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Search of human proteins with 193083150
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|193083150 hypothetical protein LOC346653 isoform b [Homo
sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|193083150 hypothetical protein LOC346653 isoform b [Homo sapi... 610 e-175
gi|149192824 hypothetical protein LOC346653 isoform a [Homo sapi... 602 e-172
gi|14211935 testes development-related NYD-SP18 [Homo sapiens] 275 3e-74
gi|222418633 family with sequence similarity 71, member B [Homo ... 84 2e-16
gi|23503301 hypothetical protein LOC196472 [Homo sapiens] 74 1e-13
gi|23957696 hypothetical protein LOC149647 [Homo sapiens] 73 3e-13
gi|76253859 hypothetical protein LOC112703 [Homo sapiens] 67 2e-11
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 66 4e-11
gi|89363024 hypothetical protein LOC161142 [Homo sapiens] 63 3e-10
gi|134142826 pericentriolar material 1 [Homo sapiens] 33 0.40
gi|11321634 CD2-associated protein [Homo sapiens] 32 0.52
gi|33598950 podocalyxin-like isoform 2 precursor [Homo sapiens] 31 1.5
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 31 1.5
gi|91982772 mucin 17 [Homo sapiens] 30 2.0
gi|122937488 hypothetical LOC646498 [Homo sapiens] 30 2.6
gi|151301204 unc-51-like kinase 4 [Homo sapiens] 30 3.4
gi|18379328 WW domain-containing adapter with a coiled-coil regi... 30 3.4
gi|18379332 WW domain-containing adapter with a coiled-coil regi... 30 3.4
gi|116235448 hypothetical protein LOC81610 [Homo sapiens] 30 3.4
gi|83367077 mucin 16 [Homo sapiens] 29 4.4
gi|94557295 mitogen-activated protein kinase 8 interacting prote... 29 4.4
gi|94557297 mitogen-activated protein kinase 8 interacting prote... 29 4.4
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 29 5.8
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 29 5.8
gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens] 29 5.8
gi|13376810 enhancer of polycomb 1 [Homo sapiens] 29 5.8
gi|112421134 hypothetical protein LOC23742 [Homo sapiens] 29 5.8
gi|5803221 WD repeat-containing protein 3 [Homo sapiens] 28 7.6
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 28 7.6
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6... 28 7.6
>gi|193083150 hypothetical protein LOC346653 isoform b [Homo
sapiens]
Length = 300
Score = 610 bits (1572), Expect = e-175
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRD 60
MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRD
Sbjct: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRD 60
Query: 61 VCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYV 120
VCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYV
Sbjct: 61 VCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYV 120
Query: 121 ELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKF 180
ELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKF
Sbjct: 121 ELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKF 180
Query: 181 THCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDT 240
THCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDT
Sbjct: 181 THCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDT 240
Query: 241 AIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIASYLGEHFLGA 300
AIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIASYLGEHFLGA
