Guide to the Human Genome
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Name: LOC646498 Sequence: fasta or formatted (206aa) NCBI GI: 122937488
Description:

hypothetical LOC646498

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          7           1
 C cysteine            3.9          8           2
 D aspartate           4.4          9           1
 E glutamate           3.4          7           1
 F phenylalanine       4.4          9           2
 G glycine             7.3         15           2
 H histidine           4.9         10           1
 I isoleucine          2.4          5           1
 K lysine              3.9          8           1
 L leucine            10.7         22           2
 M methionine          0.5          1           1
 N asparagine          2.4          5           1
 P proline             9.7         20           1
 Q glutamine           8.7         18           2
 R arginine            7.3         15           2
 S serine              8.7         18           2
 T threonine           4.9         10           2
 V valine              2.9          6           1
 W tryptophan          2.4          5           1
 Y tyrosine            3.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical LOC646498 
FAM71F2               0.012   hypothetical protein LOC346653 isoform b 
SEC16A                0.009   SEC16 homolog A 
EMID2                 0.009   EMI domain containing 2 
LOC100292304          0.007   PREDICTED: hypothetical protein 
LOC100286995          0.007   PREDICTED: hypothetical protein 
LOC100286995          0.007   PREDICTED: hypothetical protein XP_002344221 
CAD                   0.007   carbamoylphosphate synthetase 2/aspartate transcarba...
PLD4                  0.005   phospholipase D4 
KLKBL4                0.005   plasma kallikrein-like protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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