Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 19424136
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19424136 potassium channel, subfamily V, member 2 [Homo
sapiens]
(545 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19424136 potassium channel, subfamily V, member 2 [Homo sapiens] 1110 0.0
gi|27436974 potassium voltage-gated channel, Shab-related subfam... 334 1e-91
gi|4826784 potassium voltage-gated channel, Shab-related subfami... 332 5e-91
gi|25952108 potassium voltage-gated channel delayed-rectifier pr... 328 8e-90
gi|7657289 potassium channel, subfamily V, member 1 [Homo sapiens] 321 9e-88
gi|13492973 potassium voltage-gated channel delayed-rectifier pr... 295 7e-80
gi|45383011 potassium voltage-gated channel, delayed-rectifier, ... 290 3e-78
gi|20070166 potassium voltage-gated channel, subfamily F, member... 284 2e-76
gi|27436988 potassium voltage-gated channel, subfamily G, member... 269 4e-72
gi|27436996 potassium voltage-gated channel, subfamily G, member... 265 8e-71
gi|6912444 potassium voltage-gated channel, subfamily G, member ... 253 2e-67
gi|27436993 potassium voltage-gated channel, subfamily G, member... 239 5e-63
gi|19071574 potassium voltage-gated channel, subfamily G, member... 236 4e-62
gi|4826786 Shaw-related voltage-gated potassium channel protein ... 214 1e-55
gi|163792201 Shaw-related voltage-gated potassium channel protei... 214 1e-55
gi|27436981 potassium voltage-gated channel, Shal-related subfam... 211 1e-54
gi|88758576 Shaw-related voltage-gated potassium channel protein... 209 4e-54
gi|24497462 Shaw-related voltage-gated potassium channel protein... 209 4e-54
gi|24497464 Shaw-related voltage-gated potassium channel protein... 209 4e-54
gi|21217561 Shaw-related voltage-gated potassium channel protein... 208 9e-54
gi|21217563 Shaw-related voltage-gated potassium channel protein... 208 9e-54
gi|24497458 Shaw-related voltage-gated potassium channel protein... 208 9e-54
gi|9789987 potassium voltage-gated channel, Shal-related subfami... 205 1e-52
gi|27436984 potassium voltage-gated channel, Shal-related subfam... 205 1e-52
gi|27436986 potassium voltage-gated channel, Shal-related subfam... 205 1e-52
gi|4504817 potassium voltage-gated channel, shaker-related subfa... 196 5e-50
gi|25952087 potassium voltage-gated channel, shaker-related subf... 194 1e-49
gi|119395748 potassium voltage-gated channel subfamily A member ... 194 2e-49
gi|25952092 potassium voltage-gated channel, shaker-related subf... 193 4e-49
gi|88758565 potassium voltage-gated channel, shaker-related subf... 191 1e-48
>gi|19424136 potassium channel, subfamily V, member 2 [Homo sapiens]
Length = 545
Score = 1110 bits (2872), Expect = 0.0
Identities = 545/545 (100%), Positives = 545/545 (100%)
Query: 1 MLKQSERRRSWSYRPWNTTENEGSQHRRSICSLGARSGSQASIHGWTEGNYNYYIEEDED 60
MLKQSERRRSWSYRPWNTTENEGSQHRRSICSLGARSGSQASIHGWTEGNYNYYIEEDED
Sbjct: 1 MLKQSERRRSWSYRPWNTTENEGSQHRRSICSLGARSGSQASIHGWTEGNYNYYIEEDED 60
Query: 61 GEEEDQWKDDLAEEDQQAGEVTTAKPEGPSDPPALLSTLNVNVGGHSYQLDYCELAGFPK 120
GEEEDQWKDDLAEEDQQAGEVTTAKPEGPSDPPALLSTLNVNVGGHSYQLDYCELAGFPK
Sbjct: 61 GEEEDQWKDDLAEEDQQAGEVTTAKPEGPSDPPALLSTLNVNVGGHSYQLDYCELAGFPK 120
Query: 121 TRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRR 180
TRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRR
Sbjct: 121 TRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRR 180
Query: 181 FLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYG 240
FLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYG
Sbjct: 181 FLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYG 240
Query: 241 PQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGEGGPDLRP 300
PQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGEGGPDLRP
Sbjct: 241 PQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGEGGPDLRP 300
Query: 301 ILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGH 360
ILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGH
Sbjct: 301 ILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGH 360
Query: 361 QRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAM 420
QRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAM
Sbjct: 361 QRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAM 420
Query: 421 GIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAF 480
GIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAF
Sbjct: 421 GIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAF 480
Query: 481 GIILNGMPISILYNKFSDYYSKLKAYEYTTIRRERGEVNFMQRARKKIAECLLGSNPQLT 540
GIILNGMPISILYNKFSDYYSKLKAYEYTTIRRERGEVNFMQRARKKIAECLLGSNPQLT
Sbjct: 481 GIILNGMPISILYNKFSDYYSKLKAYEYTTIRRERGEVNFMQRARKKIAECLLGSNPQLT 540
Query: 541 PRQEN 545
PRQEN
Sbjct: 541 PRQEN 545
>gi|27436974 potassium voltage-gated channel, Shab-related
subfamily, member 2 [Homo sapiens]
Length = 911
Score = 334 bits (856), Expect = 1e-91
Identities = 167/416 (40%), Positives = 266/416 (63%), Gaps = 14/416 (3%)
Query: 99 LNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVF 158
+ +NVGG ++++ + L P+TRLG+L + L +CDDY +EYFFDR P F
Sbjct: 37 VKINVGGLNHEVLWRTLDRLPRTRLGKLRDCNTHESLLEVCDDYNLNENEYFFDRHPGAF 96
Query: 159 QLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQH 218
+ NFY +G L +++ +C F +EL YWG+ Y CC+ + +++++++E L+ +
Sbjct: 97 TSILNFYRTGKLHMMEEMCALSFGQELDYWGIDEIYLESCCQARYHQKKEQMNEELRREA 156
Query: 219 ELRAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALA 278
E + + EE D +R++LW+L+EKP SSVAAK + + S F+++S +AL+
Sbjct: 157 ETMREREGEEF-----DNTCCPDKRKKLWDLLEKPNSSVAAKILAIVSILFIVLSTIALS 211
Query: 279 LNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLV 338
LNT+ E+Q+ G+ + + L HVE +C+ +FT+EYLLR S+P+ +F + LN++
Sbjct: 212 LNTLPELQETDEFGQLNDNRQ--LAHVEAVCIAWFTMEYLLRFLSSPNKWKFFKGPLNVI 269
Query: 339 DLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLR 398
DL+AILP Y+ + L + ++V V +V+++ R+MRI RILKLARHSTGL+
Sbjct: 270 DLLAILPYYVTIFLT-------ESNKSVLQFQNVRRVVQIFRIMRILRILKLARHSTGLQ 322
Query: 399 AFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAVSISTV 458
+ GFTLR+ Y ++G L+LF+AMGI FS+ V+ E D +T FT+IP S+WWA ++++TV
Sbjct: 323 SLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDEDATKFTSIPASFWWATITMTTV 382
Query: 459 GYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRE 514
GYGD+YP+T LG+ LC G+++ +PI I+ N FS++Y + K E RRE
Sbjct: 383 GYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKAIKRRE 438
>gi|4826784 potassium voltage-gated channel, Shab-related subfamily,
member 1 [Homo sapiens]
Length = 858
Score = 332 bits (851), Expect = 5e-91
Identities = 168/416 (40%), Positives = 261/416 (62%), Gaps = 14/416 (3%)
Query: 99 LNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVF 158
+ +NVGG ++++ + L P+TRLG+L + L +CDDY +EYFFDR P F
