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Search of human proteins with 113414749
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113414749 PREDICTED: similar to hCG1811563 [Homo sapiens]
(322 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113414749 PREDICTED: similar to hCG1811563 [Homo sapiens] 678 0.0
gi|169165721 PREDICTED: similar to hCG1811563 [Homo sapiens] 672 0.0
gi|113415341 PREDICTED: similar to hCG1811563 [Homo sapiens] 672 0.0
gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform... 33 0.26
gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 33 0.26
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 33 0.26
gi|237820624 pleckstrin homology domain containing, family N mem... 31 1.3
gi|237820622 pleckstrin homology domain containing, family N mem... 31 1.3
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 31 1.3
gi|4507447 transcription factor AP-4 (activating enhancer bindin... 30 2.2
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|169204928 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|113423861 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|113423437 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 30 2.2
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 30 2.2
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 30 2.2
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 30 2.2
gi|4504975 low density lipoprotein receptor precursor [Homo sapi... 30 2.9
gi|91208420 bassoon protein [Homo sapiens] 30 2.9
gi|115511036 alpha-kinase 3 [Homo sapiens] 30 2.9
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 30 3.8
gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens] 30 3.8
gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens] 30 3.8
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 30 3.8
gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo ... 30 3.8
gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo ... 30 3.8
gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo ... 30 3.8
>gi|113414749 PREDICTED: similar to hCG1811563 [Homo sapiens]
Length = 322
Score = 678 bits (1749), Expect = 0.0
Identities = 322/322 (100%), Positives = 322/322 (100%)
Query: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL
Sbjct: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
Query: 61 RRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
RRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL
Sbjct: 61 RRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
Query: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG
Sbjct: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
Query: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR
Sbjct: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
Query: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR
Sbjct: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
Query: 301 LGCFLALCLGGTCLVTTGLELL 322
LGCFLALCLGGTCLVTTGLELL
Sbjct: 301 LGCFLALCLGGTCLVTTGLELL 322
>gi|169165721 PREDICTED: similar to hCG1811563 [Homo sapiens]
Length = 322
Score = 672 bits (1735), Expect = 0.0
Identities = 320/322 (99%), Positives = 320/322 (99%)
Query: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL
Sbjct: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
Query: 61 RRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
RRPRASRHTRTG MGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL
Sbjct: 61 RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
Query: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG
Sbjct: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
Query: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR
Sbjct: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
Query: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR
Sbjct: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
Query: 301 LGCFLALCLGGTCLVTTGLELL 322
LGCFLALCLGGTCLVTTGLELL
Sbjct: 301 LGCFLALCLGGTCLVTTGLELL 322
>gi|113415341 PREDICTED: similar to hCG1811563 [Homo sapiens]
Length = 322
Score = 672 bits (1735), Expect = 0.0
Identities = 320/322 (99%), Positives = 320/322 (99%)
Query: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL
Sbjct: 1 MLILMVQCMTMLLNVPLHFSTLPSGREWATPGTLHILAFVSCLSPLECKLQRNCIRSTWL 60
Query: 61 RRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
RRPRASRHTRTG MGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL
Sbjct: 61 RRPRASRHTRTGICMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL 120
Query: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG
Sbjct: 121 QGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRG 180
Query: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR
Sbjct: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSRAQHCTAR 240
Query: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR
Sbjct: 241 RPTADMWGDWVDRKTRRAFVAAGRDSLGSLNQARVGGDPVPVHRPASAQPGESTCAPWDR 300
Query: 301 LGCFLALCLGGTCLVTTGLELL 322
LGCFLALCLGGTCLVTTGLELL
Sbjct: 301 LGCFLALCLGGTCLVTTGLELL 322
>gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform c
precursor [Homo sapiens]
Length = 899
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 49 KLQRNCIRSTWLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQER 108
K++R R W + + T + T ++ L LE+ RE+ A E +
Sbjct: 794 KMRRLITRGEWQSEAQDTMKTGSSTNNNEEEKSRL-LEKEN----RELEKIIAEKEERVS 848
Query: 109 RLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPP 144
L H + QL+ +R P L GPP+PP
Sbjct: 849 ELRHQLQSRQQLRSRRHPPTPPEPSGGLPRGPPEPP 884
>gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform b
precursor [Homo sapiens]
Length = 844
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 49 KLQRNCIRSTWLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQER 108
K++R R W + + T + T ++ L LE+ RE+ A E +
Sbjct: 739 KMRRLITRGEWQSEAQDTMKTGSSTNNNEEEKSRL-LEKEN----RELEKIIAEKEERVS 793
Query: 109 RLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPP 144
L H + QL+ +R P L GPP+PP
Sbjct: 794 ELRHQLQSRQQLRSRRHPPTPPEPSGGLPRGPPEPP 829
>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
precursor [Homo sapiens]
Length = 961
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 49 KLQRNCIRSTWLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQER 108
K++R R W + + T + T ++ L LE+ RE+ A E +
Sbjct: 856 KMRRLITRGEWQSEAQDTMKTGSSTNNNEEEKSRL-LEKEN----RELEKIIAEKEERVS 910
Query: 109 RLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPP 144
L H + QL+ +R P L GPP+PP
Sbjct: 911 ELRHQLQSRQQLRSRRHPPTPPEPSGGLPRGPPEPP 946
>gi|237820624 pleckstrin homology domain containing, family N member
1 isoform b [Homo sapiens]
Length = 576
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 63 PRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL-- 120
P A+ H R G ++F GP + P S + + R C + L
Sbjct: 427 PPATSHRRVTDVRGLEEFLSAMQSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLS 486
Query: 121 -QGQREPERLTSHGSSLVPGPPDPPWSPQV 149
+G + H S G P PP +PQ+
Sbjct: 487 KKGALQSRAAQRHRGSAKDGGPQPPDAPQL 516
>gi|237820622 pleckstrin homology domain containing, family N member
1 isoform a [Homo sapiens]
Length = 611
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 63 PRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQL-- 120
P A+ H R G ++F GP + P S + + R C + L
Sbjct: 462 PPATSHRRVTDVRGLEEFLSAMQSARGPTPSSPLPSVPVSVPASDPRSCSSGPAGPYLLS 521
Query: 121 -QGQREPERLTSHGSSLVPGPPDPPWSPQV 149
+G + H S G P PP +PQ+
Sbjct: 522 KKGALQSRAAQRHRGSAKDGGPQPPDAPQL 551
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 31.2 bits (69), Expect = 1.3
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 11/157 (7%)
Query: 85 LERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQ--REPERLTSHGSSLVPGPPD 142
L+RP P R S+ + L KPE + Q Q R P S G+ P PP+
Sbjct: 494 LKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPTTGGSEGAGAAPCPPN 553
Query: 143 P--PWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSPAR--RLR 198
P W P + P R+ E + S G T PP L G PA + +
Sbjct: 554 PANSWVPGLSPGGSRRPP----RSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKAQ 609
Query: 199 LPAPHDLCGLGAL-SSVAAGLQAGACAENDCGRGSRA 234
P P + L + +SV++ L + + +D R+
Sbjct: 610 PPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRS 646
>gi|4507447 transcription factor AP-4 (activating enhancer binding
protein 4) [Homo sapiens]
Length = 338
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 104 ESQERRLCHAQKPEMQLQGQRE----PERLTSHGSSLVPGPPDPP 144
+ ++ RL H +K E + Q R P T H + +VP PP PP
