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Search of human proteins with 194097448
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194097448 RELT-like 2 [Homo sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194097448 RELT-like 2 [Homo sapiens] 627 e-180
gi|194097446 RELT-like 2 [Homo sapiens] 627 e-180
gi|146094508 receptor expressed in lymphoid tissues like 1 [Homo... 106 2e-23
gi|146094506 receptor expressed in lymphoid tissues like 1 [Homo... 106 2e-23
gi|23238200 RELT tumor necrosis factor receptor precursor [Homo ... 84 2e-16
gi|21361873 RELT tumor necrosis factor receptor precursor [Homo ... 84 2e-16
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 44 1e-04
gi|148727370 immediate early response 5-like [Homo sapiens] 43 3e-04
gi|58331179 KIAA1688 protein [Homo sapiens] 41 0.001
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 40 0.002
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 40 0.002
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 40 0.003
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 40 0.003
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 40 0.003
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 40 0.003
gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens] 39 0.004
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 39 0.007
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 38 0.010
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 38 0.010
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 38 0.013
gi|61835232 growth differentiation factor 7 preproprotein [Homo ... 38 0.013
gi|48762934 alpha 2 type I collagen [Homo sapiens] 37 0.017
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 37 0.017
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 37 0.022
gi|4557743 Mediterranean fever protein [Homo sapiens] 37 0.022
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.022
gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo ... 37 0.022
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi... 37 0.022
gi|157785645 SPEG complex locus [Homo sapiens] 37 0.022
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 37 0.022
>gi|194097448 RELT-like 2 [Homo sapiens]
Length = 303
Score = 627 bits (1616), Expect = e-180
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQ 60
MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQ
Sbjct: 1 MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQ 60
Query: 61 PPEDDDMNEDTVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSH 120
PPEDDDMNEDTVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSH
Sbjct: 61 PPEDDDMNEDTVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSH 120
Query: 121 HHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGL 180
HHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGL
Sbjct: 121 HHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGL 180
Query: 181 HEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG 240
HEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG
Sbjct: 181 HEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG 240
Query: 241 GLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGA 300
GLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGA
Sbjct: 241 GLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGA 300
Query: 301 GSM 303
GSM
Sbjct: 301 GSM 303
>gi|194097446 RELT-like 2 [Homo sapiens]
Length = 303
Score = 627 bits (1616), Expect = e-180
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQ 60
MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQ
Sbjct: 1 MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQ 60