Sbjct: 33 VRLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTHDSLLEVCDDYSLDDNEYFFDRHPGAF 92
Query: 159 QLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQH 218
+ NFY +G L +++ +C F +EL YWG+ Y CC+ + +++++++E LK +
Sbjct: 93 TSILNFYRTGRLHMMEEMCALSFSQELDYWGIDEIYLESCCQARYHQKKEQMNEELKREA 152
Query: 219 ELRAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALA 278
E + + EE D +R++LW+L+EKP SSVAAK + + S F+++S +AL+
Sbjct: 153 ETLREREGEEF-----DNTCCAEKRKKLWDLLEKPNSSVAAKILAIISIMFIVLSTIALS 207
Query: 279 LNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLV 338
LNT+ E+Q G+ + P L HVE +C+ +FT+EYLLR S+P +F + LN +
Sbjct: 208 LNTLPELQSLDEFGQSTDN--PQLAHVEAVCIAWFTMEYLLRFLSSPKKWKFFKGPLNAI 265
Query: 339 DLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLR 398
DL+AILP Y+ + L + ++V V +V+++ R+MRI RILKLARHSTGL+
Sbjct: 266 DLLAILPYYVTIFLT-------ESNKSVLQFQNVRRVVQIFRIMRILRILKLARHSTGLQ 318
Query: 399 AFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAVSISTV 458
+ GFTLR+ Y ++G L+LF+AMGI FS+ V+ E D T F +IP S+WWA ++++TV
Sbjct: 319 SLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDEDDTKFKSIPASFWWATITMTTV 378
Query: 459 GYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRE 514
GYGD+YP+T LG+ LC G+++ +PI I+ N FS++Y + K E RRE
Sbjct: 379 GYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKAIKRRE 434
>gi|25952108 potassium voltage-gated channel delayed-rectifier
protein S3 [Homo sapiens]
Length = 491
Score = 328 bits (841), Expect = 8e-90
Identities = 171/414 (41%), Positives = 257/414 (62%), Gaps = 21/414 (5%)
Query: 99 LNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVF 158
+N+NVGG +D L FP TRLG+L T S L LCDDY EY+FDR+P++F
Sbjct: 17 VNLNVGGFKQSVDQSTLLRFPHTRLGKLLTCHSEEAILELCDDYSVADKEYYFDRNPSLF 76
Query: 159 QLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQ- 217
+ V NFY +G L V++ LC F +E+ YWG+ + CC ++ER++E E+ Q
Sbjct: 77 RYVLNFYYTGKLHVMEELCVFSFCQEIEYWGINELFIDSCCSNRYQERKEENHEKDWDQK 136
Query: 218 -HELRAQAQVEEAE------ELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFV 270
H++ + EE+ E F +RF G R+++W ME P ++AK I ++S + V
Sbjct: 137 SHDVSTDSSFEESSLFEKELEKFDTLRF-GQLRKKIWIRMENPAYCLSAKLIAISSLSVV 195
Query: 271 LVSVVALALNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRF 330
L S+VA+ ++++ E Q G+ + P+LE VE+ C+ +FT E +RLA+ P ++F
Sbjct: 196 LASIVAMCVHSMSEFQNEDGEVDD-----PVLEGVEIACIAWFTGELAVRLAAAPCQKKF 250
Query: 331 ARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKL 390
++ LN++D V+I+P Y L ++ E + +G+V++++RLMRIFRILKL
Sbjct: 251 WKNPLNIIDFVSIIPFYATLAVDTKEEESED-------IENMGKVVQILRLMRIFRILKL 303
Query: 391 ARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWW 450
ARHS GLR+ G TLR Y +VG LLLF+++GI FS +YSVE D +++ T+IP WWW
Sbjct: 304 ARHSVGLRSLGATLRHSYHEVGLLLLFLSVGISIFSVLIYSVEKDDHTSSLTSIPICWWW 363
Query: 451 AAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLK 504
A +S++TVGYGD +P T G+ A CI GI++ +PI+I++NKFS YY K K
Sbjct: 364 ATISMTTVGYGDTHPVTLAGKLIASTCIICGILVVALPITIIFNKFSKYYQKQK 417
>gi|7657289 potassium channel, subfamily V, member 1 [Homo sapiens]
Length = 500
Score = 321 bits (823), Expect = 9e-88
Identities = 182/441 (41%), Positives = 260/441 (58%), Gaps = 33/441 (7%)
Query: 87 EGPSDPPALLSTLNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQ----------L 136
EG +P AL VNVGG + L L+ FP TRLG+LA + R+ L
Sbjct: 29 EGEGEPLALGDCFTVNVGGSRFVLSQQALSCFPHTRLGKLAVVVASYRRPGALAAVPSPL 88
Query: 137 SLCDDYEEQTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTP 196
LCDD +EYFFDR F+ V ++Y +G L V++ LC FL+E+ YWG+
Sbjct: 89 ELCDDANPVDNEYFFDRSSQAFRYVLHYYRTGRLHVMEQLCALSFLQEIQYWGIDELSID 148
Query: 197 RCCRICFEERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYGP---QRRRLWNLMEKP 253
CCR + RR ELSE L + + Q E+E+ F GP R++LWN++EKP
Sbjct: 149 SCCRDRYF-RRKELSETLDFKKDTEDQESQHESEQDFSQ----GPCPTVRQKLWNILEKP 203
Query: 254 FSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFF 313
SS AA+ GV S FV+VS++ +AL + E DL+ +LE +E +C+ +F
Sbjct: 204 GSSTAARIFGVISIIFVVVSIINMALMSAELSWL---------DLQ-LLEILEYVCISWF 253
Query: 314 TLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVG 373
T E++LR D RF R N++DL+AILP Y+ LL+E +G QT + VG
Sbjct: 254 TGEFVLRFLCVRDRCRFLRKVPNIIDLLAILPFYITLLVESLSGS-----QTTQELENVG 308
Query: 374 QVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVE 433
++++V+RL+R R+LKL RHSTGLR+ G T+ QCY++VG LLLF+++GI FS Y E
Sbjct: 309 RIVQVLRLLRALRMLKLGRHSTGLRSLGMTITQCYEEVGLLLLFLSVGISIFSTVEYFAE 368
Query: 434 HDVPSTNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILY 493
+P T FT++P +WWWA S++TVGYGD+ P+T G+ AF+CI GI++ +PI+I+
Sbjct: 369 QSIPDTTFTSVPCAWWWATTSMTTVGYGDIRPDTTTGKIVAFMCILSGILVLALPIAIIN 428
Query: 494 NKFSDYYSKLKAYEYTTIRRE 514
++FS Y LK E +RE
Sbjct: 429 DRFSACYFTLKLKEAAVRQRE 449
>gi|13492973 potassium voltage-gated channel delayed-rectifier
protein S1 [Homo sapiens]
Length = 526
Score = 295 bits (755), Expect = 7e-80
Identities = 173/428 (40%), Positives = 241/428 (56%), Gaps = 27/428 (6%)
Query: 99 LNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVF 158
L VNVGG QL LA FP TRLGRL + S + LCDDY+E E++FDR P F
Sbjct: 52 LRVNVGGVRRQLSARALARFPGTRLGRLQAAASEEQARRLCDDYDEAAREFYFDRHPGFF 111
Query: 159 QLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQH 218
+ +FY +G L VLD LC F +E YWG+ CCR + ERR L++
Sbjct: 112 LSLLHFYRTGHLHVLDELCVFAFGQEADYWGLGENALAACCRARYLERR--LTQPHAWDE 169
Query: 219 ELRAQAQV----EEAEELFRDMRFYGPQ-----RRRLWNLMEKPFSSVAAKAIGVASSTF 269
+ + V +E ++ R++ YG RRRLW ME P S+ +K S +
Sbjct: 170 DSDTPSSVDPCPDEISDVQRELARYGAARCGRLRRRLWLTMENPGYSLPSKLFSCVSISV 229
Query: 270 VLVSVVALALNTVEEMQQH----------SGQGEGGPDLRPILEHVEMLCMGFFTLEYLL 319
VL S+ A+ ++++ E Q +G+ G P+L +E C+ +F+ E
Sbjct: 230 VLASIAAMCIHSLPEYQAREAAAAVAAVAAGRSPEGVRDDPVLRRLEYFCIAWFSFEVSS 289
Query: 320 RLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVM 379
RL P R F LNL+D+V++LP YL LL G+ Q G+ G +GK V++V
Sbjct: 290 RLLLAPSTRNFFCHPLNLIDIVSVLPFYLTLLAGVALGD--QGGKEFGHLGK---VVQVF 344
Query: 380 RLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPST 439
RLMRIFR+LKLARHSTGLR+ G TL+ Y++VG LLL++A+G+ FS Y+ E +
Sbjct: 345 RLMRIFRVLKLARHSTGLRSLGATLKHSYREVGILLLYLAVGVSVFSGVAYTAEKE-EDV 403
Query: 440 NFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDY 499
F TIP WWW VS++TVGYGD+ P T G+ A CI GI++ +PI+I++NKFS +
Sbjct: 404 GFNTIPACWWWGTVSMTTVGYGDVVPVTVAGKLAASGCILGGILVVALPITIIFNKFSHF 463
Query: 500 YSKLKAYE 507
Y + KA E
Sbjct: 464 YRRQKALE 471
>gi|45383011 potassium voltage-gated channel, delayed-rectifier,
subfamily S, member 2 [Homo sapiens]
Length = 477
Score = 290 bits (741), Expect = 3e-78
Identities = 158/417 (37%), Positives = 243/417 (58%), Gaps = 19/417 (4%)
Query: 99 LNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVF 158
+ +NVGG +L L FP+TRLGRL SR L LCDDY++ E++FDR+P +F
Sbjct: 19 IRINVGGFKRRLRSHTLLRFPETRLGRLLLCHSREAILELCDDYDDVQREFYFDRNPELF 78