Sbjct: 200 QQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHPTVIVPAPPPPP 244
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 59 WLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEM 118
WL R R R GA TL P P G + A+A Q + H + +
Sbjct: 174 WLENRRQRRRKAGAERAGAGP----TLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQW 229
Query: 119 QLQGQREPERLTSHGSS 135
+L +R PER S
Sbjct: 230 RLLPRRRPERAAGSAGS 246
>gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 138 PGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSP---- 193
P PP PP P H N D+R G + WRGRG R LRG
Sbjct: 137 PPPPPPPLPPAPTRH---GNTDVRASQPIAGCGRREGAR-WRGRGQRQAKALRGRKKGRG 192
Query: 194 ARRLRLPAP 202
RR + P P
Sbjct: 193 VRRRKSPPP 201
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 59 WLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEM 118
WL R R R GA TL P P G + A+A Q + H + +
Sbjct: 174 WLENRRQRRRKAGAERAGAGP----TLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQW 229
Query: 119 QLQGQREPERLTSHGSS 135
+L +R PER S
Sbjct: 230 RLLPRRRPERAAGSAGS 246
>gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 138 PGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSP---- 193
P PP PP P H N D+R G + WRGRG R LRG
Sbjct: 137 PPPPPPPLPPAPTRH---GNTDVRASQPIAGCGRREGAR-WRGRGQRQAKALRGRKKGRG 192
Query: 194 ARRLRLPAP 202
RR + P P
Sbjct: 193 VRRRKSPPP 201
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 59 WLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEM 118
WL R R R GA TL P P G + A+A Q + H + +
Sbjct: 174 WLENRRQRRRKAGAERAGAGP----TLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQW 229
Query: 119 QLQGQREPERLTSHGSS 135
+L +R PER S
Sbjct: 230 RLLPRRRPERAAGSAGS 246
>gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 138 PGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSP---- 193
P PP PP P H N D+R G + WRGRG R LRG
Sbjct: 137 PPPPPPPLPPAPTRH---GNTDVRASQPIAGCGRREGAR-WRGRGQRQAKALRGRKKGRG 192
Query: 194 ARRLRLPAP 202
RR + P P
Sbjct: 193 VRRRKSPPP 201
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 85 LERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVP----GP 140
+E PGPG C A+AE+Q L A QL +P H + VP GP
Sbjct: 36 MEAPGPGPCGGGGSLAAAAEAQRENLSAAF--SRQLNVNAKPFVPNVHAAEFVPSFLRGP 93
Query: 141 PDPP 144
PP
Sbjct: 94 AAPP 97
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 85 LERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVP----GP 140
+E PGPG C A+AE+Q L A QL +P H + VP GP
Sbjct: 36 MEAPGPGPCGGGGSLAAAAEAQRENLSAAF--SRQLNVNAKPFVPNVHAAEFVPSFLRGP 93
Query: 141 PDPP 144
PP
Sbjct: 94 AAPP 97
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 30.4 bits (67), Expect = 2.2
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 56 RSTWLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQK 115
RS+ +R + + +T R+G+ T RP R + R A +
Sbjct: 387 RSSGPQRAGSLKREKTEERLGSPSPASRTPARPFGSVGRRSRLAQDFMAQCLRESSPAAR 446
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPDPPWSP 147
P + P LT HG+S V GPP PP +P
Sbjct: 447 PSPEKVPPVLPAPLTPHGTSPV-GPPTPPPAP 477
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 30.4 bits (67), Expect = 2.2
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 56 RSTWLRRPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQK 115
RS+ +R + + +T R+G+ T RP R + R A +
Sbjct: 457 RSSGPQRAGSLKREKTEERLGSPSPASRTPARPFGSVGRRSRLAQDFMAQCLRESSPAAR 516
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPDPPWSP 147
P + P LT HG+S V GPP PP +P
Sbjct: 517 PSPEKVPPVLPAPLTPHGTSPV-GPPTPPPAP 547
>gi|4504975 low density lipoprotein receptor precursor [Homo
sapiens]
Length = 860
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 227 DCGRGSRAQHCTARRPTADMWGDWVDRKTRRAFVA-AGRDSLGSLNQARVGGDPVPVHRP 285
DC GS Q C + + D + + R FV + RD L ++A PV P
Sbjct: 94 DCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASC---PVLTCGP 150
Query: 286 ASAQPGESTCAP 297
AS Q STC P
Sbjct: 151 ASFQCNSSTCIP 162
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 30.0 bits (66), Expect = 2.9
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 98 ITPASAESQERRLCHAQKPEMQLQGQREPERLTSHG---------SSLVPGPPDPPWSPQ 148
IT AS S + R+ HA L E + T+HG S L P PP PP P+
Sbjct: 1559 ITLASDASSQTRMVHASASTSPLCSPTETQP-TTHGYSQTTPPSVSQLPPEPPGPPGFPR 1617
