Guide to the Human Genome
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Name: SH2D3C Sequence: fasta or formatted (506aa) NCBI GI: 216547779
Description:

SH2 domain containing 3C isoform c

Referenced in:

Mammary Tissues
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [703aa] SH2 domain containing 3C isoform b
alt mRNA [506aa] SH2 domain containing 3C isoform c
alt prot [702aa] SH2 domain containing 3C isoform d
alt prot [700aa] SH2 domain containing 3C isoform e
alt prot [860aa] SH2 domain containing 3C isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         44           2
 C cysteine            1.4          7           1
 D aspartate           3.6         18           1
 E glutamate           7.3         37           2
 F phenylalanine       2.4         12           1
 G glycine             6.5         33           2
 H histidine           3.6         18           2
 I isoleucine          2.4         12           1
 K lysine              4.2         21           2
 L leucine            11.7         59           2
 M methionine          2.8         14           1
 N asparagine          1.4          7           1
 P proline             7.7         39           2
 Q glutamine           3.6         18           2
 R arginine            6.7         34           2
 S serine             10.5         53           3
 T threonine           7.5         38           2
 V valine              5.7         29           2
 W tryptophan          1.2          6           1
 Y tyrosine            1.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH2 domain containing 3C isoform c 
SH2D3C                1.000   SH2 domain containing 3C isoform e 
SH2D3C                1.000   SH2 domain containing 3C isoform d 
SH2D3C                1.000   SH2 domain containing 3C isoform c 
SH2D3C                1.000   SH2 domain containing 3C isoform b 
SH2D3C                1.000   SH2 domain containing 3C isoform a 
BCAR3                 0.327   breast cancer antiestrogen resistance 3 
SH2D3A                0.233   SH2 domain containing 3A 
BAT2D1                0.020   HBxAg transactivated protein 2 
POLR2A                0.019   DNA-directed RNA polymerase II A 
RAPGEF3               0.018   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.018   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.018   Rap guanine nucleotide exchange factor 3 isoform a ...
PRG4                  0.018   proteoglycan 4 isoform D 
PRG4                  0.018   proteoglycan 4 isoform C 
PRG4                  0.018   proteoglycan 4 isoform B 
PRG4                  0.018   proteoglycan 4 isoform A 
ROBO4                 0.018   roundabout homolog 4, magic roundabout 
VASN                  0.018   slit-like 2 
RAPGEF5               0.017   Rap guanine nucleotide exchange factor (GEF) 5 [Hom...
MED15                 0.017   mediator complex subunit 15 isoform a 
SYNJ1                 0.016   synaptojanin 1 isoform a 
SYNJ1                 0.016   synaptojanin 1 isoform b 
LOC100132635          0.015   PREDICTED: similar to mucin 5, partial 
RERE                  0.015   atrophin-1 like protein isoform b 
RERE                  0.015   atrophin-1 like protein isoform a 
RERE                  0.015   atrophin-1 like protein isoform a 
CBX6                  0.015   chromobox homolog 6 
PLEKHG5               0.015   pleckstrin homology domain containing family G membe...
PLEKHG5               0.015   pleckstrin homology domain containing family G memb...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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