Query: 159 QLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQH 218
V +FY +G L V+ LC F +E+ YWG+ + CC + R+ E E+ K
Sbjct: 79 PYVLHFYHTGKLHVMAELCVFSFSQEIEYWGINEFFIDSCCSYSYHGRKVE-PEQEKWDE 137
Query: 219 ELRAQAQVEEAEELFR--------DMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFV 270
+ ++ +E+ D + G RR+LW ++ P SV ++ + S V
Sbjct: 138 QSDQESTTSSFDEILAFYNDASKFDGQPLGNFRRQLWLALDNPGYSVLSRVFSILSILVV 197
Query: 271 LVSVVALALNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRF 330
+ S++ + LN++ + Q QG G D P E VE + +FT E + R A PD +F
Sbjct: 198 MGSIITMCLNSLPDFQIPDSQGNPGED--PRFEIVEHFGIAWFTFELVARFAVAPDFLKF 255
Query: 331 ARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKL 390
++ALNL+DL++I+P Y+ L++ ++ ++ +G+V +V+RLMRIFRILKL
Sbjct: 256 FKNALNLIDLMSIVPFYITLVVNLVV-------ESTPTLANLGRVAQVLRLMRIFRILKL 308
Query: 391 ARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWW 450
ARHSTGLR+ G TL+ Y++VG LLL++++GI FS Y++E + + TIP WWW
Sbjct: 309 ARHSTGLRSLGATLKYSYKEVGLLLLYLSVGISIFSVVAYTIEKE-ENEGLATIPACWWW 367
Query: 451 AAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYE 507
A VS++TVGYGD+ P T G+ A CI GI++ +PI++++NKFS +Y + K E
Sbjct: 368 ATVSMTTVGYGDVVPGTTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLE 424
>gi|20070166 potassium voltage-gated channel, subfamily F, member 1
[Homo sapiens]
Length = 494
Score = 284 bits (726), Expect = 2e-76
Identities = 162/432 (37%), Positives = 245/432 (56%), Gaps = 17/432 (3%)
Query: 78 AGEVTTAKPEGPSDPPALLSTLNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQ-- 135
+GE + +P S + + VNVGG L L+ +P+TRL L +
Sbjct: 4 SGERSLPEPGSQSSAASDDIEIVVNVGGVRQVLYGDLLSQYPETRLAELINCLAGGYDTI 63
Query: 136 LSLCDDYEEQTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYT 195
SLCDDY+ E++FDRDP F+ V Y G + + G+CP F E+ +W V LK+
Sbjct: 64 FSLCDDYDPGKREFYFDRDPDAFKCVIEVYYFGEVHMKKGICPICFKNEMDFWKVDLKFL 123
Query: 196 PRCCRICFEERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFS 255
CC+ E+R+EL E + + V+ AE +R + + +W +EKP S
Sbjct: 124 DDCCKSHLSEKREELEEIARRVQLILDDLGVDAAEGRWRRCQ------KCVWKFLEKPES 177
Query: 256 SVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTL 315
S A+ + V S +LVS V + + T+ E+Q EG P LE+VE C+G+FTL
Sbjct: 178 SCPARVVAVLSFLLILVSSVVMCMGTIPELQVLDA--EGNRVEHPTLENVETACIGWFTL 235
Query: 316 EYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQV 375
EYLLRL S+P+ FA S +N+VD++AILP Y+ L L G + + V Q
Sbjct: 236 EYLLRLFSSPNKLHFALSFMNIVDVLAILPFYVSLTLT-------HLGARMMELTNVQQA 288
Query: 376 LRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHD 435
++ +R+MRI RI KLARHS+GL+ + L++ ++++G LL+++A+GIF FSA Y++E
Sbjct: 289 VQALRIMRIARIFKLARHSSGLQTLTYALKRSFKELGLLLMYLAVGIFVFSALGYTMEQS 348
Query: 436 VPSTNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNK 495
P T F +IP S+WWA ++++TVGYGD+YP+T LG+ A + G+I +PI + N
Sbjct: 349 HPETLFKSIPQSFWWAIITMTTVGYGDIYPKTTLGKLNAAISFLCGVIAIALPIHPIINN 408
Query: 496 FSDYYSKLKAYE 507
F YY+K + E
Sbjct: 409 FVRYYNKQRVLE 420
>gi|27436988 potassium voltage-gated channel, subfamily G, member 1
[Homo sapiens]
Length = 513
Score = 269 bits (688), Expect = 4e-72
Identities = 149/406 (36%), Positives = 235/406 (57%), Gaps = 3/406 (0%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+NVGG Y L + L FP TRLG+L T+ L++CDDY+ +E+FFDR+P F
Sbjct: 67 INVGGIKYSLPWTTLDEFPLTRLGQLKACTNFDDILNVCDDYDVTCNEFFFDRNPGAFGT 126
Query: 161 VYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHEL 220
+ F +G L +L +C F EEL YWG+ + CC+ + ++ +E +E ++ + E
Sbjct: 127 ILTFLRAGKLRLLREMCALSFQEELLYWGIAEDHLDGCCKRRYLQKIEEFAEMVEREEED 186
Query: 221 RA-QAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALAL 279
A ++ ++E G RRL +++E+P S + K S FV V+ V L++
Sbjct: 187 DALDSEGRDSEGPAEGEGRLGRCMRRLRDMVERPHSGLPGKVFACLSVLFVTVTAVNLSV 246
Query: 280 NTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVD 339
+T+ +++ QG + VE +C+G+F+LE+LLRL P F RS L L+D
Sbjct: 247 STLPSLREEEEQGHCSQMCHNVFI-VESVCVGWFSLEFLLRLIQAPSKFAFLRSPLTLID 305
Query: 340 LVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRA 399
LVAILP Y+ LL++ + G + KVG VLRV+R +RI +++LARHS GL+
Sbjct: 306 LVAILPYYITLLVDGAAAGRRKPGAGNSYLDKVGLVLRVLRALRILYVMRLARHSLGLQT 365
Query: 400 FGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDV-PSTNFTTIPHSWWWAAVSISTV 458
G T R+C ++ G LLLF+ + I F+ +Y +E+++ S FT+IP +WWA ++++TV
Sbjct: 366 LGLTARRCTREFGLLLLFLCVAIALFAPLLYVIENEMADSPEFTSIPACYWWAVITMTTV 425
Query: 459 GYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLK 504
GYGDM P + G+ A I GI+L P++ +++ FS Y +LK
Sbjct: 426 GYGDMVPRSTPGQVVALSSILSGILLMAFPVTSIFHTFSRSYLELK 471
>gi|27436996 potassium voltage-gated channel, subfamily G, member 4
[Homo sapiens]
Length = 519
Score = 265 bits (677), Expect = 8e-71
Identities = 149/416 (35%), Positives = 227/416 (54%), Gaps = 3/416 (0%)
Query: 90 SDPPALLSTLNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEY 149
+ P L + +NVGG Y L + L FP +RL +L S + LCDDY+E + E+
Sbjct: 52 ASPVDLKKEILINVGGRRYLLPWSTLDRFPLSRLSKLRLCRSYEEIVQLCDDYDEDSQEF 111
Query: 150 FFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDE 209
FFDR P+ F ++ +F +G L++L +C F EEL YWG+ + RCC + +E
Sbjct: 112 FFDRSPSAFGVIVSFLAAGKLVLLQEMCALSFQEELAYWGIEEAHLERCCLRKLLRKLEE 171
Query: 210 LSERLKIQHELRAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTF 269
L E K+ E + Q E R +G RL ++E P S + K S F
Sbjct: 172 LEELAKLHREDVLRQQRETRRPASHSSR-WGLCMNRLREMVENPQSGLPGKVFACLSILF 230
Query: 270 VLVSVVALALNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRR 329
V + V+L ++T+ +++ QGE I VE +C+ +F+LE+ LR D +
Sbjct: 231 VATTAVSLCVSTMPDLRAEEDQGECSRKCYYIFI-VETICVAWFSLEFCLRFVQAQDKCQ 289
Query: 330 FARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILK 389
F + LN++D++AI P Y+ L + E +R + KVG VLRV+R +RI +++
Sbjct: 290 FFQGPLNIIDILAISPYYVSLAVSEEPPEDGERPSGSSYLEKVGLVLRVLRALRILYVMR 349
Query: 390 LARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPST-NFTTIPHSW 448
LARHS GL+ G T+R+C ++ G LLLF+A+ I FS VY E + FT+IP S+
Sbjct: 350 LARHSLGLQTLGLTVRRCTREFGLLLLFLAVAITLFSPLVYVAEKESGRVLEFTSIPASY 409
Query: 449 WWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLK 504
WWA +S++TVGYGDM P + G+ A I GI++ P + +++ FS Y +LK
Sbjct: 410 WWAIISMTTVGYGDMVPRSVPGQMVALSSILSGILIMAFPATSIFHTFSHSYLELK 465
>gi|6912444 potassium voltage-gated channel, subfamily G, member 2
[Homo sapiens]
Length = 466
Score = 253 bits (647), Expect = 2e-67
Identities = 143/411 (34%), Positives = 226/411 (54%), Gaps = 22/411 (5%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+NVGG +L + LA P RL RL L +CDDY+ DE+FFDR P F+
Sbjct: 21 INVGGCRVRLAWAALARCPLARLERLRACRGHDDLLRVCDDYDVSRDEFFFDRSPCAFRA 80
Query: 161 VYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHEL 220
+ +G L +L G C F +EL YWG+ RCC R +E +E
Sbjct: 81 IVALLRAGKLRLLRGPCALAFRDELAYWGIDEARLERCCLRRLRRREEEAAE-------- 132
