Guide to the Human Genome
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Name: LOC100131897 Sequence: fasta or formatted (535aa) NCBI GI: 193788653
Description:

hypothetical protein LOC100131897

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         34           2
 C cysteine            2.1         11           1
 D aspartate           4.7         25           2
 E glutamate           7.3         39           2
 F phenylalanine       2.2         12           1
 G glycine             4.1         22           2
 H histidine           3.4         18           2
 I isoleucine          3.0         16           2
 K lysine              6.4         34           3
 L leucine             8.6         46           3
 M methionine          0.7          4           1
 N asparagine          4.9         26           2
 P proline             8.0         43           3
 Q glutamine           6.2         33           2
 R arginine            6.4         34           2
 S serine             12.7         68           3
 T threonine           5.6         30           2
 V valine              5.6         30           1
 W tryptophan          0.7          4           2
 Y tyrosine            1.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC100131897 
C10orf141             0.090   hypothetical protein LOC642938 
SECISBP2              0.019   SECIS binding protein 2 
WNK4                  0.018   WNK lysine deficient protein kinase 4 
DSPP                  0.017   dentin sialophosphoprotein preproprotein 
RUNX2                 0.016   runt-related transcription factor 2 isoform b [Homo...
RUNX2                 0.016   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.016   runt-related transcription factor 2 isoform c 
PODXL                 0.016   podocalyxin-like isoform 2 precursor 
PODXL                 0.016   podocalyxin-like isoform 1 precursor 
COIL                  0.016   coilin 
CYTSB                 0.014   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.014   spectrin domain with coiled-coils 1 NSP5b3a 
BIN2                  0.012   bridging integrator 2 
TNS4                  0.012   tensin 4 
CYTSB                 0.012   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.012   spectrin domain with coiled-coils 1 NSP5a3a 
TNRC18                0.012   trinucleotide repeat containing 18 
FRMPD3                0.011   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.011   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.011   PREDICTED: FERM and PDZ domain containing 3 
DPCR1                 0.010   diffuse panbronchiolitis critical region 1 protein ...
EPS15                 0.010   epidermal growth factor receptor pathway substrate ...
EPS15                 0.010   epidermal growth factor receptor pathway substrate 15...
MTSS1L                0.010   metastasis suppressor 1-like 
TGOLN2                0.010   trans-golgi network protein 2 
SH2D3C                0.010   SH2 domain containing 3C isoform e 
SH2D3C                0.010   SH2 domain containing 3C isoform d 
SH2D3C                0.010   SH2 domain containing 3C isoform c 
SH2D3C                0.010   SH2 domain containing 3C isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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