Query: 61 PPEDDDMNEDTVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSH 120
PPEDDDMNEDTVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSH
Sbjct: 61 PPEDDDMNEDTVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSH 120
Query: 121 HHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGL 180
HHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGL
Sbjct: 121 HHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKRYGL 180
Query: 181 HEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG 240
HEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG
Sbjct: 181 HEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNG 240
Query: 241 GLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGA 300
GLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGA
Sbjct: 241 GLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGA 300
Query: 301 GSM 303
GSM
Sbjct: 301 GSM 303
>gi|146094508 receptor expressed in lymphoid tissues like 1 [Homo
sapiens]
Length = 271
Score = 106 bits (265), Expect = 2e-23
Identities = 75/190 (39%), Positives = 101/190 (53%), Gaps = 19/190 (10%)
Query: 13 HGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQPPEDDDM---NE 69
H Y+ + LV VFF+MGL G +ICH+LKKKGYRC T + ++ +++ E +D N
Sbjct: 55 HPEYIAYALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENS 114
Query: 70 DTVERIVRCIIQNEANAEALKEMLGDS---EGEGTVQLSS-----VDATSSLQDGAPSHH 121
DTV +IV I++NEANA+ LK M+ D+ + E V S+ V G P H
Sbjct: 115 DTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKH 174
Query: 122 ------HTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRP-RTGETTVFSVGRFRVTHI 174
HTV H R KR ++ +K +SRP R GE TV SVGRFRVT +
Sbjct: 175 VCGHHLHTVGGVVERDVCHRCRHKRWHFIKP-TNKSRESRPRRQGEVTVLSVGRFRVTKV 233
Query: 175 EKRYGLHEHR 184
E + E R
Sbjct: 234 EHKSNQKERR 243
>gi|146094506 receptor expressed in lymphoid tissues like 1 [Homo
sapiens]
Length = 271
Score = 106 bits (265), Expect = 2e-23
Identities = 75/190 (39%), Positives = 101/190 (53%), Gaps = 19/190 (10%)
Query: 13 HGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQPPEDDDM---NE 69
H Y+ + LV VFF+MGL G +ICH+LKKKGYRC T + ++ +++ E +D N
Sbjct: 55 HPEYIAYALVPVFFIMGLFGVLICHLLKKKGYRCTTEAEQDIEEEKVEKIELNDSVNENS 114
Query: 70 DTVERIVRCIIQNEANAEALKEMLGDS---EGEGTVQLSS-----VDATSSLQDGAPSHH 121
DTV +IV I++NEANA+ LK M+ D+ + E V S+ V G P H
Sbjct: 115 DTVGQIVHYIMKNEANADVLKAMVADNSLYDPESPVTPSTPGSPPVSPGPLSPGGTPGKH 174
Query: 122 ------HTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRP-RTGETTVFSVGRFRVTHI 174
HTV H R KR ++ +K +SRP R GE TV SVGRFRVT +
Sbjct: 175 VCGHHLHTVGGVVERDVCHRCRHKRWHFIKP-TNKSRESRPRRQGEVTVLSVGRFRVTKV 233
Query: 175 EKRYGLHEHR 184
E + E R
Sbjct: 234 EHKSNQKERR 243
>gi|23238200 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 84.0 bits (206), Expect = 2e-16
Identities = 76/255 (29%), Positives = 110/255 (43%), Gaps = 46/255 (18%)
Query: 16 YMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSR----GSEPDDAQLQPP-EDDDMNED 70
Y + +V VF LMGL+G ++C++LK+KGY C + G + + P +D NED
Sbjct: 163 YAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGINPAYRTEDANED 222
Query: 71 TVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPS------HHHTV 124
T+ +VR I + + NA AL+E+L + + VQ +S S L P+ H H +
Sbjct: 223 TIGVLVRLITEKKENAAALEELLKEYHSKQLVQ-TSHRPVSKLPPAPPNVPHICPHRHHL 281
Query: 125 HLG------SAAPCLHCSRSKRPPLVRQGRS------------------KEGKSRPRTGE 160
H S C CS+ K P ++ + K G R GE
Sbjct: 282 HTVQGLASLSGPCCSRCSQKKWPEVLLSPEAVAATTPVPSLLPNPTRVPKAGAKAGRQGE 341
Query: 161 TTVFSVGRFRVTHI-EKRYG--LHEHRDGSPTDRSWGS-------GGGQDPGGGQGSGGG 210
T+ SVGRFRV I E+R + E + + SWG G + GSGG