Query: 221 RAQAQVEEAEELFRDMRFYGPQ------RRRLWNLMEKPFSSVAAKAIGVASSTFVLVSV 274
A+A E R GP+ RRRL ++++ P S +A K S +FV V+
Sbjct: 133 -ARAGPTERGAQGSPARALGPRGRLQRGRRRLRDVVDNPHSGLAGKLFACVSVSFVAVTA 191
Query: 275 VALALNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSA 334
V L L+T+ +++ +GE P R + +E +C+ +F+ E+LLR F R+
Sbjct: 192 VGLCLSTMPDIRAEEERGECSPKCRSLFV-LETVCVAWFSFEFLLRSLQAESKCAFLRAP 250
Query: 335 LNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHS 394
LN++D++A+LP Y+ LLL G G + + + G VLR++R +R+ +++LARHS
Sbjct: 251 LNIIDILALLPFYVSLLLGLAAGPGGTK-----LLERAGLVLRLLRALRVLYVMRLARHS 305
Query: 395 TGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPS-TNFTTIPHSWWWAAV 453
GLR+ G T+R+C ++ G LLLF+ + + F+ V+ E ++ + +F+++P S+WWA +
Sbjct: 306 LGLRSLGLTMRRCAREFGLLLLFLCVAMALFAPLVHLAERELGARRDFSSVPASYWWAVI 365
Query: 454 SISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLK 504
S++TVGYGDM P + G+ A I GI+L P++ +++ FS YS+LK
Sbjct: 366 SMTTVGYGDMVPRSLPGQVVALSSILSGILLMAFPVTSIFHTFSRSYSELK 416
>gi|27436993 potassium voltage-gated channel, subfamily G, member 3
isoform 2 [Homo sapiens]
Length = 425
Score = 239 bits (610), Expect = 5e-63
Identities = 148/417 (35%), Positives = 225/417 (53%), Gaps = 33/417 (7%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+NVGG Y L L FP R+ RL S L +CDDY+ + +EYFFDR F
Sbjct: 13 LNVGGARYSLSRELLKDFPLRRVSRLHGCRSERDVLEVCDDYDRERNEYFFDRHSEAFGF 72
Query: 161 VYNFYLS-GVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHE 219
+ + G L +C F E+ YWG+ + CC +RR L +R+ +
Sbjct: 73 ILLYVRGHGKLRFAPRMCELSFYNEMIYWGLEGAHLEYCC-----QRR--LDDRMSDTYT 125
Query: 220 LRAQAQVEEAEELFRDMRFYG-----PQRR---RLWNLMEKPFSSVAAKAIGVASSTFVL 271
+ +E L RD G P RR R+ E+P SS+AA+ + S FV+
Sbjct: 126 FYS---ADEPGVLGRDEARPGGAEAAPSRRWLERMRRTFEEPTSSLAAQILASVSVVFVI 182
Query: 272 VSVVALALNTVEEMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFA 331
VS+V L +T+ + + + D I +E +C+G+FT E ++R + + F
Sbjct: 183 VSMVVLCASTLPDWRNAAADNRSLDDRSRI---IEAICIGWFTAECIVRFIVSKNKCEFV 239
Query: 332 RSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLA 391
+ LN++DL+AI P Y+ +L+ FTGE Q + + G LRV+R+MRIF ++KLA
Sbjct: 240 KRPLNIIDLLAITPYYISVLMTVFTGENSQ-------LQRAGVTLRVLRMMRIFWVIKLA 292
Query: 392 RHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEH--DVPSTN--FTTIPHS 447
RH GL+ G TL++CY+++ LL+FI + + FSA +EH D+ ++N FT+IP +
Sbjct: 293 RHFIGLQTLGLTLKRCYREMVMLLVFICVAMAIFSALSQLLEHGLDLETSNKDFTSIPAA 352
Query: 448 WWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLK 504
WW +S++TVGYGDMYP T GR +C+ GI+L +PI+ +Y+ F Y +LK
Sbjct: 353 CWWVIISMTTVGYGDMYPITVPGRILGGVCVVSGIVLLALPITFIYHSFVQCYHELK 409
>gi|19071574 potassium voltage-gated channel, subfamily G, member 3
isoform 1 [Homo sapiens]
Length = 436
Score = 236 bits (602), Expect = 4e-62
Identities = 149/426 (34%), Positives = 226/426 (53%), Gaps = 40/426 (9%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+NVGG Y L L FP R+ RL S L +CDDY+ + +EYFFDR F
Sbjct: 13 LNVGGARYSLSRELLKDFPLRRVSRLHGCRSERDVLEVCDDYDRERNEYFFDRHSEAFGF 72
Query: 161 VYNFYLS-GVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHE 219
+ + G L +C F E+ YWG+ + CC +RR L +R+ +
Sbjct: 73 ILLYVRGHGKLRFAPRMCELSFYNEMIYWGLEGAHLEYCC-----QRR--LDDRMSDTYT 125
Query: 220 LRAQAQVEEAEELFRDMRFYG-----PQRR---RLWNLMEKPFSSVAAKAIGVASSTFVL 271
+ +E L RD G P RR R+ E+P SS+AA+ + S FV+
Sbjct: 126 FYS---ADEPGVLGRDEARPGGAEAAPSRRWLERMRRTFEEPTSSLAAQILASVSVVFVI 182
Query: 272 VSVVALALNTVEEMQQHSGQGEG---------GPDLRPILEHVEMLCMGFFTLEYLLRLA 322
VS+V L +T+ + + + GP P +E +C+G+FT E ++R
Sbjct: 183 VSMVVLCASTLPDWRNAAADNRSLDDRSRYSAGPGREPS-GIIEAICIGWFTAECIVRFI 241
Query: 323 STPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLM 382
+ + F + LN++DL+AI P Y+ +L+ FTGE Q + + G LRV+R+M
Sbjct: 242 VSKNKCEFVKRPLNIIDLLAITPYYISVLMTVFTGENSQ-------LQRAGVTLRVLRMM 294
Query: 383 RIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEH--DVPSTN 440
RIF ++KLARH GL+ G TL++CY+++ LL+FI + + FSA +EH D+ ++N
Sbjct: 295 RIFWVIKLARHFIGLQTLGLTLKRCYREMVMLLVFICVAMAIFSALSQLLEHGLDLETSN 354
Query: 441 --FTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSD 498
FT+IP + WW +S++TVGYGDMYP T GR +C+ GI+L +PI+ +Y+ F
Sbjct: 355 KDFTSIPAACWWVIISMTTVGYGDMYPITVPGRILGGVCVVSGIVLLALPITFIYHSFVQ 414
Query: 499 YYSKLK 504
Y +LK
Sbjct: 415 CYHELK 420
>gi|4826786 Shaw-related voltage-gated potassium channel protein 1
isoform B [Homo sapiens]
Length = 511
Score = 214 bits (546), Expect = 1e-55
Identities = 144/448 (32%), Positives = 214/448 (47%), Gaps = 62/448 (13%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+NVGG +Q L P TRL LA + S DY+ + DE+FFDR P VF
Sbjct: 12 INVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHF-----DYDPRADEFFFDRHPGVFAH 66
Query: 161 VYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHEL 220
+ N+Y +G L +C + EEL +WG+ CC + + + RD E L
Sbjct: 67 ILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDA-EEALDSFGGA 125
Query: 221 RAQAQVEEAE------------ELFRDMR-------------FYGPQRRRLWNLMEKPFS 255
++A+ EL R F+ + R+W L E P+S
Sbjct: 126 PLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYS 185
Query: 256 SVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE-----GGPDLR--------PIL 302
S A+ + AS F+LVS+ L T E + E G +R L
Sbjct: 186 SRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFL 245
Query: 303 EHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQR 362
++E +C+ +FT E+L+R+ P+ F +++LN++D VAILP YL++ L
Sbjct: 246 TYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLS--------- 296
Query: 363 GQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGI 422
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A+G+
Sbjct: 297 GLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGV 356
Query: 423 FTFSAAVYSVEH-----DVPS----TNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFF 473
F+ +Y E + PS T+F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 357 LIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLV 416
Query: 474 AFLCIAFGIILNGMPISILYNKFSDYYS 501
LC G++ MP+ ++ N F YYS
Sbjct: 417 GALCALAGVLTIAMPVPVIVNNFGMYYS 444
>gi|163792201 Shaw-related voltage-gated potassium channel protein 1
isoform A [Homo sapiens]
Length = 585
Score = 214 bits (546), Expect = 1e-55
Identities = 144/448 (32%), Positives = 214/448 (47%), Gaps = 62/448 (13%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+NVGG +Q L P TRL LA + S DY+ + DE+FFDR P VF
Sbjct: 12 INVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHF-----DYDPRADEFFFDRHPGVFAH 66
Query: 161 VYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHEL 220
+ N+Y +G L +C + EEL +WG+ CC + + + RD E L
Sbjct: 67 ILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDA-EEALDSFGGA 125
Query: 221 RAQAQVEEAE------------ELFRDMR-------------FYGPQRRRLWNLMEKPFS 255
++A+ EL R F+ + R+W L E P+S
Sbjct: 126 PLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYS 185
