Guide to the Human Genome
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Name: C10orf141 Sequence: fasta or formatted (479aa) NCBI GI: 89886201
Description:

hypothetical protein LOC642938

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         42           3
 C cysteine            3.3         16           1
 D aspartate           4.0         19           2
 E glutamate           8.4         40           2
 F phenylalanine       1.7          8           1
 G glycine             4.8         23           1
 H histidine           1.9          9           1
 I isoleucine          2.5         12           2
 K lysine              7.3         35           2
 L leucine             8.4         40           2
 M methionine          1.7          8           2
 N asparagine          3.8         18           2
 P proline             8.6         41           2
 Q glutamine           6.7         32           2
 R arginine            5.8         28           3
 S serine              8.4         40           3
 T threonine           6.5         31           2
 V valine              4.8         23           2
 W tryptophan          0.6          3           1
 Y tyrosine            2.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC642938 
LOC100131897          0.100   hypothetical protein LOC100131897 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
KLHL29                0.017   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.017   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.017   PREDICTED: kelch repeat and BTB (POZ) domain contai...
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.015   PREDICTED: hypothetical protein FLJ22184 
EP300                 0.014   E1A binding protein p300 
TNKS1BP1              0.014   tankyrase 1-binding protein 1 
IL22RA1               0.013   interleukin 22 receptor, alpha 1 
TCP10L                0.013   T-complex 10A-2 
SRCAP                 0.012   Snf2-related CBP activator protein 
BSN                   0.012   bassoon protein 
PTPRG                 0.011   protein tyrosine phosphatase, receptor type, G prec...
RERE                  0.011   atrophin-1 like protein isoform b 
RERE                  0.011   atrophin-1 like protein isoform a 
RERE                  0.011   atrophin-1 like protein isoform a 
MYPOP                 0.011   Myb protein P42POP 
SEC31B                0.011   SEC31 homolog B 
AAK1                  0.009   AP2 associated kinase 1 
MUC7                  0.009   mucin 7, secreted precursor 
MUC7                  0.009   mucin 7, secreted precursor 
MUC7                  0.009   mucin 7, secreted precursor 
TCP10L2               0.008   t-complex 10-like 2 
LOC100290612          0.008   PREDICTED: hypothetical protein XP_002348127 
PCLO                  0.008   piccolo isoform 2 
PCLO                  0.008   piccolo isoform 1 
SEC16A                0.008   SEC16 homolog A 
LOC100292717          0.008   PREDICTED: similar to arg tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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