Sbjct: 342 ITILSVGRFRVARIPEQRTSSMVSEVKTITEAGPSWGDLPDSPQPGLPPEQQALLGSGGS 401
Query: 211 QPKAGMPAMERLPPE 225
+ K P E E
Sbjct: 402 RTKWLKPPAENKAEE 416
>gi|21361873 RELT tumor necrosis factor receptor precursor [Homo
sapiens]
Length = 430
Score = 84.0 bits (206), Expect = 2e-16
Identities = 76/255 (29%), Positives = 110/255 (43%), Gaps = 46/255 (18%)
Query: 16 YMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSR----GSEPDDAQLQPP-EDDDMNED 70
Y + +V VF LMGL+G ++C++LK+KGY C + G + + P +D NED
Sbjct: 163 YAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGINPAYRTEDANED 222
Query: 71 TVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPS------HHHTV 124
T+ +VR I + + NA AL+E+L + + VQ +S S L P+ H H +
Sbjct: 223 TIGVLVRLITEKKENAAALEELLKEYHSKQLVQ-TSHRPVSKLPPAPPNVPHICPHRHHL 281
Query: 125 HLG------SAAPCLHCSRSKRPPLVRQGRS------------------KEGKSRPRTGE 160
H S C CS+ K P ++ + K G R GE
Sbjct: 282 HTVQGLASLSGPCCSRCSQKKWPEVLLSPEAVAATTPVPSLLPNPTRVPKAGAKAGRQGE 341
Query: 161 TTVFSVGRFRVTHI-EKRYG--LHEHRDGSPTDRSWGS-------GGGQDPGGGQGSGGG 210
T+ SVGRFRV I E+R + E + + SWG G + GSGG
Sbjct: 342 ITILSVGRFRVARIPEQRTSSMVSEVKTITEAGPSWGDLPDSPQPGLPPEQQALLGSGGS 401
Query: 211 QPKAGMPAMERLPPE 225
+ K P E E
Sbjct: 402 RTKWLKPPAENKAEE 416
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/28 (71%), Positives = 20/28 (71%)
Query: 184 RDGSPTDRSWGSGGGQDPGGGQGSGGGQ 211
RDG T GSGGGQ PGGG GSGGGQ
Sbjct: 547 RDGQGTAGGHGSGGGQRPGGGHGSGGGQ 574
Score = 37.4 bits (85), Expect = 0.017
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 179 GLHEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAG 215
G H G GSGGGQ PG G GSGGG+ G
Sbjct: 554 GGHGSGGGQRPGGGHGSGGGQGPGDGHGSGGGKNSGG 590
Score = 35.0 bits (79), Expect = 0.082
Identities = 40/166 (24%), Positives = 55/166 (33%), Gaps = 37/166 (22%)
Query: 94 GDSEGEGTVQLSSVDATSSLQDGAPSHHHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGK 153
G+ G G Q S+ +SS H C + R G+ G
Sbjct: 496 GNGRGSGGGQGSNGQGSSS------------HSSGGNQCSGEGQGSRGGQGSNGQGSGGN 543
Query: 154 SRPRTGETTVFSVGRFRVTHIEKRYGLHEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPK 213
R G+ T G ++ G H G GSGGG++ GGG+GSG G+
Sbjct: 544 QCSRDGQGTAGGHGSGGG---QRPGGGHGSGGGQGPGDGHGSGGGKNSGGGKGSGSGKGS 600
Query: 214 AG------------------MPAMERLPPERPQPQVLASPPVQNGG 241
G +++PP P P PP GG
Sbjct: 601 DGDGERGKSLKKRSYFGKLTQSKQQQMPPPPPPP----PPPPPAGG 642
Score = 33.9 bits (76), Expect = 0.18
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 182 EHRDGSPTD----RSWGSGGGQDPGGGQGSGG 209
E ++GS D +WGSG G+ GGGQGS G
Sbjct: 478 EDQEGSGGDYMPMNNWGSGNGRGSGGGQGSNG 509
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 43.1 bits (100), Expect = 3e-04
Identities = 52/207 (25%), Positives = 76/207 (36%), Gaps = 29/207 (14%)
Query: 114 QDGAPSHHHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTH 173
Q P HH HL AAP + S + PL + G + ++R + + + H
Sbjct: 63 QQQQPPHHQHQHLAYAAPGMPASAADFGPL-QLGGGGDAEAREPAARHQLHQLHQLHQLH 121
Query: 174 IEKRYGLHEHRDGSPTDRSWGSGGGQDPGGG------QGSGGGQPKAGMP----AMERLP 223
++++ LH+H+ +P + + G GG G QP G P +E L
Sbjct: 122 LQQQ--LHQHQHPAPRGCAAAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQ 179
Query: 224 PERPQPQVLASPPVQNGGL--RD----------SSLTPRALEGNPRASAEPTLRAG---G 268
P P P L PP L RD P A +P AS P G G
Sbjct: 180 P-GPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPPASPAPASSPGFYRG 238
Query: 269 RGPSPGLPTQEANGQPSKPDTSDHQVS 295
P+P + Q + D H V+
Sbjct: 239 AYPTPSDFGLHCSSQTTVLDLDTHVVT 265
>gi|58331179 KIAA1688 protein [Homo sapiens]
Length = 1114
Score = 40.8 bits (94), Expect = 0.001
Identities = 47/176 (26%), Positives = 70/176 (39%), Gaps = 18/176 (10%)