Query: 256 SVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE-----GGPDLR--------PIL 302
S A+ + AS F+LVS+ L T E + E G +R L
Sbjct: 186 SRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFL 245
Query: 303 EHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQR 362
++E +C+ +FT E+L+R+ P+ F +++LN++D VAILP YL++ L
Sbjct: 246 TYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLS--------- 296
Query: 363 GQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGI 422
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A+G+
Sbjct: 297 GLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGV 356
Query: 423 FTFSAAVYSVEH-----DVPS----TNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFF 473
F+ +Y E + PS T+F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 357 LIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLV 416
Query: 474 AFLCIAFGIILNGMPISILYNKFSDYYS 501
LC G++ MP+ ++ N F YYS
Sbjct: 417 GALCALAGVLTIAMPVPVIVNNFGMYYS 444
>gi|27436981 potassium voltage-gated channel, Shal-related
subfamily, member 1 [Homo sapiens]
Length = 647
Score = 211 bits (538), Expect = 1e-54
Identities = 135/407 (33%), Positives = 205/407 (50%), Gaps = 38/407 (9%)
Query: 99 LNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVF 158
L VNV G ++ L +P T LG S ++ Y+ + EYFFDRDP +F
Sbjct: 42 LVVNVSGRRFETWKNTLDRYPDTLLG------SSEKEFF----YDADSGEYFFDRDPDMF 91
Query: 159 QLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQH 218
+ V NFY +G L C + F EEL ++G+ + CC + +R+ E +ERL
Sbjct: 92 RHVLNFYRTGRLHCPRQECIQAFDEELAFYGLVPELVGDCCLEEYRDRKKENAERL---- 147
Query: 219 ELRAQAQVEEAEELFRDMRFYGPQ--RRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVA 276
A+ EEAE+ R+RLW E P +S AA + F+ VSV+A
Sbjct: 148 -----AEDEEAEQAGDGPALPAGSSLRQRLWRAFENPHTSTAALVFYYVTGFFIAVSVIA 202
Query: 277 LALNTVE---EMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFARS 333
+ T+ ++ S + G ++ C+ FT EYLLRL + P RF RS
Sbjct: 203 NVVETIPCRGSARRSSREQPCGERFPQAFFCMDTACVLIFTGEYLLRLFAAPSRCRFLRS 262
Query: 334 ALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARH 393
++L+D+VAILP Y+ LL V V +R+ R+FRI K +RH
Sbjct: 263 VMSLIDVVAILPYYIGLL--------------VPKNDDVSGAFVTLRVFRVFRIFKFSRH 308
Query: 394 STGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAV 453
S GLR G+TL+ C ++G LL + M I F+ ++ E TNFT+IP ++W+ V
Sbjct: 309 SQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGTNKTNFTSIPAAFWYTIV 368
Query: 454 SISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYY 500
+++T+GYGDM P T G+ F +C G+++ +P+ ++ + FS Y
Sbjct: 369 TMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 415
>gi|88758576 Shaw-related voltage-gated potassium channel protein 4
isoform c [Homo sapiens]
Length = 626
Score = 209 bits (533), Expect = 4e-54
Identities = 148/465 (31%), Positives = 215/465 (46%), Gaps = 60/465 (12%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTD------EYFFDRD 154
+NVGG ++ L P TRL LA R + E+FFDR
Sbjct: 40 INVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPETDGGGVGSSGSSGGGGCEFFFDRH 99
Query: 155 PAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERL 214
P VF V N+Y +G L +C F EEL +WG+ CC + + + RD E L
Sbjct: 100 PGVFAYVLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDA-EEAL 158
Query: 215 KIQHEL----RAQAQVEEAEELFRDMRFY--GPQ----------------RRRLWNLMEK 252
I +EA + R++ GP + R+W L E
Sbjct: 159 DIFESPDGGGSGAGPSDEAGDDERELALQRLGPHEGGAGHGAGSGGCRGWQPRMWALFED 218
Query: 253 PFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE-------------GGPDLR 299
P+SS AA+ + AS F+LVS+ L T E E +
Sbjct: 219 PYSSRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEILRVGNITSVHFRREVETE 278
Query: 300 PILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEG 359
PIL ++E +C+ +FTLE+L+R+ PD F ++ LN++D VAILP YL++ L
Sbjct: 279 PILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLS------ 332
Query: 360 HQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIA 419
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A
Sbjct: 333 ---GLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLA 389
Query: 420 MGIFTFSAAVYSVEH--DVPS-------TNFTTIPHSWWWAAVSISTVGYGDMYPETHLG 470
+G+ F+ +Y E PS T+F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 390 LGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSG 449
Query: 471 RFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRER 515
LC G++ MP+ ++ N F YYS A + +R++
Sbjct: 450 MLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKK 494
>gi|24497462 Shaw-related voltage-gated potassium channel protein 4
isoform a [Homo sapiens]
Length = 635
Score = 209 bits (533), Expect = 4e-54
Identities = 148/465 (31%), Positives = 215/465 (46%), Gaps = 60/465 (12%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTD------EYFFDRD 154
+NVGG ++ L P TRL LA R + E+FFDR
Sbjct: 40 INVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPETDGGGVGSSGSSGGGGCEFFFDRH 99
Query: 155 PAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERL 214
P VF V N+Y +G L +C F EEL +WG+ CC + + + RD E L
Sbjct: 100 PGVFAYVLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDA-EEAL 158
Query: 215 KIQHEL----RAQAQVEEAEELFRDMRFY--GPQ----------------RRRLWNLMEK 252
I +EA + R++ GP + R+W L E
Sbjct: 159 DIFESPDGGGSGAGPSDEAGDDERELALQRLGPHEGGAGHGAGSGGCRGWQPRMWALFED 218
Query: 253 PFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE-------------GGPDLR 299
P+SS AA+ + AS F+LVS+ L T E E +
Sbjct: 219 PYSSRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEILRVGNITSVHFRREVETE 278
Query: 300 PILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEG 359
PIL ++E +C+ +FTLE+L+R+ PD F ++ LN++D VAILP YL++ L
Sbjct: 279 PILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLS------ 332
Query: 360 HQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIA 419
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A
Sbjct: 333 ---GLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLA 389
Query: 420 MGIFTFSAAVYSVEH--DVPS-------TNFTTIPHSWWWAAVSISTVGYGDMYPETHLG 470
+G+ F+ +Y E PS T+F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 390 LGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSG 449
Query: 471 RFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRER 515
LC G++ MP+ ++ N F YYS A + +R++
Sbjct: 450 MLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKK 494
>gi|24497464 Shaw-related voltage-gated potassium channel protein 4
isoform b [Homo sapiens]
Length = 582
Score = 209 bits (533), Expect = 4e-54
Identities = 148/465 (31%), Positives = 215/465 (46%), Gaps = 60/465 (12%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTD------EYFFDRD 154
+NVGG ++ L P TRL LA R + E+FFDR
Sbjct: 40 INVGGTRHETYRSTLRTLPGTRLAWLADPDGGGRPETDGGGVGSSGSSGGGGCEFFFDRH 99
Query: 155 PAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERL 214
