Guide to the Human Genome
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Search of human proteins with 113414915

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]           456   e-129
gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]           456   e-129
gi|169165345 PREDICTED: hypothetical protein [Homo sapiens]           397   e-111
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]            42   5e-04
gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo s...    41   0.001
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       40   0.002
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       40   0.002
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    39   0.003
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ...    39   0.003
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ...    39   0.003
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    39   0.003
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|157504499 ankyrin repeat domain 47 [Homo sapiens]                   39   0.003
gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo sap...    38   0.008
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]            38   0.008
gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo sap...    38   0.008
gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo sap...    38   0.008
gi|71274172 ankyrin repeat domain 56 [Homo sapiens]                    38   0.008
gi|33188461 GATA binding protein 4 [Homo sapiens]                      37   0.010
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    37   0.013
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    37   0.013
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    37   0.013
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    37   0.013
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    37   0.013
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]            37   0.017
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ...    37   0.017
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]            37   0.017
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ...    37   0.017
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    36   0.023
gi|40288197 GATA binding protein 6 [Homo sapiens]                      36   0.023

>gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 220

 Score =  456 bits (1174), Expect = e-129
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
           MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP
Sbjct: 1   MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60

Query: 61  VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
           VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 61  VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120

Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
           LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180

Query: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
           VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220


>gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 220

 Score =  456 bits (1174), Expect = e-129
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
           MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP
Sbjct: 1   MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60

Query: 61  VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
           VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 61  VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120

Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
           LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180

Query: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
           VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220


>gi|169165345 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score =  397 bits (1021), Expect = e-111
 Identities = 198/220 (90%), Positives = 198/220 (90%), Gaps = 15/220 (6%)

Query: 1   MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
           MGWRR E GGPTYRRPAGVSGTR IRAP               A    PAGSRDGGAQGP
Sbjct: 1   MGWRRPEVGGPTYRRPAGVSGTRSIRAP---------------AFSPEPAGSRDGGAQGP 45

Query: 61  VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
           VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 46  VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 105

Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
           LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 106 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 165

Query: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
           VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 166 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 205


>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 466

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 42/158 (26%), Positives = 54/158 (34%), Gaps = 18/158 (11%)

Query: 13  YRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQG------PVSSGRI 66
           + R  G +G R  +  G  +R  P    P S+   G  G+R  G  G         S   
Sbjct: 219 WNRHGGAAGARA-QVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHS 277

Query: 67  QGGSRRPLPAGPHPGLSAEVPPVPSRRW-----------LSGRGKAGAVLAGTGVYALLP 115
            G    P P+   PG  A     P  R            L G G+   V    G +AL  
Sbjct: 278 TGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALAT 337

Query: 116 EAGSRLCSLPGFCAATPHPRRLSSLPLHAPAGQGELQA 153
             GSR     G     PH R LSS    +P     ++A
Sbjct: 338 RRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRA 375


>gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo
           sapiens]
          Length = 3014

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 41/117 (35%), Positives = 48/117 (41%), Gaps = 15/117 (12%)

Query: 26  RAPGVLRR--LTPSCPNP--ASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPG 81
           R PG  R   L P C     A+ T   P    D G  G ++  R   G+ RPLP      
Sbjct: 34  RVPGGTRAFALRPGCTYAVGAACTPRAPRELLDVGRDGRLAGRRRVSGAGRPLPLQVR-- 91

Query: 82  LSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCS-----LPGFCAATPH 133
           L A   P      LS R +A   L G G  A L   G+RLC      +PG CAA  H
Sbjct: 92  LVARSAPTA----LSRRLRARTHLPGCGARARLCGTGARLCGALCFPVPGGCAAAQH 144


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 8   AGGP----TYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG-SRDGGAQGPVS 62
           AGGP      R PA  S  R+   P   R+ + S P P  A+G  P G  R G  Q P  
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596

Query: 63  SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
                G +R+   AGP P      PP   +   SG G AG
Sbjct: 597 PA---GPTRQASQAGPVPRTG---PPTTQQPRPSGPGPAG 630



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)

Query: 9   GGPTYR--RPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRI 66
           G PT +  RP+G     R + P + ++ +   P PA+A  GGP   +   +Q   ++  +
Sbjct: 614 GPPTTQQPRPSGPGPAGRPK-PQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNL 672