Query: 112 SLQDGAPSHHHTVHLGSAAPCLHCSRSKRP----PLVRQGRSKEGKSRPRTGETTVFSVG 167
SLQ AP T+ P R++ P PL+ Q R G S+P + +
Sbjct: 253 SLQTFAPEADGTIFFPERRPSPFLKRAELPGSSSPLLAQPRKPSGDSQPSSPRYG-YEPP 311
Query: 168 RFRVTHIEKRYGLHEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERP 227
+ +E + ++ D P D + +GGG G Q S G +P+ + ++ PP
Sbjct: 312 LYEEPPVEYQAPIY---DEPPMDVQFEAGGGYQAGSPQRSPGRKPRPFLQPNKQGPPSPC 368
Query: 228 QPQVLASPPVQNGGLRDSSLTP------RALEGNPRASAEPTLRAGGR---GPSPG 274
Q VL L +P R L +A + P LRAG R P+PG
Sbjct: 369 QQLVLTKQKCPERFL-SLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAPNPG 423
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 176 KRYGLHEHRDGSPTD---RSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVL 232
+R G R GS R WG G G+ P GG+ G + G A P P++
Sbjct: 441 QRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELP 500
Query: 233 ASPPVQNGGLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDT 289
A P R P A+A+ T G G PG P G +PD+
Sbjct: 501 AVDPA------------RDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDS 545
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 176 KRYGLHEHRDGSPTD---RSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVL 232
+R G R GS R WG G G+ P GG+ G + G A P P++
Sbjct: 441 QRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELP 500
Query: 233 ASPPVQNGGLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDT 289
A P R P A+A+ T G G PG P G +PD+
Sbjct: 501 AVDPA------------RDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDS 545
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 40.0 bits (92), Expect = 0.003
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 195 SGGGQDPGGGQGSGGGQPKAGMPAMERLPPERP----QPQVLASPPVQNGGLRDSSLTPR 250
SG G+ P G G P+ P R+PP RP +P + PPV + TPR
Sbjct: 145 SGPGRFPVPSPGHRSGPPE---PQRNRMPPPRPDVGSKPDSIP-PPVPS--------TPR 192
Query: 251 ALEGNPRASAEPTLRAGGRGPSPG 274
++ +P P + G R PSPG
Sbjct: 193 PIQSSPHNRGSPPVPGGPRQPSPG 216
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 193 WGSGGGQDPGGGQGSGGGQPKAGMPAMERL-PPERPQPQVLASPPVQNGGLRDSSLTPRA 251
+G GGG GGG G GG G P + L P+ + A+ +GG R L P
Sbjct: 74 FGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPP-- 131
Query: 252 LEGNPRASAEPTLRAGGRG----PSP----GLPTQEANGQ-PSKPDTSDHQVSLP 297
G SA+P G G PSP G P + N P +PD S+P
Sbjct: 132 --GGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIP 184
Score = 31.2 bits (69), Expect = 1.2
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 223 PPERPQPQVLASPPVQNGGL-------RDSSLTPRALEGNPRASAEPTLRAGGRGPSPGL 275
P ERP P V PP ++G L R+ S T RAL P+ + + + GP P L
Sbjct: 361 PSERPPPPV-RDPPGRSGPLPPPPPVSRNGS-TSRALPATPQLPSRSGVDSPRSGPRPPL 418
Query: 276 PTQEAN-GQPSKPDTS 290
P + G P P S
Sbjct: 419 PPDRPSAGAPPPPPPS 434
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 40.0 bits (92), Expect = 0.003
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 195 SGGGQDPGGGQGSGGGQPKAGMPAMERLPPERP----QPQVLASPPVQNGGLRDSSLTPR 250
SG G+ P G G P+ P R+PP RP +P + PPV + TPR
Sbjct: 145 SGPGRFPVPSPGHRSGPPE---PQRNRMPPPRPDVGSKPDSIP-PPVPS--------TPR 192
Query: 251 ALEGNPRASAEPTLRAGGRGPSPG 274
++ +P P + G R PSPG
Sbjct: 193 PIQSSPHNRGSPPVPGGPRQPSPG 216
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 14/115 (12%)
Query: 193 WGSGGGQDPGGGQGSGGGQPKAGMPAMERL-PPERPQPQVLASPPVQNGGLRDSSLTPRA 251
+G GGG GGG G GG G P + L P+ + A+ +GG R L P
Sbjct: 74 FGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPPLLPP-- 131
Query: 252 LEGNPRASAEPTLRAGGRG----PSP----GLPTQEANGQ-PSKPDTSDHQVSLP 297
G SA+P G G PSP G P + N P +PD S+P
Sbjct: 132 --GGRSTSAKPFSPPSGPGRFPVPSPGHRSGPPEPQRNRMPPPRPDVGSKPDSIP 184
