Guide to the Human Genome
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Name: LOC728730 Sequence: fasta or formatted (119aa) NCBI GI: 113413673
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {119aa} PREDICTED: hypothetical protein
alt mRNA {119aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         12           2
 C cysteine            3.4          4           1
 D aspartate           5.9          7           1
 E glutamate           9.2         11           2
 F phenylalanine       0.0          0           0
 G glycine             8.4         10           1
 H histidine           0.8          1           1
 I isoleucine          3.4          4           1
 K lysine              3.4          4           1
 L leucine             8.4         10           1
 M methionine          1.7          2           1
 N asparagine          3.4          4           1
 P proline             5.0          6           1
 Q glutamine           8.4         10           1
 R arginine           10.1         12           2
 S serine              5.9          7           2
 T threonine           5.9          7           2
 V valine              5.0          6           2
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728730             1.000   PREDICTED: hypothetical protein 
LOC728730             1.000   PREDICTED: hypothetical protein 
ANKRD35               0.032   ankyrin repeat domain 35 
MAP7D1                0.032   MAP7 domain containing 1 
SLC26A6               0.023   solute carrier family 26, member 6 isoform 3 
ARHGEF2               0.018   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.018   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.018   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
DLGAP2                0.018   discs large-associated protein 2 
NPTX2                 0.018   neuronal pentraxin II 
DLGAP4                0.018   disks large-associated protein 4 isoform c 
DLGAP4                0.018   disks large-associated protein 4 isoform b 
DLGAP4                0.018   disks large-associated protein 4 isoform a 
ANKZF1                0.018   ankyrin repeat and zinc finger domain containing 1 ...
ANKZF1                0.018   ankyrin repeat and zinc finger domain containing 1 ...
SPOCD1                0.014   SPOC domain containing 1 
ASB16                 0.014   ankyrin repeat and SOCS box-containing protein 16 [H...
PRG2                  0.014   plasticity-related protein 2 
PHC2                  0.014   polyhomeotic-like 2 isoform b 
PHC2                  0.014   polyhomeotic-like 2 isoform a 
ZC3H13                0.014   zinc finger CCCH-type containing 13 
TTC6                  0.009   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.009   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.009   PREDICTED: chromosome 14 open reading frame 25 [Hom...
LOC100290359          0.009   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.009   PREDICTED: hypothetical protein XP_002342114 
MACF1                 0.009   microfilament and actin filament cross-linker protei...
LEPREL2               0.009   leprecan-like 2 
KIF16B                0.009   kinesin-like motor protein C20orf23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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