P VF V N+Y +G L +C F EEL +WG+ CC + + + RD E L
Sbjct: 100 PGVFAYVLNYYRTGKLHCPADVCGPLFEEELTFWGIDETDVEPCCWMTYRQHRDA-EEAL 158
Query: 215 KIQHEL----RAQAQVEEAEELFRDMRFY--GPQ----------------RRRLWNLMEK 252
I +EA + R++ GP + R+W L E
Sbjct: 159 DIFESPDGGGSGAGPSDEAGDDERELALQRLGPHEGGAGHGAGSGGCRGWQPRMWALFED 218
Query: 253 PFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE-------------GGPDLR 299
P+SS AA+ + AS F+LVS+ L T E E +
Sbjct: 219 PYSSRAARVVAFASLFFILVSITTFCLETHEAFNIDRNVTEILRVGNITSVHFRREVETE 278
Query: 300 PILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEG 359
PIL ++E +C+ +FTLE+L+R+ PD F ++ LN++D VAILP YL++ L
Sbjct: 279 PILTYIEGVCVLWFTLEFLVRIVCCPDTLDFVKNLLNIIDFVAILPFYLEVGLS------ 332
Query: 360 HQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIA 419
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A
Sbjct: 333 ---GLSSKAARDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLA 389
Query: 420 MGIFTFSAAVYSVEH--DVPS-------TNFTTIPHSWWWAAVSISTVGYGDMYPETHLG 470
+G+ F+ +Y E PS T+F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 390 LGVLIFATMIYYAERIGARPSDPRGNDHTDFKNIPIGFWWAVVTMTTLGYGDMYPKTWSG 449
Query: 471 RFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRER 515
LC G++ MP+ ++ N F YYS A + +R++
Sbjct: 450 MLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKRKK 494
>gi|21217561 Shaw-related voltage-gated potassium channel protein 2
isoform KV3.2a [Homo sapiens]
Length = 613
Score = 208 bits (530), Expect = 9e-54
Identities = 139/405 (34%), Positives = 202/405 (49%), Gaps = 47/405 (11%)
Query: 148 EYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERR 207
E+FFDR P VF V N+Y +G L +C F EEL +WG+ CC + + + R
Sbjct: 101 EFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHR 160
Query: 208 DELSERLKI-------------QHELRAQAQ-VEEAEELFRDMRFYGPQRR---RLWNLM 250
D E L I +L A+ +E+A L G RR R+W L
Sbjct: 161 DA-EEALDIFETPDLIGGDPGDDEDLAAKRLGIEDAAGLGGPDGKSGRWRRLQPRMWALF 219
Query: 251 EKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE---GGPDL--------R 299
E P+SS AA+ I AS F+LVS+ L T E + E G +
Sbjct: 220 EDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVKNKTEPVINGTSVVLQYEIETD 279
Query: 300 PILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEG 359
P L +VE +C+ +FT E+L+R+ +P+ F ++ LN++D VAILP YL++ L
Sbjct: 280 PALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAILPFYLEVGLS------ 333
Query: 360 HQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIA 419
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A
Sbjct: 334 ---GLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLA 390
Query: 420 MGIFTFSAAVYSVEH-----DVPS----TNFTTIPHSWWWAAVSISTVGYGDMYPETHLG 470
+G+ F+ +Y E + PS T F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 391 LGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSG 450
Query: 471 RFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRER 515
LC G++ MP+ ++ N F YYS A + +R++
Sbjct: 451 MLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKK 495
>gi|21217563 Shaw-related voltage-gated potassium channel protein 2
isoform KV3.2b [Homo sapiens]
Length = 638
Score = 208 bits (530), Expect = 9e-54
Identities = 139/405 (34%), Positives = 202/405 (49%), Gaps = 47/405 (11%)
Query: 148 EYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERR 207
E+FFDR P VF V N+Y +G L +C F EEL +WG+ CC + + + R
Sbjct: 101 EFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHR 160
Query: 208 DELSERLKI-------------QHELRAQAQ-VEEAEELFRDMRFYGPQRR---RLWNLM 250
D E L I +L A+ +E+A L G RR R+W L
Sbjct: 161 DA-EEALDIFETPDLIGGDPGDDEDLAAKRLGIEDAAGLGGPDGKSGRWRRLQPRMWALF 219
Query: 251 EKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE---GGPDL--------R 299
E P+SS AA+ I AS F+LVS+ L T E + E G +
Sbjct: 220 EDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVKNKTEPVINGTSVVLQYEIETD 279
Query: 300 PILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEG 359
P L +VE +C+ +FT E+L+R+ +P+ F ++ LN++D VAILP YL++ L
Sbjct: 280 PALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAILPFYLEVGLS------ 333
Query: 360 HQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIA 419
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A
Sbjct: 334 ---GLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLA 390
Query: 420 MGIFTFSAAVYSVEH-----DVPS----TNFTTIPHSWWWAAVSISTVGYGDMYPETHLG 470
+G+ F+ +Y E + PS T F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 391 LGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSG 450
Query: 471 RFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRER 515
LC G++ MP+ ++ N F YYS A + +R++
Sbjct: 451 MLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKK 495
>gi|24497458 Shaw-related voltage-gated potassium channel protein 2
isoform KV3.2c [Homo sapiens]
Length = 558
Score = 208 bits (530), Expect = 9e-54
Identities = 139/405 (34%), Positives = 202/405 (49%), Gaps = 47/405 (11%)
Query: 148 EYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERR 207
E+FFDR P VF V N+Y +G L +C F EEL +WG+ CC + + + R
Sbjct: 101 EFFFDRHPGVFAYVLNYYRTGKLHCPADVCGPLFEEELAFWGIDETDVEPCCWMTYRQHR 160
Query: 208 DELSERLKI-------------QHELRAQAQ-VEEAEELFRDMRFYGPQRR---RLWNLM 250
D E L I +L A+ +E+A L G RR R+W L
Sbjct: 161 DA-EEALDIFETPDLIGGDPGDDEDLAAKRLGIEDAAGLGGPDGKSGRWRRLQPRMWALF 219
Query: 251 EKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQHSGQGE---GGPDL--------R 299
E P+SS AA+ I AS F+LVS+ L T E + E G +
Sbjct: 220 EDPYSSRAARFIAFASLFFILVSITTFCLETHEAFNIVKNKTEPVINGTSVVLQYEIETD 279
Query: 300 PILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEG 359
P L +VE +C+ +FT E+L+R+ +P+ F ++ LN++D VAILP YL++ L
Sbjct: 280 PALTYVEGVCVVWFTFEFLVRIVFSPNKLEFIKNLLNIIDFVAILPFYLEVGLS------ 333
Query: 360 HQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIA 419
G + + V LRV+R +RI RI KL RH GLR G TLR + L++F+A
Sbjct: 334 ---GLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLA 390
Query: 420 MGIFTFSAAVYSVEH-----DVPS----TNFTTIPHSWWWAAVSISTVGYGDMYPETHLG 470
+G+ F+ +Y E + PS T F IP +WWA V+++T+GYGDMYP+T G
Sbjct: 391 LGVLIFATMIYYAERVGAQPNDPSASEHTQFKNIPIGFWWAVVTMTTLGYGDMYPQTWSG 450
Query: 471 RFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRRER 515
LC G++ MP+ ++ N F YYS A + +R++
Sbjct: 451 MLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPRKRKK 495
>gi|9789987 potassium voltage-gated channel, Shal-related subfamily,
member 2 [Homo sapiens]
Length = 630
Score = 205 bits (521), Expect = 1e-52
Identities = 129/402 (32%), Positives = 202/402 (50%), Gaps = 35/402 (8%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+NV G +Q L +P T LG S R Y +T +YFFDRDP +F+
Sbjct: 45 LNVSGTRFQTWQDTLERYPDTLLG------SSERDFF----YHPETQQYFFDRDPDIFRH 94
Query: 161 VYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHEL 220
+ NFY +G L C + EEL ++G+ + CC +++RR E +ERL Q +