Query: 67  QGGSRRPLPAGPHPGLSAE 85
                 P PA P P LS +
Sbjct: 673 ------PEPAPPRPSLSQD 685


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 8   AGGP----TYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG-SRDGGAQGPVS 62
           AGGP      R PA  S  R+   P   R+ + S P P  A+G  P G  R G  Q P  
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596

Query: 63  SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
                G +R+   AGP P      PP   +   SG G AG
Sbjct: 597 PA---GPTRQASQAGPVPRTG---PPTTQQPRPSGPGPAG 630


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
           RLE G  T+  P   +GT    AP    R  P+   P+P + +  G +GS    +  P  
Sbjct: 53  RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109

Query: 63  SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
             + Q GSR RP   GP PG  SA   P P+    + R   G   +G        +   +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169

Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
           + + P      P P   RR  + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 22/117 (18%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
           R  A GP   RP G S  R   AP   +    + P  A++ G GP              S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175

Query: 53  RDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
           R GG   P++  R +   RR       PGL     P+ SR   SG G       G+G
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL-----PLKSRPG-SGTGARSCGTWGSG 226


>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
           sapiens]
          Length = 209

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
           RLE G  T+  P   +GT    AP    R  P+   P+P + +  G +GS    +  P  
Sbjct: 53  RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109

Query: 63  SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
             + Q GSR RP   GP PG  SA   P P+    + R   G   +G        +   +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169

Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
           + + P      P P   RR  + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193



 Score = 29.3 bits (64), Expect = 2.8
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 16/90 (17%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
           R  A GP   RP G S  R   AP   +    + P  A++ G GP              S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175

Query: 53  RDGGAQGPVSSGRIQGGSRRPLPAGPHPGL 82
           R GG   P++  R +   RR       PGL
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL 205


>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
           sapiens]
          Length = 909

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 34  LTPSCPNPASAT--GGGPAGSRDGGAQGPVSS--GRIQGGSRRPLPAGPHPGLSAEVPPV 89
           L P  P    A   GGG  G ++GG +GP +S   R QG    PLPA   P  + E    
Sbjct: 694 LGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKAS 753

Query: 90  PSRRWLSGR------GKAGAVLAG 107
           P  +   G       G AG   AG
Sbjct: 754 PREQGEEGAPTQPCCGLAGGPQAG 777


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
           RLE G  T+  P   +GT    AP    R  P+   P+P + +  G +GS    +  P  
Sbjct: 53  RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109

Query: 63  SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
             + Q GSR RP   GP PG  SA   P P+    + R   G   +G        +   +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169

Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
           + + P      P P   RR  + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 22/117 (18%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
           R  A GP   RP G S  R   AP   +    + P  A++ G GP              S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175

Query: 53  RDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
           R GG   P++  R +   RR       PGL     P+ SR   SG G       G+G
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL-----PLKSRPG-SGTGARSCGTWGSG 226


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
           RLE G  T+  P   +GT    AP    R  P+   P+P + +  G +GS    +  P  
Sbjct: 53  RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109

Query: 63  SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
             + Q GSR RP   GP PG  SA   P P+    + R   G   +G        +   +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169

Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
           + + P      P P   RR  + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193



 Score = 30.4 bits (67), Expect = 1.2
 Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 22/117 (18%)

Query: 5   RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
           R  A GP   RP G S  R   AP   +    + P  A++ G GP              S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175

Query: 53  RDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
           R GG   P++  R +   RR       PGL     P+ SR   SG G       G+G
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL-----PLKSRPG-SGTGARSCGTWGSG 226


>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
          Length = 821

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 52/181 (28%), Positives = 70/181 (38%), Gaps = 18/181 (9%)

Query: 10  GPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGG 69
           GP  RR  G   +RR RAP   R       +P + T      S DGGA G +S G   G 
Sbjct: 58  GPAARRAPGPPTSRRPRAP---RPGLAGARSPGAWTSSESLASDDGGAPGILSQGAPSGL 114

Query: 70  SRRPL-PAGP--HPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPG 126
             +PL P  P  +P +   +    SRR    +    A   G GV    P    R    P 
Sbjct: 115 LMQPLSPRAPVRNPRVEHTLRET-SRRLELAQTHERAPSPGRGV-PRSPRGSGRSSPAPN 172