Query: 149 V 149
V
Sbjct: 1618 V 1618
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 30.0 bits (66), Expect = 2.9
Identities = 44/173 (25%), Positives = 57/173 (32%), Gaps = 24/173 (13%)
Query: 62 RPRASRHTRTGTRMGAQKFQDLTLERPGPGGCREVSITPASAESQERRLCHAQKPEMQLQ 121
RPR TG ++ PGPG + + Q+ R +P LQ
Sbjct: 57 RPRGPLICHTGHEQAGRE--------PGPGSSTKGPVL----HDQDTRCAFLPRPPGPLQ 104
Query: 122 GQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPDIRNRARE-EGVLKGHSLSCWRG 180
+R GS L GP W+P P RAR EG + +
Sbjct: 105 TRRYCRHQGRQGSGLGAGPGAGTWAPAPP---GVSKPRCPGRARPGEGQQQVTT------ 155
Query: 181 RGTRPPFLLRGSPARRLRLPAPHDLCGLGALSSVAAGLQAGACAENDCGRGSR 233
RPP + RG+ R A G GA + A AG GSR
Sbjct: 156 --ARPPAINRGARQPRAGAAAAGRGPGAGAWRTGEAAASAGPAVGEGGAMGSR 206
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 29.6 bits (65), Expect = 3.8
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 100 PASAESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPDPPWSPQVDLHLICYNPD 159
P + ER + AQ+ + ++GQ P+ +PGPP+P P
Sbjct: 537 PLPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGP---------VGPT 587
Query: 160 IRNRAREEGVLKGHSLSCWRGRGTRPPFLLRGSPARRLRLPAPHDLCGL 208
A G+ G + G LLRG P P P L G+
Sbjct: 588 AGAEAEGSGLGWGSDVGSGSGDLVGSEQLLRGPPGP----PGPPGLPGI 632
>gi|187171277 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 88 PGPGGCREVSITPAS--AESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPD 142
P PG S+ PAS ++ Q RR Q+ + Q Q ++P+ L+S G L P D
Sbjct: 20 PAPGRWVSSSV-PASDPSDGQRRRQQQQQQQQQQQQQPQQPQVLSSEGGQLRHNPLD 75
>gi|4505937 DNA-directed DNA polymerase gamma [Homo sapiens]
Length = 1239
Score = 29.6 bits (65), Expect = 3.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 88 PGPGGCREVSITPAS--AESQERRLCHAQKPEMQLQGQREPERLTSHGSSLVPGPPD 142
P PG S+ PAS ++ Q RR Q+ + Q Q ++P+ L+S G L P D
Sbjct: 20 PAPGRWVSSSV-PASDPSDGQRRRQQQQQQQQQQQQQPQQPQVLSSEGGQLRHNPLD 75
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 29.6 bits (65), Expect = 3.8
Identities = 34/113 (30%), Positives = 40/113 (35%), Gaps = 32/113 (28%)
Query: 133 GSSLVPGPPDPPWSPQVDLHLICYNPDIRNRAREEGVLKGHSLSCWRGRGTRPPFLLRG- 191
G S P PP PP P+ +P R R GHS + GRGT+ P R
Sbjct: 183 GGSSPPAPPLPP-PPKPG------SPTQRAREASSWKPPGHSHTAPPGRGTQRPLTQRHS 235
Query: 192 ---------------------SPARRLRLPAPHDLCGLGALSSVAAGLQAGAC 223
SP +RL P P D AL+S Q GAC
Sbjct: 236 SESSSELSSSAWPGTIWTSTLSPGQRLPTPPPPD---PAALTSWGLPQQQGAC 285
>gi|239752992 PREDICTED: hypothetical protein XP_002345322 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 3.8
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPD---PPWSPQVDLHLICYNPDIRNRARE--EGVL 170
P Q +G R P R + HG + +PG P+ PP P D I Y R+ E EG
Sbjct: 138 PVCQTRG-RSPSRTSFHGETQIPGAPEGRKPPSCPGKDQRDINYKSSGTPRSLEPDEGAA 196
Query: 171 K-GHSLSCWRGRGTRP 185
S C +G RP
Sbjct: 197 SWASSPVCSPVQGKRP 212
>gi|239747550 PREDICTED: hypothetical protein XP_002347647 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 3.8
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPD---PPWSPQVDLHLICYNPDIRNRARE--EGVL 170
P Q +G R P R + HG + +PG P+ PP P D I Y R+ E EG
Sbjct: 138 PVCQTRG-RSPSRTSFHGETQIPGAPEGRKPPSCPGKDQRDINYKSSGTPRSLEPDEGAA 196
Query: 171 K-GHSLSCWRGRGTRP 185
S C +G RP
Sbjct: 197 SWASSPVCSPVQGKRP 212
>gi|239741424 PREDICTED: hypothetical protein XP_002342197 [Homo
sapiens]
Length = 277
Score = 29.6 bits (65), Expect = 3.8
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 116 PEMQLQGQREPERLTSHGSSLVPGPPD---PPWSPQVDLHLICYNPDIRNRARE--EGVL 170
P Q +G R P R + HG + +PG P+ PP P D I Y R+ E EG
Sbjct: 138 PVCQTRG-RSPSRTSFHGETQIPGAPEGRKPPSCPGKDQRDINYKSSGTPRSLEPDEGAA 196
Query: 171 K-GHSLSCWRGRGTRP 185
S C +G RP
Sbjct: 197 SWASSPVCSPVQGKRP 212
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,038,101
Number of Sequences: 37866
Number of extensions: 882791
Number of successful extensions: 3352
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3324
Number of HSP's gapped (non-prelim): 75
length of query: 322
length of database: 18,247,518
effective HSP length: 102
effective length of query: 220
effective length of database: 14,385,186
effective search space: 3164740920
effective search space used: 3164740920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.