPL 171

Query: 107 -------LHHSGFPERGWPAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGS 157
                  L+    P    P G   A    RR   A+R     R APS  R  G  RGS
Sbjct: 172 GAARGTGLNPGLSPRLQEPRGHQSA----RRTDTASRAGWATRRAPSRRRNFGAPRGS 225


>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 33.5 bits (75), Expect = 0.092
 Identities = 50/178 (28%), Positives = 66/178 (37%), Gaps = 32/178 (17%)

Query: 3   TQPRARSRSREG-GSERRVPLGLSAPGEMDRPVG-------------VGVGWQTVVGSIG 48
           T  RAR+  ++G G  RR      + G     +G              G G   +V  +G
Sbjct: 57  TPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLG 116

Query: 49  RARARGQARAGGRDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGW--GEAL 106
            A  RG   AG  +   A++PP    R +   +     P G +S  +PR  PG   G  L
Sbjct: 117 HAGERGSPGAGDVNPVSASSPPG---RPDPLLLTTFVFPPGKTS--APRPSPGGRRGRPL 171

Query: 107 -------LHHSGFPERGWPAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGS 157
                  L+    P    P G   A    RR   A+R     R APS  R  G  RGS
Sbjct: 172 GAARGTGLNPGLSPRLQEPRGHQSA----RRTDTASRAGWATRRAPSRRRNFGAPRGS 225


>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 33.5 bits (75), Expect = 0.092
 Identities = 50/178 (28%), Positives = 66/178 (37%), Gaps = 32/178 (17%)

Query: 3   TQPRARSRSREG-GSERRVPLGLSAPGEMDRPVG-------------VGVGWQTVVGSIG 48
           T  RAR+  ++G G  RR      + G     +G              G G   +V  +G
Sbjct: 57  TPGRARAAPQQGDGGARRERAAAESLGTQSATLGPRRGGLRSRTDPAFGAGPLPLVSRLG 116

Query: 49  RARARGQARAGGRDGSWATAPPWRGIRAESAWVARVSAPRGASSFLSPRFRPGW--GEAL 106
            A  RG   AG  +   A++PP    R +   +     P G +S  +PR  PG   G  L
Sbjct: 117 HAGERGSPGAGDVNPVSASSPPG---RPDPLLLTTFVFPPGKTS--APRPSPGGRRGRPL 171

Query: 107 -------LHHSGFPERGWPAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGS 157
                  L+    P    P G   A    RR   A+R     R APS  R  G  RGS
Sbjct: 172 GAARGTGLNPGLSPRLQEPRGHQSA----RRTDTASRAGWATRRAPSRRRNFGAPRGS 225


>gi|156938257 leucine rich repeat containing 16B [Homo sapiens]
          Length = 1372

 Score = 32.7 bits (73), Expect = 0.16
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 63   GSWATAPPWRGI--------RAESAW-VARVSAPRGASSFLSPRFRPGWGEALLHHSGFP 113
            GSW   PP +          RAE+ W +A  SAP  +    SP  + G  E     + FP
Sbjct: 1200 GSWKPPPPPQSTKPSFSAMRRAEATWHIAEESAPNHSCQSPSPASQDGEEEK--EGTLFP 1257

Query: 114  ERGWPAGETEARDP 127
            ER  PA   + +DP
Sbjct: 1258 ERTLPARNAKLQDP 1271


>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
           sapiens]
          Length = 330

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 44/144 (30%), Positives = 54/144 (37%), Gaps = 31/144 (21%)

Query: 45  GSIGRARARGQARAGGRDGSWATAPPWRGIRAE----------SAWVARVSAPRGASSFL 94
           G+ G    RG A AGG  GS    PPWR +R E          +  V R S P GA    
Sbjct: 70  GTAGGGGERG-APAGGARGSGGGPPPWR-LRNEVSPKASPPRPTCSVCRKS-PSGAEMDR 126

Query: 95  SPR------------FRPGWGEALLHHSGFPERGWPAGETEARDPDRRLHCATRVEI--G 140
           +PR            F  G  E     S  P RG    +    D  R      R EI   
Sbjct: 127 APRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTH 186

Query: 141 ARGAPSATREPGPARGSCGELASG 164
           +R  P+ ++     RG+CG   SG
Sbjct: 187 SRSGPTGSQ----TRGNCGAAGSG 206


>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
           sapiens]
          Length = 330