Query: 127 FCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRS--KEVANL 184
              A+P P +L  +         E  A+    L +  DQA+      + +R+   E A L
Sbjct: 173 LAPASPGPAQLQLV--------REQMAAALRRLRELEDQARTLPELQEQVRALRAEKARL 224

Query: 185 L 185
           L
Sbjct: 225 L 225


>gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)

Query: 27  APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
           AP   R +  S P  A A+   PAGS       P+ S R  GGS             RR 
Sbjct: 21  APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80

Query: 74  LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
           +P  P    S  +PP P  R   W +  G   A   G  V   L            +L +
Sbjct: 81  VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138

Query: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
            P     A TP  R + SLP HAP      Q
Sbjct: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168


>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 48/152 (31%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 4   RRLEAGGPTYRRPAG--VSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQ--G 59
           RR    GP  R P     + TRR  APG  R           AT    AG+R   A+   
Sbjct: 96  RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155

Query: 60  PVSSGRIQGGSRRPLPAGPHPGLSAEVP--PVPSRRWLSGRGKAGAVLAGTGVYALLPEA 117
           P   G   G   R L     PG SA +P  P  SRRW        A + G G     P  
Sbjct: 156 PPCGGTSLGAGSRAL---RRPG-SAALPRSPSSSRRW--------AAMPGPGA----PRP 199

Query: 118 GSRLCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
           G+      GF  A P P   +S+    PA  G
Sbjct: 200 GAPGTWPVGFAVAAP-PAAAASVAPPPPAVAG 230


>gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)

Query: 27  APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
           AP   R +  S P  A A+   PAGS       P+ S R  GGS             RR 
Sbjct: 21  APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80

Query: 74  LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
           +P  P    S  +PP P  R   W +  G   A   G  V   L            +L +
Sbjct: 81  VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138

Query: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
            P     A TP  R + SLP HAP      Q
Sbjct: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168


>gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo
           sapiens]
          Length = 338

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)

Query: 27  APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
           AP   R +  S P  A A+   PAGS       P+ S R  GGS             RR 
Sbjct: 21  APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80

Query: 74  LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
           +P  P    S  +PP P  R   W +  G   A   G  V   L            +L +
Sbjct: 81  VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138

Query: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
            P     A TP  R + SLP HAP      Q
Sbjct: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168


>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
          Length = 793

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 40/148 (27%), Positives = 47/148 (31%), Gaps = 9/148 (6%)

Query: 8   AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQG-PVSSGRI 66
           AGG     P    G RR   P    R       P     G  A + D    G P S  R 
Sbjct: 99  AGGAA---PCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAACNGLPGSDSR- 154

Query: 67  QGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPG 126
               R P   G   G   + PPVP+      + +A    A T          + L  LPG
Sbjct: 155 ----RAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCWECLQNNLAVLPG 210

Query: 127 FCAATPHPRRLSSLPLHAPAGQGELQAS 154
              A PH       P  A   Q +  AS
Sbjct: 211 ELGALPHSATAEEKPARALPAQDDRGAS 238


>gi|33188461 GATA binding protein 4 [Homo sapiens]
          Length = 442

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 45/155 (29%), Positives = 55/155 (35%), Gaps = 38/155 (24%)

Query: 7   EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPA---SATGGGPAGSRDGGAQGPVSS 63
           EAGGP        + +  +  P      TP  P+     S   GG AGS  GGA G  S 
Sbjct: 19  EAGGPGAFMHGAGAASSPVYVP------TPRVPSSVLGLSYLQGGGAGSASGGASGGSSG 72

Query: 64  GRIQG---GSRRPLPAGPHPGL--SAEVPPVPSRR------------------------W 94
           G   G   G+++  P     G   +A  PP  S R                        +
Sbjct: 73  GAASGAGPGTQQGSPGWSQAGADGAAYTPPPVSPRFSFPGTTGSLAAAAAAAAAREAAAY 132

Query: 95  LSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCA 129
            SG G AGA LAG   Y     AGS     P + A
Sbjct: 133 SSGGGAAGAGLAGREQYGRAGFAGSYSSPYPAYMA 167