Sbjct: 241 AIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIASYLGEHFLGA 300
>gi|149192824 hypothetical protein LOC346653 isoform a [Homo
sapiens]
Length = 309
Score = 602 bits (1552), Expect = e-172
Identities = 300/309 (97%), Positives = 300/309 (97%), Gaps = 9/309 (2%)
Query: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQ--------- 51
MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQ
Sbjct: 1 MSKIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQTHVPEADFQ 60
Query: 52 VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL 111
VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL
Sbjct: 61 VTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINL 120
Query: 112 SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI 171
SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI
Sbjct: 121 SRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSI 180
Query: 172 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ 231
TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ
Sbjct: 181 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQ 240
Query: 232 LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS 291
LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS
Sbjct: 241 LTADRNNDTAIEIDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIAS 300
Query: 292 YLGEHFLGA 300
YLGEHFLGA
Sbjct: 301 YLGEHFLGA 309
>gi|14211935 testes development-related NYD-SP18 [Homo sapiens]
Length = 344
Score = 275 bits (704), Expect = 3e-74
Identities = 151/281 (53%), Positives = 189/281 (67%), Gaps = 4/281 (1%)
Query: 3 KIRGLPPEVREPGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVC 62
+ RGL P EP PG LGVE GLLC+++HSPEFNLF +SVVFESNFIQV + NWRDV
Sbjct: 35 EFRGLLPVDGEPNPGAGLGVEEGLLCRVVHSPEFNLFLDSVVFESNFIQVKRGRNWRDVY 94
Query: 63 EGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYVEL 122
+ S T+ LGVTSSVP LPLPN+LLMA+V W QG TW+ P AP I L R+LPL++VEL
Sbjct: 95 KASNTMALGVTSSVPCLPLPNILLMASVKWHQGQNQTWNRPSIAPNIFLKRILPLRFVEL 154
Query: 123 RIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFTH 182
++ D QRIL++RTVTEKIYYLKLH HPE VF FW+RLV+ILQKGLSITTKDPRI TH
Sbjct: 155 QVCDHYQRILQLRTVTEKIYYLKLHPDHPETVFHFWIRLVQILQKGLSITTKDPRILVTH 214
Query: 183 CLVPK-MPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSG--KPQLTADRNND 239
CLVPK + S ++ L + QPSE L+ L + S + SQ+ Q +
Sbjct: 215 CLVPKNCSSPSGDSKLVQKKLQASQPSESLIQLMTKGESEALSQIFADLHQQNQLSFRSS 274
Query: 240 TAIEIDNCSSYKIPSPVAS-PINLNIPMRAALSHSLWEQED 279
+E + SS K S S P ++ RA+ ++ WE+E+
Sbjct: 275 RKVETNKNSSGKDSSREDSIPCTCDLRWRASFTYGEWEREN 315
>gi|222418633 family with sequence similarity 71, member B [Homo
sapiens]
Length = 605
Score = 84.0 bits (206), Expect = 2e-16
Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 8/146 (5%)
Query: 29 QLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMA 88
QL + E+N+F + +FESNFIQ+ K G DV V +G+ + P LPLP+V+++A
Sbjct: 31 QLYNRGEYNIFKYAPMFESNFIQINKKGEVIDVHNRVRMVTVGIVCTSPILPLPDVMVLA 90
Query: 89 NVTWPQGPFTTWST----PGDAPV--INLSRLLPLKYVELRIYDRLQRILRVRTVTEKIY 142
T W G PV + L+RLLPLK+V++ I+D ++ LR++ T + +
Sbjct: 91 QPTKICEQHVRWGRFAKGRGRRPVKTLELTRLLPLKFVKISIHDHEKQQLRLKLATGRTF 150
Query: 143 YLKL--HEKHPEIVFQFWVRLVKILQ 166
YL+L E +F +W +LV +L+
Sbjct: 151 YLQLCPSSDTREDLFCYWEKLVYLLR 176
>gi|23503301 hypothetical protein LOC196472 [Homo sapiens]
Length = 241
Score = 74.3 bits (181), Expect = 1e-13
