Guide to the Human Genome
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Name: FRMPD3 Sequence: fasta or formatted (1810aa) NCBI GI: 89060961
Description:

PREDICTED: FERM and PDZ domain containing 3

Referenced in:

PDZ Domain

Other entries for this name:
alt prot [1662aa] PREDICTED: FERM and PDZ domain containing 3
alt mRNA [1810aa] PREDICTED: FERM and PDZ domain containing 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5        135           4
 C cysteine            1.7         31           2
 D aspartate           4.0         73           2
 E glutamate           7.4        134           7
 F phenylalanine       2.7         48           2
 G glycine             5.6        101           2
 H histidine           2.1         38           1
 I isoleucine          3.1         56           2
 K lysine              5.2         94           2
 L leucine            10.4        189           3
 M methionine          1.9         35           2
 N asparagine          2.3         42           1
 P proline             8.0        145           4
 Q glutamine           7.1        128          27
 R arginine            6.9        124           2
 S serine             11.1        201           4
 T threonine           5.2         94           2
 V valine              5.7        103           3
 W tryptophan          0.2          3           1
 Y tyrosine            2.0         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                1.000   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.868   PREDICTED: FERM and PDZ domain containing 3 
FRMPD4                0.137   FERM and PDZ domain containing 4 
FRMPD1                0.091   FERM and PDZ domain containing 1 
PTK2                  0.013   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.013   PTK2 protein tyrosine kinase 2 isoform a 
PTK2B                 0.012   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.012   PTK2B protein tyrosine kinase 2 beta isoform b [Homo...
PTK2B                 0.012   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.012   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
TBP                   0.011   TATA box binding protein 
THAP11                0.011   THAP domain containing 11 
FOXP2                 0.011   forkhead box P2 isoform I 
FOXP2                 0.011   forkhead box P2 isoform III 
FOXP2                 0.011   forkhead box P2 isoform II 
MED12                 0.010   mediator complex subunit 12 
MAML2                 0.010   mastermind-like 2 
NCOA3                 0.010   nuclear receptor coactivator 3 isoform b 
NCOA3                 0.010   nuclear receptor coactivator 3 isoform a 
MN1                   0.010   meningioma  1 
ATXN1                 0.010   ataxin 1 
ATXN1                 0.010   ataxin 1 
SRRM2                 0.010   splicing coactivator subunit SRm300 
RUNX2                 0.010   runt-related transcription factor 2 isoform b [Homo...
RUNX2                 0.010   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.010   runt-related transcription factor 2 isoform c 
POU3F2                0.010   POU domain, class 3, transcription factor 2 
EP400                 0.010   E1A binding protein p400 
BMP2K                 0.009   BMP-2 inducible kinase isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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