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 7   EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRI 66
           EAG    R P G  G R    PG     TP  P PA A+G  P      GA+G   +  I
Sbjct: 376 EAGPTGARGPEGAQGPRG--EPG-----TPGSPGPAGASGN-PGTDGIPGAKGSAGAPGI 427

Query: 67  QGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
            G    P P GP PG      P+  +      G AG
Sbjct: 428 AGAPGFPGPRGP-PGPQGATGPLGPKGQTGEPGIAG 462



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 16   PAGVSGTRRIRA-PGVL-RRLTPSCPNPASATG--GGPAGSRDGGAQGPVSSGRIQGGSR 71
            P G++G R I   PG    R  P  P P+   G  G P  S D G  GPV    + G + 
Sbjct: 973  PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG 1032

Query: 72   RPLPAGPHPGLSAEVPPVPSRRWLSG----RGKAGAV 104
             P   G  PG  A+ P  P R   +G    RG+ GAV
Sbjct: 1033 EPGREG-SPG--ADGP--PGRDGAAGVKGDRGETGAV 1064



 Score = 32.0 bits (71), Expect = 0.43
 Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 30/119 (25%)

Query: 9   GGPTYRRPAGVSGTRRIRA-PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
           G P  R P+G++G +     PG  R   P  P     TG       D G QG V      
Sbjct: 528 GAPGERGPSGLAGPKGANGDPG--RPGEPGLPGARGLTGR----PGDAGPQGKVGPSGAP 581

Query: 68  GGSRRPLPAGP--------------------HPGLSAE--VPPVPSRRWLSGR-GKAGA 103
           G   RP P GP                     PG + E  +P  P  R L G+ G+ GA
Sbjct: 582 GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 640



 Score = 31.6 bits (70), Expect = 0.56
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 39  PNPASATG-GGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPS 91
           P P   TG  GP G+R  GAQGP  +    G + R  P G +       PP PS
Sbjct: 872 PGPQGPTGVTGPKGAR--GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 923



 Score = 28.5 bits (62), Expect = 4.7
 Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 7    EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGG-GPAG-SRDGGAQGPVSSG 64
            EAG P  R   G  G   ++         P  P P+   G  GPAG S   G  GPV   
Sbjct: 1120 EAGEPGERGLKGHRGFTGLQG-------LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS 1172

Query: 65   RIQGGSRRPLPAGPHPG 81
               G +  P P GP PG
Sbjct: 1173 GKDGANGIPGPIGP-PG 1188



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 16  PAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLP 75
           PAG +G R   APG      P  P PA   G  P      GA+G       +G +  P P
Sbjct: 811 PAGSAGARG--APGERGETGP--PGPAGFAGP-PGADGQPGAKGEQGEAGQKGDAGAPGP 865

Query: 76  AGP 78
            GP
Sbjct: 866 QGP 868


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 7   EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRI 66
           EAG    R P G  G R    PG     TP  P PA A+G  P      GA+G   +  I
Sbjct: 307 EAGPTGARGPEGAQGPRG--EPG-----TPGSPGPAGASGN-PGTDGIPGAKGSAGAPGI 358

Query: 67  QGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
            G    P P GP PG      P+  +      G AG
Sbjct: 359 AGAPGFPGPRGP-PGPQGATGPLGPKGQTGEPGIAG 393



 Score = 32.7 bits (73), Expect = 0.25
 Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 16  PAGVSGTRRIRA-PGVL-RRLTPSCPNPASATG--GGPAGSRDGGAQGPVSSGRIQGGSR 71
           P G++G R I   PG    R  P  P P+   G  G P  S D G  GPV    + G + 
Sbjct: 904 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG 963

Query: 72  RPLPAGPHPGLSAEVPPVPSRRWLSG----RGKAGAV 104
            P   G  PG  A+ P  P R   +G    RG+ GAV
Sbjct: 964 EPGREG-SPG--ADGP--PGRDGAAGVKGDRGETGAV 995



 Score = 32.0 bits (71), Expect = 0.43
 Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 30/119 (25%)

Query: 9   GGPTYRRPAGVSGTRRIRA-PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
           G P  R P+G++G +     PG  R   P  P     TG       D G QG V      
Sbjct: 459 GAPGERGPSGLAGPKGANGDPG--RPGEPGLPGARGLTGR----PGDAGPQGKVGPSGAP 512