Identities = 47/149 (31%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 25 GLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNV 84
G L + ++ E+ +F + +FES+FIQ++K G DV + V +G+ + P L LP+V
Sbjct: 26 GKLQRQLYKGEYTIFRYAPMFESDFIQISKRGEVIDVHNRARMVTMGIVRTSPCLTLPDV 85
Query: 85 LLMANV-----TWPQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTE 139
+L+A GP T A ++ L+RLLPL +V++ I++ +++ L ++ T
Sbjct: 86 MLLARPAAVCDNARCGPATQKRESPPAEILELTRLLPLMFVKITIHNSVKKQLHLKLATG 145
Query: 140 KIYYLKL--HEKHPEIVFQFWVRLVKILQ 166
+ +YL+L E +F W LV IL+
Sbjct: 146 RSFYLQLCPPSDASEDLFVHWENLVYILR 174
>gi|23957696 hypothetical protein LOC149647 [Homo sapiens]
Length = 594
Score = 72.8 bits (177), Expect = 3e-13
Identities = 46/150 (30%), Positives = 81/150 (54%), Gaps = 8/150 (5%)
Query: 25 GLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNV 84
G L + ++ E+++F + +FES+FIQ+TK G DV V +G+ + P LPLP+V
Sbjct: 26 GKLQRQLYKGEYDIFKYAPIFESDFIQITKRGEVIDVHNRVRMVTMGIARTSPILPLPDV 85
Query: 85 LLMANVTW------PQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVT 138
+L+A G T A + L+RLLPL++V + + D ++ LR++ T
Sbjct: 86 MLLARPATGCEEYAGHGQATKRKKRKAAKNLELTRLLPLRFVRISVQDHEKQQLRLKFAT 145
Query: 139 EKIYYLKLHE--KHPEIVFQFWVRLVKILQ 166
+ YL+L + +F +W +L+ +L+
Sbjct: 146 GRSCYLQLCPALDTRDDLFAYWEKLIYLLR 175
>gi|76253859 hypothetical protein LOC112703 [Homo sapiens]
Length = 231
Score = 67.0 bits (162), Expect = 2e-11
Identities = 47/138 (34%), Positives = 74/138 (53%), Gaps = 20/138 (14%)
Query: 27 LCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLL 86
L + + S EF+ F + +FESNF+QVT+ G E + V +GV +S P+L LP++LL
Sbjct: 96 LQRYLQSGEFDQFRDFPIFESNFVQVTRLG------EVANEVTMGVAASSPALELPDLLL 149
Query: 87 MANVTWPQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKL 146
+A G + L L PLK+V+L ++D+ + L V+ T + +YL+L
Sbjct: 150 LAGPAKENGH------------LQLFGLFPLKFVQLFVHDKSRCQLEVKLNTSRTFYLQL 197
Query: 147 HE--KHPEIVFQFWVRLV 162
K + F WVRL+
Sbjct: 198 RAPLKTRDREFGQWVRLL 215
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 65.9 bits (159), Expect = 4e-11
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 12/126 (9%)
Query: 44 VFESNFIQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQGPFTTWSTP 103
+FESNF+QVT G V + + +GV +S+P L LP++LL+ +
Sbjct: 43 MFESNFVQVTHQGGPVFVNHRTNRLAMGVAASLPGLVLPDILLIGQP----------AED 92
Query: 104 GDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEIVFQF--WVRL 161
D + L+R++PL V L ++D L++R V+ + YYL L E+ F F WVRL
Sbjct: 93 RDCSGLVLTRMIPLDLVHLCVHDLSAWRLKLRLVSGRQYYLALDAPDNEVGFLFHCWVRL 152
Query: 162 VKILQK 167
+ +LQ+
Sbjct: 153 INLLQE 158
>gi|89363024 hypothetical protein LOC161142 [Homo sapiens]
Length = 422
Score = 63.2 bits (152), Expect = 3e-10
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 12/177 (6%)
Query: 27 LCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLL 86
L ++ E+ F + + ESNFIQV + G + + V +G+ S + +PNV+L
Sbjct: 29 LQNMLDGGEYAPFVSPPMLESNFIQVNRRGESIYLHNRANWVTVGICFSSSTHKIPNVML 88
Query: 87 MANVTW-----PQGPFTTWSTPGDAPVINLSRLLPLKYVELRIYDRLQRILRVRTVTEKI 141
+A++T + F + T A + L+R LPL++V L ++D L+V+ V+ +
Sbjct: 89 LAHLTPGAQKDTETLFKSLLTSPPAEKLVLTRFLPLQFVTLSVHDAENMSLKVKLVSGRA 148
Query: 142 YYLKL--HEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFTHCLVPKMPTNSTETT 196
YYL+L + +F WV L+ +L + + +K + + TNST+ T
Sbjct: 149 YYLQLCTSAYKQDTLFSQWVALISLLNQEKAKVSKVSEVSSLSGI-----TNSTDIT 200
>gi|134142826 pericentriolar material 1 [Homo sapiens]