Sbjct: 95 ILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEYKDRRRENAERL--QDDA 152
Query: 221 RAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALALN 280
E A R+R+W E P +S A + F+ VSV+A +
Sbjct: 153 DTDTAGESALPTMT-------ARQRVWRAFENPHTSTMALVFYYVTGFFIAVSVIANVVE 205
Query: 281 TVE--EMQQHSGQGEGGPDLRPILEHVEMLCMGFFTLEYLLRLASTPDLRRFARSALNLV 338
TV H + G ++ C+ FT+EYLLRLA+ P RF RS ++++
Sbjct: 206 TVPCGSSPGHIKELPCGERYAVAFFCLDTACVMIFTVEYLLRLAAAPSRYRFVRSVMSII 265
Query: 339 DLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARHSTGLR 398
D+VAILP Y+ L++ T G V +R+ R+FRI K +RHS GLR
Sbjct: 266 DVVAILPYYIGLVM---TDNEDVSGAFV-----------TLRVFRVFRIFKFSRHSQGLR 311
Query: 399 AFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAVSISTV 458
G+TL+ C ++G LL + M I F+ ++ E ++ FT+IP ++W+ V+++T+
Sbjct: 312 ILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASKFTSIPAAFWYTIVTMTTL 371
Query: 459 GYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYY 500
GYGDM P+T G+ F +C G+++ +P+ ++ + FS Y
Sbjct: 372 GYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413
>gi|27436984 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 1 [Homo sapiens]
Length = 655
Score = 205 bits (521), Expect = 1e-52
Identities = 134/423 (31%), Positives = 211/423 (49%), Gaps = 48/423 (11%)
Query: 86 PEGPSDPPALLSTLNV-NVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEE 144
P P+D L V NV G +Q L +P T LG S ++ + E
Sbjct: 28 PLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG------STEKEFF----FNE 77
Query: 145 QTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFE 204
T EYFFDRDP VF+ V NFY +G L C + +EL ++G+ + CC ++
Sbjct: 78 DTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYK 137
Query: 205 ERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGV 264
+R+ E +ERL ++ E +E + F R+ +W E P +S A
Sbjct: 138 DRKRENAERLMDDNDS------ENNQESMPSLSF----RQTMWRAFENPHTSTLALVFYY 187
Query: 265 ASSTFVLVSVVALALNTVEEMQQHSGQGEGGPDLRPILEH-------VEMLCMGFFTLEY 317
+ F+ VSV+ + TV G G +L P E ++ C+ FT+EY
Sbjct: 188 VTGFFIAVSVITNVVETVP-----CGTVPGSKEL-PCGERYSVAFFCLDTACVMIFTVEY 241
Query: 318 LLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLR 377
LLRL + P RF RS ++++D+VAI+P Y+ L++ T G V
Sbjct: 242 LLRLFAAPSRYRFIRSVMSIIDVVAIMPYYIGLVM---TNNEDVSGAFV----------- 287
Query: 378 VMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVP 437
+R+ R+FRI K +RHS GLR G+TL+ C ++G LL + M I F+ ++ E
Sbjct: 288 TLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSS 347
Query: 438 STNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFS 497
++ FT+IP S+W+ V+++T+GYGDM P+T G+ F +C G+++ +P+ ++ + FS
Sbjct: 348 ASKFTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFS 407
Query: 498 DYY 500
Y
Sbjct: 408 RIY 410
>gi|27436986 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 2 [Homo sapiens]
Length = 636
Score = 205 bits (521), Expect = 1e-52
Identities = 134/423 (31%), Positives = 211/423 (49%), Gaps = 48/423 (11%)
Query: 86 PEGPSDPPALLSTLNV-NVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEE 144
P P+D L V NV G +Q L +P T LG S ++ + E
Sbjct: 28 PLAPADKNKRQDELIVLNVSGRRFQTWRTTLERYPDTLLG------STEKEFF----FNE 77
Query: 145 QTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFE 204
T EYFFDRDP VF+ V NFY +G L C + +EL ++G+ + CC ++
Sbjct: 78 DTKEYFFDRDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYK 137
Query: 205 ERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGV 264
+R+ E +ERL ++ E +E + F R+ +W E P +S A
Sbjct: 138 DRKRENAERLMDDNDS------ENNQESMPSLSF----RQTMWRAFENPHTSTLALVFYY 187
Query: 265 ASSTFVLVSVVALALNTVEEMQQHSGQGEGGPDLRPILEH-------VEMLCMGFFTLEY 317
+ F+ VSV+ + TV G G +L P E ++ C+ FT+EY
Sbjct: 188 VTGFFIAVSVITNVVETVP-----CGTVPGSKEL-PCGERYSVAFFCLDTACVMIFTVEY 241
Query: 318 LLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLR 377
LLRL + P RF RS ++++D+VAI+P Y+ L++ T G V
Sbjct: 242 LLRLFAAPSRYRFIRSVMSIIDVVAIMPYYIGLVM---TNNEDVSGAFV----------- 287
Query: 378 VMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVP 437
+R+ R+FRI K +RHS GLR G+TL+ C ++G LL + M I F+ ++ E
Sbjct: 288 TLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSS 347
Query: 438 STNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFS 497
++ FT+IP S+W+ V+++T+GYGDM P+T G+ F +C G+++ +P+ ++ + FS
Sbjct: 348 ASKFTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFS 407
Query: 498 DYY 500
Y
Sbjct: 408 RIY 410
>gi|4504817 potassium voltage-gated channel, shaker-related
subfamily, member 4 [Homo sapiens]
Length = 653
Score = 196 bits (498), Expect = 5e-50
Identities = 135/473 (28%), Positives = 230/473 (48%), Gaps = 66/473 (13%)
Query: 53 YYIEEDEDGEEEDQWKDDLAEEDQQAGEVTTAKPEGPSDPPALLSTLNVNVGGHSYQLDY 112
+Y ED+ G+E DL +D+ G ++ + + + +NV G ++
Sbjct: 140 FYYSEDDHGDECSY--TDLLPQDEGGGGYSSVRYSDCCE------RVVINVSGLRFETQM 191
Query: 113 CELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQLVYNFYLSGVLLV 172
LA FP+T LG T ++ +EYFFDR+ F + +Y SG L
Sbjct: 192 KTLAQFPETLLGDPEKRTQY---------FDPLRNEYFFDRNRPSFDAILYYYQSGGRLK 242
Query: 173 LDGLCPRR-FLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHELRAQAQVEEAEE 231
P F EE+ ++ +L E ++ EE +
Sbjct: 243 RPVNVPFDIFTEEVKFY--------------------QLGEEALLKFREDEGFVREEEDR 282
Query: 232 LFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQH--- 288
+ F ++++W L E P SS A+ I + S +L+S+V L T+ E +
Sbjct: 283 ALPENEF----KKQIWLLFEYPESSSPARGIAIVSVLVILISIVIFCLETLPEFRDDRDL 338
Query: 289 ----SGQGEGG---PDLRPILEH------------VEMLCMGFFTLEYLLRLASTPDLRR 329
S G GG P LE+ VE +C+ +F+ E+++R + P
Sbjct: 339 VMALSAGGHGGLLNDTSAPHLENSGHTIFNDPFFIVETVCIVWFSFEFVVRCFACPSQAL 398
Query: 330 FARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILK 389
F ++ +N++D+V+ILP ++ L + +G GQ ++ +LR++RL+R+FRI K
Sbjct: 399 FFKNIMNIIDIVSILPYFITLGTDLAQQQGGGNGQQQQAMSFA--ILRIIRLVRVFRIFK 456
Query: 390 LARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWW 449
L+RHS GL+ G TLR +++G L+ F+ +G+ FS+AVY E D P+T+F +IP ++W
Sbjct: 457 LSRHSKGLQILGHTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPTTHFQSIPDAFW 516
Query: 450 WAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSK 502
WA V+++TVGYGDM P T G+ LC G++ +P+ ++ + F+ +Y +
Sbjct: 517 WAVVTMTTVGYGDMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 569
>gi|25952087 potassium voltage-gated channel, shaker-related
subfamily, member 5 [Homo sapiens]
Length = 613
Score = 194 bits (494), Expect = 1e-49
Identities = 142/481 (29%), Positives = 233/481 (48%), Gaps = 76/481 (15%)
Query: 73 EEDQQAGEVTTAKPEGPSDPPALL--STLNVNVGGHSYQLDYCELAGFPKTRLGRLATST 130
E++++ G+ E + A L +++N+ G ++ LA FP T LG A
Sbjct: 94 EDEEEEGDPGLGTVEDQALGTASLHHQRVHINISGLRFETQLGTLAQFPNTLLGDPA--- 150
Query: 131 SRSRQLSLCDDYEEQTDEYFFDRDPAVFQLVYNFYLSGVLLVLDGLCPRRFLEELGYWGV 190
R R ++ +EYFFDR+ F + +Y SG L RR V
Sbjct: 151 KRLRY------FDPLRNEYFFDRNRPSFDGILYYYQSGGRL-------RR--------PV 189