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 44/144 (30%), Positives = 54/144 (37%), Gaps = 31/144 (21%)

Query: 45  GSIGRARARGQARAGGRDGSWATAPPWRGIRAE----------SAWVARVSAPRGASSFL 94
           G+ G    RG A AGG  GS    PPWR +R E          +  V R S P GA    
Sbjct: 70  GTAGGGGERG-APAGGARGSGGGPPPWR-LRNEVSPKASPPRPTCSVCRKS-PSGAEMDR 126

Query: 95  SPR------------FRPGWGEALLHHSGFPERGWPAGETEARDPDRRLHCATRVEI--G 140
           +PR            F  G  E     S  P RG    +    D  R      R EI   
Sbjct: 127 APRSGRFLGCAGPSCFSTGICEGHGRVSAAPARGSQPRDCSKDDGGRFPPGPARTEITTH 186

Query: 141 ARGAPSATREPGPARGSCGELASG 164
           +R  P+ ++     RG+CG   SG
Sbjct: 187 SRSGPTGSQ----TRGNCGAAGSG 206


>gi|239749560 PREDICTED: hypothetical protein XP_002347086 [Homo
           sapiens]
          Length = 443

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 19/110 (17%)

Query: 5   PRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGS 64
           P +++     GS R  P  L + G      G  +  +   G  G     GQ   GGR G+
Sbjct: 56  PASQAALASAGSRRCAPAALCSSG------GCALTRRAACGGRGGGTRAGQ---GGR-GA 105

Query: 65  WATAPPWRGIRAESAWVARVSAPRGASSFLSPR---FRPGWGEALLHHSG 111
           W  AP        SA ++  +A  G S  +  +   FRPGW   L    G
Sbjct: 106 WGEAP------VGSAALSSPTASPGCSEEVHGQRSSFRPGWSRVLAKEVG 149


>gi|239743710 PREDICTED: hypothetical protein XP_002342931 [Homo
           sapiens]
          Length = 522

 Score = 31.6 bits (70), Expect = 0.35
 Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 19/110 (17%)

Query: 5   PRARSRSREGGSERRVPLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGS 64
           P +++     GS R  P  L + G      G  +  +   G  G     GQ   GGR G+
Sbjct: 56  PASQAALASAGSRRCAPAALCSSG------GCALTRRAACGGRGGGTRAGQ---GGR-GA 105

Query: 65  WATAPPWRGIRAESAWVARVSAPRGASSFLSPR---FRPGWGEALLHHSG 111
           W  AP        SA ++  +A  G S  +  +   FRPGW   L    G
Sbjct: 106 WGEAP------VGSAALSSPTASPGCSEEVHGQRSSFRPGWSRVLAKEVG 149


>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 48/166 (28%), Positives = 64/166 (38%), Gaps = 29/166 (17%)

Query: 6   RARSRSREGGSERRVPLGLSAPGEMDRP-VGVGVGWQTVVGS-----------IGRARAR 53
           RA +RS +G   R VP G   P  + RP        QT +               +  + 
Sbjct: 96  RASARSAQGS--RDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALPAPRLCPQRASP 153

Query: 54  GQARAGGRDGSWATAPPWRGIRAESAWVARVSA--PRGASSFLSPRFRPGWGEALLHHSG 111
           G +  G R      +P  RG  A +A  AR +A   R  S+F++ R      +A L  + 
Sbjct: 154 GCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGR------DAALACAQ 207

Query: 112 FPERGWPAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGS 157
            P R  P G    R   RRL    R     RG P A     PARG+
Sbjct: 208 LPRR--PRGAGARRGMRRRLGAGERPAPRPRGPPRA-----PARGA 246


>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
           sapiens]
          Length = 255

 Score = 31.2 bits (69), Expect = 0.46
 Identities = 48/166 (28%), Positives = 64/166 (38%), Gaps = 29/166 (17%)

Query: 6   RARSRSREGGSERRVPLGLSAPGEMDRP-VGVGVGWQTVVGS-----------IGRARAR 53
           RA +RS +G   R VP G   P  + RP        QT +               +  + 
Sbjct: 96  RASARSAQGS--RDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSASALPAPRLCPQRASP 153

Query: 54  GQARAGGRDGSWATAPPWRGIRAESAWVARVSA--PRGASSFLSPRFRPGWGEALLHHSG 111
           G +  G R      +P  RG  A +A  AR +A   R  S+F++ R      +A L  + 
Sbjct: 154 GCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAGR------DAALACAQ 207

Query: 112 FPERGWPAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGS 157
            P R  P G    R   RRL    R     RG P A     PARG+
Sbjct: 208 LPRR--PRGAGARRGMRRRLGAGERPAPRPRGPPRA-----PARGA 246


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 36/132 (27%), Positives = 43/132 (32%), Gaps = 37/132 (28%)

Query: 26  APGEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGSWATAPPWRGIRAESAWVARVS 85
           +PGE   P  +G   + + G  GR    G A A G DG                      
Sbjct: 313 SPGENGSPGPMGP--RGLPGERGRTGPAGAAGARGNDGQ--------------------P 350

Query: 86  APRGASSFLSPRFRPGWGEALLHHSGFPERGWPAGETEARDPDRRLHCATRVEIGARGAP 145
            P G    + P   PG+        G P     AG T AR P+           G RG P
Sbjct: 351 GPAGPPGPVGPAGGPGF-------PGAPGAKGEAGPTGARGPEGAQ--------GPRGEP 395

Query: 146 SATREPGPARGS 157
                PGPA  S
Sbjct: 396 GTPGSPGPAGAS 407



 Score = 28.9 bits (63), Expect = 2.3
 Identities = 40/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 27  PGEMDRPVGVGV-GWQTVVGSIGRARARGQARAGGRDGSWATAPPW-RGIRAE--SAWVA 82
           PGE   P   G+ G + + G+ G    +G +   G  G  A  PP  +G+  E  +A +A
Sbjct: 704 PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPG--AQGPPGLQGMPGERGAAGIA 761

Query: 83  RVSAPRGASSFLSPRFRPG--WGEALLHHSGFPERGWPAGETEARDPDRRLHCATRVEIG 140
                RG      P   PG   G  L    G P      GE     P      A     G
Sbjct: 762 GPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA-----G 816

Query: 141 ARGAPSATREPGP 153
           ARGAP    E GP
Sbjct: 817 ARGAPGERGETGP 829


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 36/132 (27%), Positives = 43/132 (32%), Gaps = 37/132 (28%)

Query: 26  APGEMDRPVGVGVGWQTVVGSIGRARARGQARAGGRDGSWATAPPWRGIRAESAWVARVS 85
           +PGE   P  +G   + + G  GR    G A A G DG                      
Sbjct: 244 SPGENGSPGPMGP--RGLPGERGRTGPAGAAGARGNDGQ--------------------P 281

Query: 86  APRGASSFLSPRFRPGWGEALLHHSGFPERGWPAGETEARDPDRRLHCATRVEIGARGAP 145
            P G    + P   PG+        G P     AG T AR P+           G RG P
Sbjct: 282 GPAGPPGPVGPAGGPGF-------PGAPGAKGEAGPTGARGPEGAQ--------GPRGEP 326

Query: 146 SATREPGPARGS 157
                PGPA  S
Sbjct: 327 GTPGSPGPAGAS 338



 Score = 28.9 bits (63), Expect = 2.3
 Identities = 40/133 (30%), Positives = 50/133 (37%), Gaps = 13/133 (9%)

Query: 27  PGEMDRPVGVGV-GWQTVVGSIGRARARGQARAGGRDGSWATAPPW-RGIRAE--SAWVA 82
           PGE   P   G+ G + + G+ G    +G +   G  G  A  PP  +G+  E  +A +A
Sbjct: 635 PGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPG--AQGPPGLQGMPGERGAAGIA 692

Query: 83  RVSAPRGASSFLSPRFRPG--WGEALLHHSGFPERGWPAGETEARDPDRRLHCATRVEIG 140
                RG      P   PG   G  L    G P      GE     P      A     G
Sbjct: 693 GPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSA-----G 747

Query: 141 ARGAPSATREPGP 153
           ARGAP    E GP
Sbjct: 748 ARGAPGERGETGP 760


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 41/139 (29%), Positives = 49/139 (35%), Gaps = 13/139 (9%)