Length = 2024
Score = 32.7 bits (73), Expect = 0.40
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 184 LVPKMP-TNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLS 227
LVP++ S + TPE+SL SP P+++ E SG+ SQ S
Sbjct: 1914 LVPRVKEVKSAQETPESSLAGSPDTESPVLVNDYEAESGNISQKS 1958
>gi|11321634 CD2-associated protein [Homo sapiens]
Length = 639
Score = 32.3 bits (72), Expect = 0.52
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 44 VFESNFI---QVTKPGNWRDVCEGSATVILGVTSSVPSLPLPNVLLMANVTWPQ 94
+F SNF+ +VT G + + S TV+ G TS +PSL + +VT P+
Sbjct: 156 LFPSNFVKELEVTDDGETHEAQDDSETVLAGPTSPIPSLGNVSETASGSVTQPK 209
>gi|33598950 podocalyxin-like isoform 2 precursor [Homo sapiens]
Length = 526
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 186 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDT-AIEI 244
P N+T+TT ++S ++P P+ + ++A + S S ++ A T +
Sbjct: 28 PSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSS 87
Query: 245 DNCSSYKIPSPVASPINLNI 264
D+ + + V+ P+N +
Sbjct: 88 DSPGTTTLAQQVSGPVNTTV 107
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 186 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDT-AIEI 244
P N+T+TT ++S ++P P+ + ++A + S S ++ A T +
Sbjct: 28 PSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKANEILASVKATTLGVSS 87
Query: 245 DNCSSYKIPSPVASPINLNI 264
D+ + + V+ P+N +
Sbjct: 88 DSPGTTTLAQQVSGPVNTTV 107
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 30.4 bits (67), Expect = 2.0
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 172 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSE---PLVLLAAEQTSGSFSQLSG 228
T P + + + +NST T PE L PSE PL ++ TS + S+
Sbjct: 3595 TPSTPSVDRSTPVTTSTQSNSTPTPPEVITLPMSTPSEVSTPLTIMPVSTTSVTISEAGT 3654
Query: 229 KPQLTADRNNDTAIEIDNCSSYKIPSPVASPI 260
L D + SS P PI
Sbjct: 3655 ASTLPVDTSTPVITSTQVSSSPVTPEGTTMPI 3686
>gi|122937488 hypothetical LOC646498 [Homo sapiens]
Length = 206
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 14 PGPGVELGVENGLLCQLIHSPEFNLFSNSVVFESNFIQVTKPGNWRDVCEGSATVILGVT 73
PGPG+ +GL LIH + ++ NF ++ G++ G + V
Sbjct: 118 PGPGL-----SGLPQHLIHFVQVQPSHTRTTYQQNFCCPSQGGHYGSYKVGPQAPVTDVL 172
Query: 74 SSVPSLPLPNVL 85
+P +P P +L
Sbjct: 173 PDLPGIPRPKLL 184
>gi|151301204 unc-51-like kinase 4 [Homo sapiens]
Length = 1275
Score = 29.6 bits (65), Expect = 3.4
Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 172 TTKDPRIKFTHCLVPKMPTNSTETTPENS-----LLSSPQPSEPLVLLAAEQTSGSFSQL 226
+T + ++ + L+ PT T T E S SPQ + PL + TSG SQ
Sbjct: 348 STLEGQLNESMFLLSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKI----TSGHLSQQ 403
Query: 227 SGKPQLTADRNNDTAIE----IDNCSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNE 282
+ Q+ D+ + IDN K P L++P + + +DWN+
Sbjct: 404 DLESQMRELIYTDSDLVVTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWND 463
Query: 283 HLLQV 287
L QV
Sbjct: 464 FLQQV 468
>gi|18379328 WW domain-containing adapter with a coiled-coil region
isoform 1 [Homo sapiens]
Length = 647
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 186 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNND----TA 241
P++ T T T P L+S+P S + G SQ + + +TAD+ +
Sbjct: 453 PRISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSP 512
Query: 242 IEIDNCSSYKIPSP 255
+ SS + PSP
Sbjct: 513 RSLQRSSSQRSPSP 526
>gi|18379332 WW domain-containing adapter with a coiled-coil region
isoform 3 [Homo sapiens]