Query: 191 RLKYTPRCCRICFEERRDELSERLKIQHELRAQAQVEEAEELFRDMRFYGPQRRRLWNLM 250
+ I F + DE ER + + ++E E+ F +R++W +
Sbjct: 190 NVSLDVFADEIRFYQLGDEAMERFR-----EDEGFIKEEEKPLPRNEF----QRQVWLIF 240
Query: 251 EKPFSSVAAKAIGVASSTFVLVSVVALALNTVEEMQQH--------------------SG 290
E P SS +A+AI + S +L+S++ L T+ E + +G
Sbjct: 241 EYPESSGSARAIAIVSVLVILISIITFCLETLPEFRDERELLRHPPAPHQPPAPAPGANG 300
Query: 291 QG----EGGPDLRPILEH--------VEMLCMGFFTLEYLLRLASTPDLRRFARSALNLV 338
G GP + P+L VE C+ +FT E L+R + P F+R+ +N++
Sbjct: 301 SGVMAPPSGPTVAPLLPRTLADPFFIVETTCVIWFTFELLVRFFACPSKAGFSRNIMNII 360
Query: 339 DLVAILPLYLQLLLECFT-----GEGHQRGQTVGSVGKVGQVLRVMRLMRIFRILKLARH 393
D+VAI P ++ L E G G Q GQ S+ +LRV+RL+R+FRI KL+RH
Sbjct: 361 DVVAIFPYFITLGTELAEQQPGGGGGGQNGQQAMSLA----ILRVIRLVRVFRIFKLSRH 416
Query: 394 STGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSWWWAAV 453
S GL+ G TL+ +++G L+ F+ +G+ FS+AVY E D T+F++IP ++WWA V
Sbjct: 417 SKGLQILGKTLQASMRELGLLIFFLFIGVILFSSAVYFAEADNQGTHFSSIPDAFWWAVV 476
Query: 454 SISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTTIRR 513
+++TVGYGDM P T G+ LC G++ +P+ ++ + F+ +Y + +E + +
Sbjct: 477 TMTTVGYGDMRPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDHEEPAVLK 536
Query: 514 E 514
E
Sbjct: 537 E 537
>gi|119395748 potassium voltage-gated channel subfamily A member 1
[Homo sapiens]
Length = 495
Score = 194 bits (493), Expect = 2e-49
Identities = 125/414 (30%), Positives = 209/414 (50%), Gaps = 49/414 (11%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+N+ G ++ LA FP T LG R R ++ +EYFFDR+ F
Sbjct: 41 INISGLRFETQLKTLAQFPNTLLGN---PKKRMRY------FDPLRNEYFFDRNRPSFDA 91
Query: 161 VYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHEL 220
+ +Y SG L P E I F E +E E+ +
Sbjct: 92 ILYYYQSGGRLRRPVNVPLDMFSE---------------EIKFYELGEEAMEKFR----- 131
Query: 221 RAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVALALN 280
+ ++E E + + +R++W L E P SS A+ I + S +L+S+V L
Sbjct: 132 EDEGFIKEEERPLPEKEY----QRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLE 187
Query: 281 TVEEMQQH---SGQGEGGPDLRPILEH---------VEMLCMGFFTLEYLLRLASTPDLR 328
T+ E++ +G + I VE LC+ +F+ E ++R + P
Sbjct: 188 TLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKT 247
Query: 329 RFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRVMRLMRIFRIL 388
F ++ +N +D+VAI+P ++ L E EG+Q+G+ S+ +LRV+RL+R+FRI
Sbjct: 248 DFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQKGEQATSLA----ILRVIRLVRVFRIF 303
Query: 389 KLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPSTNFTTIPHSW 448
KL+RHS GL+ G TL+ +++G L+ F+ +G+ FS+AVY E + ++F++IP ++
Sbjct: 304 KLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAF 363
Query: 449 WWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSDYYSK 502
WWA VS++TVGYGDMYP T G+ LC G++ +P+ ++ + F+ +Y +
Sbjct: 364 WWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 417
>gi|25952092 potassium voltage-gated channel, shaker-related
subfamily, member 7 [Homo sapiens]
Length = 456
Score = 193 bits (490), Expect = 4e-49
Identities = 147/436 (33%), Positives = 208/436 (47%), Gaps = 65/436 (14%)
Query: 92 PPALLSTLNVNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFF 151
P L +NV G ++ L FP T LG A R R Y++ EYFF
Sbjct: 8 PCGCCERLVLNVAGLRFETRARTLGRFPDTLLGDPAR---RGRF------YDDARREYFF 58
Query: 152 DRDPAVFQLVYNFYLSGVLLVLDGLCPRR-FLEELGYWGVRLKYTPRCCRICFEERRDEL 210
DR F V +Y SG L P FLEE+ ++G+ R R DE
Sbjct: 59 DRHRPSFDAVLYYYQSGGRLRRPAHVPLDVFLEEVAFYGLGAAALARL-------REDE- 110
Query: 211 SERLKIQHELRAQAQVEEAEELFRDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSTFV 270
V L R R + R+LW L E P SS AA+ + V S +
Sbjct: 111 ------------GCPVPPERPLPR--RAFA---RQLWLLFEFPESSQAARVLAVVSVLVI 153
Query: 271 LVSVVALALNTVEEMQQH---------------------SGQGEGGPDLRPILEH---VE 306
LVS+V L T+ + + S Q G P P + VE
Sbjct: 154 LVSIVVFCLETLPDFRDDRDGTGLAAAAAAGPFPAPLNGSSQMPGNPPRLPFNDPFFVVE 213
Query: 307 MLCMGFFTLEYLLRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTV 366
LC+ +F+ E L+RL P F ++ +NL+D VAILP ++ L E QRG V
Sbjct: 214 TLCICWFSFELLVRLLVCPSKAIFFKNVMNLIDFVAILPYFVALGTEL----ARQRG--V 267
Query: 367 GSVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFS 426
G +LRV+RL+R+FRI KL+RHS GL+ G TLR +++G L+ F+ +G+ FS
Sbjct: 268 GQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVVLFS 327
Query: 427 AAVYSVEHDVPSTNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNG 486
+AVY E D ++FT+IP S+WWA V+++TVGYGDM P T G+ LC G++
Sbjct: 328 SAVYFAEVDRVDSHFTSIPESFWWAVVTMTTVGYGDMAPVTVGGKIVGSLCAIAGVLTIS 387
Query: 487 MPISILYNKFSDYYSK 502
+P+ ++ + FS +Y +
Sbjct: 388 LPVPVIVSNFSYFYHR 403
>gi|88758565 potassium voltage-gated channel, shaker-related
subfamily, member 3 [Homo sapiens]
Length = 575
Score = 191 bits (486), Expect = 1e-48
Identities = 128/424 (30%), Positives = 207/424 (48%), Gaps = 64/424 (15%)
Query: 101 VNVGGHSYQLDYCELAGFPKTRLGRLATSTSRSRQLSLCDDYEEQTDEYFFDRDPAVFQL 160
+N+ G ++ L FP+T LG R++ D +EYFFDR+ F
Sbjct: 108 INISGLRFETQLKTLCQFPETLLG------DPKRRMRYFDPLR---NEYFFDRNRPSFDA 158
Query: 161 VYNFYLSGVLLVLDGLCPRRFLEELGYWGVRLKYTPRCCRICFEERRDELSERLKIQHEL 220
+ +Y SG + P E I F + +E E+ +
Sbjct: 159 ILYYYQSGGRIRRPVNVPIDIFSE---------------EIRFYQLGEEAMEKFR----- 198
Query: 221 RAQAQVEEAEELFRDMRFYGPQR---RRLWNLMEKPFSSVAAKAIGVASSTFVLVSVVAL 277
E E R+ P+R R++W L E P SS A+ I + S +L+S+V
Sbjct: 199 -------EDEGFLREEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIF 251
Query: 278 ALNTVEEMQQH-------------------SGQGEGGPDLRPILEHVEMLCMGFFTLEYL 318
L T+ E + SG G VE LC+ +F+ E L
Sbjct: 252 CLETLPEFRDEKDYPASTSQDSFEAAGNSTSGSRAGASSFSDPFFVVETLCIIWFSFELL 311
Query: 319 LRLASTPDLRRFARSALNLVDLVAILPLYLQLLLECFTGEGHQRGQTVGSVGKVGQVLRV 378
+R + P F+R+ +NL+D+VAI+P ++ L E +G+ GQ S+ +LRV
Sbjct: 312 VRFFACPSKATFSRNIMNLIDIVAIIPYFITLGTELAERQGN--GQQAMSLA----ILRV 365
Query: 379 MRLMRIFRILKLARHSTGLRAFGFTLRQCYQQVGCLLLFIAMGIFTFSAAVYSVEHDVPS 438
+RL+R+FRI KL+RHS GL+ G TL+ +++G L+ F+ +G+ FS+AVY E D P+
Sbjct: 366 IRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADDPT 425
Query: 439 TNFTTIPHSWWWAAVSISTVGYGDMYPETHLGRFFAFLCIAFGIILNGMPISILYNKFSD 498
+ F++IP ++WWA V+++TVGYGDM+P T G+ LC G++ +P+ ++ + F+
Sbjct: 426 SGFSSIPDAFWWAVVTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 485
Query: 499 YYSK 502
+Y +
Sbjct: 486 FYHR 489
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,094,862
Number of Sequences: 37866
Number of extensions: 949519
Number of successful extensions: 5957
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 5230
Number of HSP's gapped (non-prelim): 510
length of query: 545
length of database: 18,247,518
effective HSP length: 107
effective length of query: 438
effective length of database: 14,195,856
effective search space: 6217784928
effective search space used: 6217784928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.