Score = 31.2 bits (69), Expect = 1.2
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 223 PPERPQPQVLASPPVQNGGL-------RDSSLTPRALEGNPRASAEPTLRAGGRGPSPGL 275
P ERP P V PP ++G L R+ S T RAL P+ + + + GP P L
Sbjct: 361 PSERPPPPV-RDPPGRSGPLPPPPPVSRNGS-TSRALPATPQLPSRSGVDSPRSGPRPPL 418
Query: 276 PTQEAN-GQPSKPDTS 290
P + G P P S
Sbjct: 419 PPDRPSAGAPPPPPPS 434
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 201 PGGGQGS----GGGQPKAGMPAMERLPPERPQPQVLASP--PVQNGGLRDSSLTPRALEG 254
PG G GS G QP+ GMP + +P ER Q Q ++ P P+ G + L PR L G
Sbjct: 273 PGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQ-MSDPRAPIPRGPVTPGGLPPRGLLG 331
Query: 255 ----NPRASA--EPTLRAGGRG----PSPGLPTQEANGQPSKPDTSDHQVSLPQG 299
+PR T RG P G P A+G ++ +S P G
Sbjct: 332 DAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLG 386
Score = 32.0 bits (71), Expect = 0.69
Identities = 29/102 (28%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
Query: 202 GGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQN----------GGLRDSSLTPRA 251
G G G G G + + P PQPQ LA PV++ GG+ P A
Sbjct: 212 GPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAPGPIPAA 271
Query: 252 LEG------NPRASAEPTLRAGGRGPSPGLPTQEANGQPSKP 287
+ G P + +P L G GP P Q P P
Sbjct: 272 VPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAP 313
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 201 PGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRASA 260
P G + G P P P P P V +GGLR +L P PR
Sbjct: 770 PEGASSAAPGSPVPAPPTKASALPVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRHPP 829
Query: 261 EP-----TLRAGGRGPSPG-LPTQEANGQ-----PSKPDTSDHQVSLP 297
+P T R G PG P E + Q P +P +D ++ LP
Sbjct: 830 KPPRSKATERPGQEPEGPGATPAGERDDQSPDSVPERPRPADRRLCLP 877
>gi|55769533 PRKC, apoptosis, WT1, regulator [Homo sapiens]
Length = 340
Score = 39.3 bits (90), Expect = 0.004
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 197 GGQDPGGGQGSGGGQPKAGM---PAM-------ERLPPERPQPQVLASPPVQNGGLRDSS 246
G PGGG G+P AG PA LP P + P N + +
Sbjct: 38 GPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAM 97
Query: 247 LTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTS 290
LT RA G R+ EP + P P +E +G P K +S
Sbjct: 98 LT-RAAPGPRRSEDEPPAASASAAPPPQRDEEEPDGVPEKGKSS 140
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 38.5 bits (88), Expect = 0.007
Identities = 46/169 (27%), Positives = 63/169 (37%), Gaps = 30/169 (17%)
Query: 118 PSHHHTVHLGSAAPCLHCSRSKRPPLVRQGRSKEGKSRPRTGETTVFSVGRFRVTHIEKR 177
P HHH H P H + PP + G S + PR S+ + R
Sbjct: 1000 PPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPP-PRLALGPQPSLRGW-------R 1051
Query: 178 YGLHEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAME--RLPPERPQPQVLASP 235
G G+P+ GS GG GGG G PA+ +LPP R + P
Sbjct: 1052 GGGPSPTPGAPSPSHHGSAGG---GGGSSQG--------PALRYFQLPP-RAASAAMYVP 1099
Query: 236 PVQNGGLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQP 284
G + + +EG P+ + GG P+P PT A+ QP
Sbjct: 1100 ARSGRGRKGPLVKQTKVEGEPQ-------KGGGLPPAPS-PTSPASPQP 1140
Score = 28.5 bits (62), Expect = 7.7
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 200 DPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPR 257
+P GG G GGG + PAM +PP P P + P L +S AL G R
Sbjct: 1186 EPTGG-GGGGGSSPSPAPAMSPVPPS-PSPVPTPASPSGPATLDFTSQFGAALVGAAR 1241
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 38.1 bits (87), Expect = 0.010
Identities = 34/110 (30%), Positives = 39/110 (35%), Gaps = 14/110 (12%)
Query: 196 GGGQDPGGGQGS-------GGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLT 248
GG PG Q G G P AG P PP RP P + P G +
Sbjct: 299 GGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMG------MP 352