Length = 544
Score = 29.6 bits (65), Expect = 3.4
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 186 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNND----TA 241
P++ T T T P L+S+P S + G SQ + + +TAD+ +
Sbjct: 350 PRISTPQTNTVPIKPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSP 409
Query: 242 IEIDNCSSYKIPSP 255
+ SS + PSP
Sbjct: 410 RSLQRSSSQRSPSP 423
>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
Length = 615
Score = 29.6 bits (65), Expect = 3.4
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 120 VELRIYDRLQRILRVRTVTEKIYYL--------KLHEKHPEIVFQFWVRLVKILQKGLSI 171
++L+++ ++++ VRT+T IYY K+HEK + +++ S
Sbjct: 237 MDLKVHPEQEKLMTVRTITGNIYYARSGTKIIGKVHEKFT------LIDGIRVATGSYSF 290
Query: 172 TTKDPRIKFTHCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSG-KP 230
T D ++ ++ ++ L + +P P LL+ Q+S F L+ KP
Sbjct: 291 TWTDGKLNSSNLVILSGQVVEHFDLEFRILYAQSKPISP-KLLSHFQSSNKFDHLTNRKP 349
Query: 231 Q 231
Q
Sbjct: 350 Q 350
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.3 bits (64), Expect = 4.4
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 184 LVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIE 243
++P PT + T L+S P EPLVL +EQT+ + + + T ++
Sbjct: 1420 VIPTSPTIGSSTLE----LTSDVPGEPLVLAPSEQTTITLPMATWLSTSLTEEMASTDLD 1475
Query: 244 IDNCSS----YKIPSPVASP 259
I + SS + I P+++P
Sbjct: 1476 ISSPSSPMSTFAIFPPMSTP 1495
Score = 28.1 bits (61), Expect = 9.9
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 188 MPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEIDNC 247
+P +S T E SS P ++ E TS + + +LT + ++ +
Sbjct: 4876 IPKSSKTTRTETETTSSLTPKLRETSISQEITSSTETSTVPYKELTGATTEVSRTDVTSS 4935
Query: 248 SSYKIPSPVASPINLNI 264
SS P P S ++L+I
Sbjct: 4936 SSTSFPGPDQSTVSLDI 4952
>gi|94557295 mitogen-activated protein kinase 8 interacting protein
3 isoform 2 [Homo sapiens]
Length = 1330
Score = 29.3 bits (64), Expect = 4.4
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 189 PTNSTETTPENSLLSSPQPSEP--LVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEIDN 246
P+ STE E + + P PSEP L T F+ + P ++ E D+
Sbjct: 882 PSQSTEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPTPSSGPQPGSENGPEPDS 941
Query: 247 CSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIA 290
S+ P P P AA + L Q W L VH A
Sbjct: 942 SSTRPEPEPSGDPTGAG--SSAAPTMWLGAQNGW----LYVHSA 979
>gi|94557297 mitogen-activated protein kinase 8 interacting protein
3 isoform 1 [Homo sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 4.4
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 189 PTNSTETTPENSLLSSPQPSEP--LVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEIDN 246
P+ STE E + + P PSEP L T F+ + P ++ E D+
Sbjct: 888 PSQSTEEATEATEVPDPGPSEPETATLRPGPLTEHVFTDPAPTPSSGPQPGSENGPEPDS 947
Query: 247 CSSYKIPSPVASPINLNIPMRAALSHSLWEQEDWNEHLLQVHIA 290
S+ P P P AA + L Q W L VH A
Sbjct: 948 SSTRPEPEPSGDPTGAG--SSAAPTMWLGAQNGW----LYVHSA 985
>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
Length = 1726
Score = 28.9 bits (63), Expect = 5.8
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 186 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEID 245
P++P +++ ++ SL+ LL ++ TSG+F S Q + + I
Sbjct: 1012 PRLPISASHSSKTRSLVGG--------LLQSKFTSGAFLSPSVSVQECRTPRAASLMNIP 1063
Query: 246 NCSSYKIPSPVASPINLNIP 265
+ SS+ +P P+ S + P
Sbjct: 1064 STSSWSVPPPLTSVFTMPSP 1083