Query: 68  GGSRRPLPAGP--------------------HPGLSAE--VPPVPSRRWLSGR-GKAGA 103
           G   RP P GP                     PG + E  +P  P  R L G+ G+ GA
Sbjct: 513 GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 571



 Score = 31.6 bits (70), Expect = 0.56
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 39  PNPASATG-GGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPS 91
           P P   TG  GP G+R  GAQGP  +    G + R  P G +       PP PS
Sbjct: 803 PGPQGPTGVTGPKGAR--GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 854



 Score = 28.5 bits (62), Expect = 4.7
 Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 7    EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGG-GPAG-SRDGGAQGPVSSG 64
            EAG P  R   G  G   ++         P  P P+   G  GPAG S   G  GPV   
Sbjct: 1051 EAGEPGERGLKGHRGFTGLQG-------LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS 1103

Query: 65   RIQGGSRRPLPAGPHPG 81
               G +  P P GP PG
Sbjct: 1104 GKDGANGIPGPIGP-PG 1119



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 16  PAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLP 75
           PAG +G R   APG      P  P PA   G  P      GA+G       +G +  P P
Sbjct: 742 PAGSAGARG--APGERGETGP--PGPAGFAGP-PGADGQPGAKGEQGEAGQKGDAGAPGP 796

Query: 76  AGP 78
            GP
Sbjct: 797 QGP 799


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 45/149 (30%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-----GGPAGSRDGGAQGPVS 62
           A GP  R   G  G   +  PG+L    P    PA   G     G P    D G +GP  
Sbjct: 289 AHGP--RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 346

Query: 63  SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSR 120
              + G    P P    PG S  +P     R+ SG G  G V+A       A+L +A   
Sbjct: 347 RAGLPGSDGAPGP----PGTSLMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLA 398

Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
           L   PG    T  P      PL  P   G
Sbjct: 399 LRGPPGPMGYTGRPG-----PLGQPGSPG 422



 Score = 32.3 bits (72), Expect = 0.33
 Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 8   AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
           AG P  R  AG  G   I  PG   R  P  P  A+   G P    + G  GP     +Q
Sbjct: 928 AGSPGERGAAGSGGP--IGPPG---RPGPQGPPGAAGEKGVPG---EKGPIGPTGRDGVQ 979

Query: 68  GGSRRPLPAGPHPGLSAE 85
           G    P PAGP PG++ E
Sbjct: 980 GPVGLPGPAGP-PGVAGE 996



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 17/84 (20%)

Query: 9   GGPTYRRPAGVSGTRRIRA-------PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPV 61
           G P    PAG+ G    R        PG+     PS P        GPAGS   G +G  
Sbjct: 887 GAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP-------GPAGSP--GERGAA 937

Query: 62  SSGRIQGGSRRPLPAGPHPGLSAE 85
            SG   G   RP P GP PG + E
Sbjct: 938 GSGGPIGPPGRPGPQGP-PGAAGE 960



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 9    GGPTYRRPAGVSGTRRIRAP-GVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
            G P  R PAG +G    + P G +  L P          G P    + G +GP      +
Sbjct: 1094 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1153

Query: 68   GGSRRPLPAGPHPG 81
            G S +P   GP PG
Sbjct: 1154 GESGQPGEPGP-PG 1166



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 9    GGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-------GGPAGSRDGGAQGPV 61
            G P  +   G+ G      PG      P  P PA   G       GGP G +  G QGP 
Sbjct: 1352 GSPGQKGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGPKGEK--GVQGPP 1405

Query: 62   SSGRIQGGSRRPLP 75
                  G   +PLP
Sbjct: 1406 GHPGPPGEVIQPLP 1419


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 45/149 (30%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-----GGPAGSRDGGAQGPVS 62
           A GP  R   G  G   +  PG+L    P    PA   G     G P    D G +GP  
Sbjct: 268 AHGP--RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 325

Query: 63  SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSR 120
              + G    P P    PG S  +P     R+ SG G  G V+A       A+L +A   
Sbjct: 326 RAGLPGSDGAPGP----PGTSLMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLA 377

Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
           L   PG    T  P      PL  P   G
Sbjct: 378 LRGPPGPMGYTGRPG-----PLGQPGSPG 401



 Score = 32.3 bits (72), Expect = 0.33
 Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 8   AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
           AG P  R  AG  G   I  PG   R  P  P  A+   G P    + G  GP     +Q
Sbjct: 907 AGSPGERGAAGSGGP--IGPPG---RPGPQGPPGAAGEKGVPG---EKGPIGPTGRDGVQ 958

Query: 68  GGSRRPLPAGPHPGLSAE 85
           G    P PAGP PG++ E
Sbjct: 959 GPVGLPGPAGP-PGVAGE 975



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 17/84 (20%)

Query: 9   GGPTYRRPAGVSGTRRIRA-------PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPV 61
           G P    PAG+ G    R        PG+     PS P        GPAGS   G +G  
Sbjct: 866 GAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP-------GPAGSP--GERGAA 916

Query: 62  SSGRIQGGSRRPLPAGPHPGLSAE 85
            SG   G   RP P GP PG + E
Sbjct: 917 GSGGPIGPPGRPGPQGP-PGAAGE 939



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 9    GGPTYRRPAGVSGTRRIRAP-GVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
            G P  R PAG +G    + P G +  L P          G P    + G +GP      +
Sbjct: 1073 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1132

Query: 68   GGSRRPLPAGPHPG 81
            G S +P   GP PG
Sbjct: 1133 GESGQPGEPGP-PG 1145



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 9    GGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-------GGPAGSRDGGAQGPV 61
            G P  +   G+ G      PG      P  P PA   G       GGP G +  G QGP 
Sbjct: 1331 GSPGQKGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGPKGEK--GVQGPP 1384

Query: 62   SSGRIQGGSRRPLP 75
                  G   +PLP
Sbjct: 1385 GHPGPPGEVIQPLP 1398


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 37.0 bits (84), Expect = 0.013
 Identities = 45/149 (30%), Positives = 54/149 (36%), Gaps = 22/149 (14%)

Query: 8   AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-----GGPAGSRDGGAQGPVS 62
           A GP  R   G  G   +  PG+L    P    PA   G     G P    D G +GP  
Sbjct: 375 AHGP--RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 432

Query: 63  SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSR 120
              + G    P P    PG S  +P     R+ SG G  G V+A       A+L +A   
Sbjct: 433 RAGLPGSDGAPGP----PGTSLMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLA 484

Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
           L   PG    T  P      PL  P   G
Sbjct: 485 LRGPPGPMGYTGRPG-----PLGQPGSPG 508



 Score = 32.3 bits (72), Expect = 0.33
 Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 9/78 (11%)

Query: 8    AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
            AG P  R  AG  G   I  PG   R  P  P  A+   G P    + G  GP     +Q
Sbjct: 1014 AGSPGERGAAGSGGP--IGPPG---RPGPQGPPGAAGEKGVPG---EKGPIGPTGRDGVQ 1065

Query: 68   GGSRRPLPAGPHPGLSAE 85
            G    P PAGP PG++ E
Sbjct: 1066 GPVGLPGPAGP-PGVAGE 1082



 Score = 29.6 bits (65), Expect = 2.1
 Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 17/84 (20%)

Query: 9    GGPTYRRPAGVSGTRRIRA-------PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPV 61
            G P    PAG+ G    R        PG+     PS P        GPAGS   G +G  
Sbjct: 973  GAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP-------GPAGSP--GERGAA 1023

Query: 62   SSGRIQGGSRRPLPAGPHPGLSAE 85
             SG   G   RP P GP PG + E
Sbjct: 1024 GSGGPIGPPGRPGPQGP-PGAAGE 1046



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 9    GGPTYRRPAGVSGTRRIRAP-GVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
            G P  R PAG +G    + P G +  L P          G P    + G +GP      +
Sbjct: 1180 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1239

Query: 68   GGSRRPLPAGPHPG 81
            G S +P   GP PG
Sbjct: 1240 GESGQPGEPGP-PG 1252



 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 13/74 (17%)

Query: 9    GGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-------GGPAGSRDGGAQGPV 61
            G P  +   G+ G      PG      P  P PA   G       GGP G +  G QGP 
Sbjct: 1438 GSPGQKGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGPKGEK--GVQGPP 1491