Query: 249 PRALE-GNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLP 297
PR G+P P G RGP P +P G P P + LP
Sbjct: 353 PRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLP 402
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 208 GGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRASAEPTLRAG 267
G G P GMP PP P P L PP + + P A P ++ P
Sbjct: 229 GSGLPPPGMPPPGSFPPPVPPPGAL--PPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHP 286
Query: 268 GRGPS 272
G G S
Sbjct: 287 GHGHS 291
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 38.1 bits (87), Expect = 0.010
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 188 PTDRSWGSGGGQDPGGGQGSGGGQPKAGMPA--------MERLPPERP---QPQVLASPP 236
P D + GSGG DPG +G GGG A + +P E P + + PP
Sbjct: 47 PVDPAGGSGGSADPGWVRGVGGGGSARAQAAGSSREVRSVAPVPLEEPVEGRSESRLRPP 106
Query: 237 VQNGGLRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTS 290
+ G D L + L PR S +G SPG P P +P S
Sbjct: 107 PPSEGEEDEELESQEL---PRGS------SGAAALSPGAPASWQPPPPPQPPPS 151
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 37.7 bits (86), Expect = 0.013
Identities = 33/113 (29%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 192 SWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLT--P 249
SW S G + P G P A +P M R PP QP P +QN + SS P
Sbjct: 1544 SWPSHGTRQPPYG-------PSAPVPPMTRPPPSNYQP----PPSMQNHIPQVSSPAPLP 1592
Query: 250 RALEGNPRASAEPTLRAGGR--GPSPGLPTQEANGQPSKPDTSDHQVSLPQGA 300
R +E S P L +G + P +P P +P ++ P G+
Sbjct: 1593 RPMENRTSPSKSPFLHSGMKMQKAGPPVPASHIAPAPVQPPMIRRDITFPPGS 1645
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 215 GMPAMERLPPERPQP---QVLASPPVQNGGLRDSSLTPRALEGNPRASAEPTLRAGGRGP 271
G P ++LPP +PQP Q A P Q P + T R GP
Sbjct: 1398 GQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYG------NAYPATATAATERRPAGGP 1451
Query: 272 SPGLPTQEANGQPSKPDTSDHQVSLP 297
P Q + S P ++ Q ++P
Sbjct: 1452 QNQFPFQFGRDRVSAPPGTNAQQNMP 1477
Score = 30.0 bits (66), Expect = 2.6
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 204 GQGSGGGQPKAGMPA----MERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRAS 259
G GGGQP A P M+++ RPQP +P Q G G P S
Sbjct: 365 GSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGS 424
Query: 260 AEP 262
P
Sbjct: 425 QTP 427
>gi|61835232 growth differentiation factor 7 preproprotein [Homo
sapiens]
Length = 450
Score = 37.7 bits (86), Expect = 0.013
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 191 RSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTP- 249
R+ G+G + PGGG G GGG A P P+ A+ G R+ S+ P
Sbjct: 30 RAAGAGPVRSPGGGGGGGGGGRTLAQAAGAAAVPAAAVPRARAARRAAGSGFRNGSVVPH 89
Query: 250 -------RALEGNPRASAEPTLRAG-GRGPSPGLPTQEANGQPSKPDT 289
R+L G A A +G GR + T +A S +T
Sbjct: 90 HFMMSLYRSLAGRAPAGAAAVSASGHGRADTITGFTDQATQDESAAET 137
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 37.4 bits (85), Expect = 0.017
Identities = 40/114 (35%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 179 GLHEHRDGSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLP-PERPQPQVLASPPV 237
GL R D + G+ G P G QG G Q G P + LP P P +V P
Sbjct: 514 GLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEV--GKPG 571
Query: 238 QNGGLRDSSLT----PRALEGNPRAS--AEPTLRAGGRGPSPGLPTQEAN-GQP 284
+ G + L PR G P S A PT G RGPS G P + N G+P
Sbjct: 572 ERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPS-GPPGPDGNKGEP 624
Score = 30.8 bits (68), Expect = 1.5
Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 194 GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPER-----PQPQVLASPPVQNGGLRDSSLT 248
G+ G P G G G + G P M P P P ++ PP G L