Query: 21   PLGLSAPGEMDRPVGV--GVGWQTVVGSIGRARARGQARAGGRDGSWATAPPWRGIRAES 78
            P G S     D P G   G+G    VG  G     G+    G  G     P  +G R E 
Sbjct: 1256 PRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGP----PGPKGERGEK 1311

Query: 79   AWVARVSAPRGASSFLSPRFRPG--WGEALLHHSGFPERGWPAGETEARDPDRRL-HCAT 135
                  S P GA+    P+  PG    +      GFP    P GE      D        
Sbjct: 1312 G----ESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGD 1367

Query: 136  RVEIGARGAPSATREPGPA 154
              E G  G+P  T EPGP+
Sbjct: 1368 DGEPGQTGSPGPTGEPGPS 1386


>gi|239756356 PREDICTED: similar to hCG1731366 [Homo sapiens]
          Length = 344

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 89  GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
           G SS +SP     + RPG G  +       ++G     WP  G+   R   RR H A   
Sbjct: 63  GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122

Query: 138 EIGARGAPSATREPGPA 154
             G R AP  TR  GPA
Sbjct: 123 SSGLRSAPGLTR-AGPA 138


>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 709

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 1   MQTQPRARSRSREGGSERRV--PLGLSAPGEMDRPVGVGVGWQTVVGSIGRARARGQARA 58
           ++ Q  A  R   G   RR+   LG SA G+    +G  +GW  + GS G A  RG    
Sbjct: 67  LRQQRAALDRELAGDGPRRLLPALGRSALGDW-AGIGHPLGWGLLGGSPGAAGGRG---G 122

Query: 59  GGRDGSWATAPPWRGIRAESAWVARVSAP 87
            G +G+ A A P RG R+     A V  P
Sbjct: 123 HGLEGT-APALPLRGGRSRGWLFAPVRLP 150


>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 215

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 37/116 (31%), Positives = 41/116 (35%), Gaps = 22/116 (18%)

Query: 53  RGQARAGGRDGSWATAP---PWRGIRAESAWVARVSAPRGASSFLSPRFRPGWGEALLHH 109
           RG    GGR  +WAT P   P         W  R    RG       R+ PG G ALL  
Sbjct: 9   RGCGGLGGR--TWATRPLPGPHSPEFGLPGWRVR----RGRREAQGARW-PGGGAALLAG 61

Query: 110 SGFPERGWPAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGL 165
              P R W  G             A R    A G P+     G  RGSC  +A  L
Sbjct: 62  RLRPRRRWAPGAGPV--------AACRPRAAAAGGPT----DGKGRGSCQRVAGPL 105


>gi|169209261 PREDICTED: similar to hCG1731366 [Homo sapiens]
          Length = 456

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 89  GASSFLSP-----RFRPGWGEALLHHSGFPERG-----WPA-GETEARDPDRRLHCATRV 137
           G SS +SP     + RPG G  +       ++G     WP  G+   R   RR H A   
Sbjct: 63  GDSSLISPWAKYPKQRPGQGVFIRVPKKHMQKGSACPLWPVRGKDSGRRRRRRQHFAPGT 122

Query: 138 EIGARGAPSATREPGPA 154
             G R AP  TR  GPA
Sbjct: 123 SSGLRSAPGLTR-AGPA 138


>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
           sapiens]
          Length = 594

 Score = 30.8 bits (68), Expect = 0.59
 Identities = 43/175 (24%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 9   SRSREGGSERRVPLGLSAPGEMDRPV-----GVGVGWQTVVGSIGRARARGQARAGGRDG 63
           +R++ GG   R   G   PG  D P      G     +      GRARAR  ++ G R  
Sbjct: 403 ARAKLGG---RGVCGKCGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQVGSRGR 459

Query: 64  SW------ATAPPWRGIRAESAWVARVSAPRGASSFLS--PRFRPGWGEALLHHSGF--P 113
            W        +   RG+     W    +APR +   L   P   P         +     
Sbjct: 460 GWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAAQRT 519

Query: 114 ERGWPAGETEARDPDRRLHCATRVEIGARGAPSATREPGPARGSCGELASGLCRL 168
           E G   G+     P        R +  + G P     P PAR     +AS  C L
Sbjct: 520 ELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPPPARALPAAVASARCSL 574


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,049,547
Number of Sequences: 37866
Number of extensions: 430294
Number of successful extensions: 1828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 1738
Number of HSP's gapped (non-prelim): 214
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.