Query: 62   SSGRIQGGSRRPLP 75
                  G   +PLP
Sbjct: 1492 GHPGPPGEVIQPLP 1505


>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 36/111 (32%), Positives = 43/111 (38%), Gaps = 16/111 (14%)

Query: 2   GWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPA--GSRDGGAQG 59
           G R  +  G T   P     T+  R PG+ R  +P  P  A  TG GPA  G RD G  G
Sbjct: 176 GARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWG 235

Query: 60  PVSSGRIQGGSRRPLPA-GPHPGLSAEV-------PPVPSR--RWLSGRGK 100
                R+      PLP   PH    A +        P PS    WL  + K
Sbjct: 236 RWVRRRVP----CPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNK 282


>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
           sapiens]
          Length = 536

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 36/140 (25%)

Query: 4   RRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTP------------SCPNPASATGG---- 47
           RR     P +R  A   G R +R   +LR+L P             CP P+   G     
Sbjct: 122 RRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPR 181

Query: 48  -------GPAGSRDGGAQGPVSSGRIQGGSRRPLPAG-PHPGLS---------AEVPPVP 90
                   P G+R  G Q P   G     S  PLPA  PH G+          A+    P
Sbjct: 182 RWRGHGLQPGGARAPGLQVPAPPGP---ASPAPLPARQPHKGVRPLGCCRGGRAQAAGQP 238

Query: 91  SRRWLSGRGKAGAVLAGTGV 110
               L GRG+  AV AG  V
Sbjct: 239 RGLCLPGRGRDRAVEAGDAV 258


>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 36/111 (32%), Positives = 43/111 (38%), Gaps = 16/111 (14%)

Query: 2   GWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPA--GSRDGGAQG 59
           G R  +  G T   P     T+  R PG+ R  +P  P  A  TG GPA  G RD G  G
Sbjct: 176 GARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWG 235

Query: 60  PVSSGRIQGGSRRPLPA-GPHPGLSAEV-------PPVPSR--RWLSGRGK 100
                R+      PLP   PH    A +        P PS    WL  + K
Sbjct: 236 RWVRRRVP----CPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNK 282


>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
           sapiens]
          Length = 439

 Score = 36.6 bits (83), Expect = 0.017
 Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 27/154 (17%)

Query: 4   RRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSS 63
           ++ E G   +R P         R PG   RL+   P+P +     P      G+  P   
Sbjct: 166 KQREGGNGPWRAPV-------FRLPGARLRLSSQLPSPTTLPRAAPLTPYRPGSPSPRGH 218

Query: 64  GRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGS-RLC 122
            R++  SR P  A    G +  + PVP+R                G +++ PE G  R C
Sbjct: 219 SRLR--SRPPTRAQLRVGAN-PLSPVPARL--------------RGCHSVRPEGGGVRSC 261

Query: 123 SLPGFCAAT-PH-PRRLSSLPLHAPAGQGELQAS 154
              G C  T PH P RL   P+        LQ++
Sbjct: 262 RTLGCCPPTSPHQPPRLPVTPVPQSVALPSLQSA 295


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 33/109 (30%), Positives = 37/109 (33%), Gaps = 15/109 (13%)

Query: 9   GGPT---YRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGR 65
           GGP    +  P G  G R +  P   R   P    P     GGP     G   GP   GR
Sbjct: 648 GGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGR 707

Query: 66  IQGGSRRPLP-----AGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
              G   P P      G   G S   PP       +GRG  G  + G G
Sbjct: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPP-------NGRGGPGGGMVGGG 749


>gi|40288197 GATA binding protein 6 [Homo sapiens]
          Length = 595

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 37  SCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLS 96
           S  +P   +GGG AG   GGA GP  +G          P  P P ++      P     +
Sbjct: 229 SADSPPYGSGGGAAG---GGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAA 285

Query: 97  GRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATP 132
           G G AG V  G    A +   G R        AA P
Sbjct: 286 GSGGAGGVSGGGSSLAAM---GGREPQYSSLSAARP 318


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.138    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,543,195
Number of Sequences: 37866
Number of extensions: 743483
Number of successful extensions: 5189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 4477
Number of HSP's gapped (non-prelim): 1102
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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