Sbjct: 760 GAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR 819
Query: 249 -PRALEGNPRASAE-----PTLRAGGRGPSPGLPTQEANGQP 284
PR +G + E P AG +GPS T G P
Sbjct: 820 GPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTP 861
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 37.4 bits (85), Expect = 0.017
Identities = 35/100 (35%), Positives = 37/100 (37%), Gaps = 11/100 (11%)
Query: 183 HRDGSPTDRSWGSGGGQDPGGGQG-------SGGGQPKAGMPAMERLPPER-PQPQVLAS 234
H G S GSGGG GGG SGG G P+ R P R PQP V
Sbjct: 2290 HSGGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQP-VRHH 2348
Query: 235 PPVQNGGLRDSSLTPRALEG--NPRASAEPTLRAGGRGPS 272
PPV S + G P S P A GPS
Sbjct: 2349 PPVLVSSAASSQAEADKMSGTSTPGPSLPPPGAAPEAGPS 2388
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 37.0 bits (84), Expect = 0.022
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 194 GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALE 253
G G + P G P G+ + PP P+P P+ L +L R
Sbjct: 792 GPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPREPL---ALAGRTAP 848
Query: 254 GNPR-ASAEPTLRAGGRGPSPGLPTQEANGQP 284
PR ASA PT R SP P+Q A QP
Sbjct: 849 AQPRAASAPPTDR------SPQSPSQGARRQP 874
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 37.0 bits (84), Expect = 0.022
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 16/151 (10%)
Query: 152 GKSRPRTGETTVFSVGRFRVTHIEKRYGLHEHRDGSPTDRSWGSGGGQDPGGGQGS---- 207
GK RPR+ E T+ S G + E L E + + D + P GG +
Sbjct: 236 GKMRPRSLEVTI-STGEKAPANPEILLTLEE-KTAANLDSATEPRARPTPDGGASADLKE 293
Query: 208 GGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPRASAEPTLRAG 267
G G P+ + P+ PV +RDS P A+ G+P+AS G
Sbjct: 294 GPGNPEHSVTGRPPDTAASPRCHAQEGDPVDGTCVRDSCSFPEAVSGHPQAS-------G 346
Query: 268 GRGPSPGLPTQEANGQPSKPDTSDHQVSLPQ 298
R SPG P + + + P + Q LPQ
Sbjct: 347 SR--SPGCPRCQDSHERKSPGSLSPQ-PLPQ 374
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.0 bits (84), Expect = 0.022
Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 194 GSGGGQDPGGGQGSGG--------GQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDS 245
G G PGG +G G G P G P E P P P+ A P GG D+
Sbjct: 618 GPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDA 677
Query: 246 SLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKP 287
G P + P LR GG GP + A G P P
Sbjct: 678 GAPGE--RGPPGLAGAPGLR-GGAGPPGPEGGKGAAGPPGPP 716
Score = 32.7 bits (73), Expect = 0.41
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 184 RDGSPTDRSW----GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQN 239
RDG P GS GG G G G Q ++G P R QP V+ P
Sbjct: 526 RDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFP---- 581
Query: 240 GGLRDSSLTPRALEGNPRASAEPTLRAGGRGPSP-GLPTQEANGQPSKP 287
P+ +G P + E R G GP P G P + P P
Sbjct: 582 --------GPKGNDGAPGKNGE---RGGPGGPGPQGPPGKNGETGPQGP 619
Score = 31.6 bits (70), Expect = 0.91
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 194 GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALE 253
G G P G G G + ++G P L ER P P GL ++ P +
Sbjct: 960 GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLP-----GLAGTAGEP-GRD 1013
Query: 254 GNPRASAEPTLRAGGRGPSP-GLPTQEANGQPSKPDTSDH 292
GNP + P GR SP G + NG P P H
Sbjct: 1014 GNPGSDGLP-----GRDGSPGGKGDRGENGSPGAPGAPGH 1048
Score = 29.6 bits (65), Expect = 3.4
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 194 GSGGGQDPGGGQGSGG--GQP----KAGMPAMERLPPER-----PQPQVLASPPVQNGG- 241
G GG P G +G G G P AG P ++ +P ER P P+ P G
Sbjct: 693 GLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD 752
Query: 242 ---LRDSSLTPRALEGNPRASAEPTLRAGGRGPSPGLP 276
+D P G P + +P + G G +PGLP
Sbjct: 753 GVPGKDGPRGPTGPIGPPGPAGQPGDK--GEGGAPGLP 788