>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
Length = 1800
Score = 28.9 bits (63), Expect = 5.8
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 186 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEID 245
P++P +++ ++ SL+ LL ++ TSG+F S Q + + I
Sbjct: 1012 PRLPISASHSSKTRSLVGG--------LLQSKFTSGAFLSPSVSVQECRTPRAASLMNIP 1063
Query: 246 NCSSYKIPSPVASPINLNIP 265
+ SS+ +P P+ S + P
Sbjct: 1064 STSSWSVPPPLTSVFTMPSP 1083
>gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]
Length = 960
Score = 28.9 bits (63), Expect = 5.8
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 123 RIYDRLQRILRVRTVT-EKIYYLKLHEKHPEIVFQFWVRLVKILQKGLSITTKDPRIKFT 181
R+ RLQ ++ T+ EK ++ K E+ + WV+ K+ Q +T +P+ +
Sbjct: 609 RLEARLQGMVTETTMKWEKECERRVAAKQLEMQNKLWVKDEKLKQLKAIVT--EPKTE-- 664
Query: 182 HCLVPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTA 241
P+ P+ + SP P A+ ++G QL +PQL N+ ++
Sbjct: 665 ---KPERPSRERDREKVTQRSVSPSPVPLSSNYIAQISNGQ--QLMSQPQLHRRSNSCSS 719
Query: 242 IEIDNCSS---YKIPS 254
I + +C S KIP+
Sbjct: 720 ISVASCISEWEQKIPT 735
>gi|13376810 enhancer of polycomb 1 [Homo sapiens]
Length = 836
Score = 28.9 bits (63), Expect = 5.8
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 193 TETTPENSLLSSPQPSEPLVLLAAE--QTSGSFSQLSGKPQLTADRNNDTAIEIDNCSSY 250
+ TTP + +SP + +L + QTS S S LS Q+TA + T + I N
Sbjct: 700 SSTTPTALVHTSPSTAGSALLQPSNITQTSSSHSALS--HQVTAANSATTQVLIGNNIRL 757
Query: 251 KIPSPVASPINLNIPMRA 268
+PS VA+ +N P+ A
Sbjct: 758 TVPSSVAT-VNSIAPINA 774
>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
Length = 1156
Score = 28.9 bits (63), Expect = 5.8
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 186 PKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEID 245
PKM T P NS L+ P P++ + + GS++ + G LT+D +
Sbjct: 448 PKMDEKIAFTIP-NSPLALPADLVPILGDQSNEKGGSYNSVVGAAPLTSDPPTPPS---- 502
Query: 246 NCSSYKIPSPVASPINLNIPMRAALS 271
+ S+K P SPI++ + LS
Sbjct: 503 STPSFKPPVTRESPISMCVDSPPPLS 528
>gi|5803221 WD repeat-containing protein 3 [Homo sapiens]
Length = 943
Score = 28.5 bits (62), Expect = 7.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 120 VELRIYDRLQRILRVRTVTEKIYYLKLHEKHPEI--VFQFWVRLVKILQKGLSITTKDP 176
VE+ + D +QR+ ++T + + +H H E+ VF LV++ S+ T P
Sbjct: 345 VEMSLQDEIQRVTNIKTSAKIKSFDLIHSPHGELKAVFLLQNNLVELYSLNPSLPTPQP 403
>gi|148806908 fibronectin type III domain containing 1 [Homo
sapiens]
Length = 1894
Score = 28.5 bits (62), Expect = 7.6
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 185 VPKMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEI 244
+P +P P SL + P+P P A+ S S +P L A N++ ++
Sbjct: 588 MPALPRREGVDKPGFSLATQPRPGAPPSASASPAHHASTQGTSHRPSLPASLNDNDLVDS 647
Query: 245 D 245
D
Sbjct: 648 D 648
>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
isoform a [Homo sapiens]
Length = 1047
Score = 28.5 bits (62), Expect = 7.6
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 187 KMPTNSTETTPENSLLSSPQPSEPLVLLAAEQTSGSFSQLSGKPQLTADRNNDTAIEI 244
++ T S +T N L + Q + P + L+AE T+ LS + LTA DT EI
Sbjct: 172 ELDTASRKTQRVNKTLPAGQKNLPEIPLSAEVTTEESFYLSIQKDLTALLTGDTQAEI 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,258,193
Number of Sequences: 37866
Number of extensions: 650760
Number of successful extensions: 2051
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2009
Number of HSP's gapped (non-prelim): 52
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.