Score = 29.3 bits (64), Expect = 4.5
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 19/117 (16%)
Query: 186 GSPTDRSWGSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDS 245
G+P G G+ G+ GG P P P P PQ G++
Sbjct: 813 GAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQ----------GVKGE 862
Query: 246 SLTPRALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGAGS 302
+P G P A+ P G RG PG P N P P S + P AG+
Sbjct: 863 RGSP----GGPGAAGFP----GARG-LPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN 910
Score = 28.9 bits (63), Expect = 5.9
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 24/101 (23%)
Query: 194 GSGGGQDPG-----GGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLT 248
GSG PG G +GS GG AG P LP PP NG +
Sbjct: 847 GSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLP----------GPPGSNG-----NPG 891
Query: 249 PRALEGNPRASAEPTLRAGGRGP--SPGLPTQEAN-GQPSK 286
P G+P P AG G SPG+ + + GQP +
Sbjct: 892 PPGPSGSPGKDGPPG-PAGNTGAPGSPGVSGPKGDAGQPGE 931
>gi|239748995 PREDICTED: hypothetical protein XP_002346877 [Homo
sapiens]
Length = 326
Score = 37.0 bits (84), Expect = 0.022
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 195 SGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTP----- 249
S GG G + S G + AG R P + P A+ ++ L S+L P
Sbjct: 144 SHGGDGRGVARASLGDKAGAGRAGRGR-PAQSPAEADAAARASKSLKLLSSALPPHLRPA 202
Query: 250 ---RALEGNPRASAEPTLRAGGRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGAGSM 303
RA+ G + P LR G GP PG P +PD + ++ P AG++
Sbjct: 203 AKTRAVAGPTAKESPPALRTVGDGPRPG---------PKRPDPAPSRLPPPPHAGAL 250
>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapiens]
Length = 1435
Score = 37.0 bits (84), Expect = 0.022
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 209 GGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTP-RALEGNPRASAEPTLRAG 267
G K +P+ E PE P P LA+P V G + +T L + + SA LR G
Sbjct: 1305 GKYVKVSIPSSEGASPEPPPPDALAAPYVLYPGFQPVPVTALMPLRCSSQLSAPTFLRQG 1364
Query: 268 GRGPSPGLPTQEANGQPSKPDTSDHQVSLPQGAG 301
R + TQ + + D H P AG
Sbjct: 1365 PRASAARARTQSVHESGLQLDPGPHGDCTPHSAG 1398
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 37.0 bits (84), Expect = 0.022
Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 140 RPPLVRQGRSK-----EGKSRPRTG--------ETTVFSVGRFRVTHIEKRYGLHEHRDG 186
+PPL +G K +G++ PR E V +G R+ L E +
Sbjct: 2117 QPPLENRGLQKSSSFSQGEAEPRGRHRRAGAPLEIPVARLGARRLQESPSLSALSEAQPS 2176
Query: 187 SPTDRSW---GSGGGQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLR 243
SP S + +P S QP A PA ++ P RP+P V AS P
Sbjct: 2177 SPARPSAPKPSTPKSAEPSATTPSDAPQPPAPQPAQDKAPEPRPEP-VRASKPAP----P 2231
Query: 244 DSSLTPRALEGNPRASAEPTLRAGG--RGPSPGLPTQEANGQP 284
+L AL P A +L+ G +GPS G + +P
Sbjct: 2232 PQALQTLALPLTPYAQIIQSLQLSGHAQGPSQGPAAPPSEPKP 2274
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 37.0 bits (84), Expect = 0.022
Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 198 GQDPGGGQGSGGGQPKAGMPAMERLPPERPQPQVLASPPVQNGGLRDSSLTPRALEGNPR 257
G PG G G G+P PP P P + + G L DS N
Sbjct: 1063 GAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSI-----IPFGSLADSISINLPAPPNLH 1117
Query: 258 ASAEPTLRAGGRGPSPGLPTQEANG-QPSKPDTSDHQVSLPQGAG 301
A G P P LP AN P+ P T+ SLP G G
Sbjct: 1118 GHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPG 1162
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,891,745
Number of Sequences: 37866
Number of extensions: 969730
Number of successful extensions: 8470
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 6234
Number of HSP's gapped (non-prelim): 2207
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.