Guide to the Human Genome
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Name: ZSCAN23 Sequence: fasta or formatted (389aa) NCBI GI: 190883486
Description:

zinc finger protein 390

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         16           2
 C cysteine            4.1         16           1
 D aspartate           2.1          8           2
 E glutamate          13.4         52           5
 F phenylalanine       3.3         13           1
 G glycine             6.2         24           1
 H histidine           4.9         19           2
 I isoleucine          4.4         17           1
 K lysine              4.9         19           1
 L leucine             8.7         34           2
 M methionine          0.8          3           1
 N asparagine          3.3         13           2
 P proline             4.4         17           1
 Q glutamine           8.7         34           1
 R arginine            7.5         29           3
 S serine              6.4         25           3
 T threonine           4.6         18           1
 V valine              5.1         20           1
 W tryptophan          0.8          3           1
 Y tyrosine            2.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 390 
ZNF193                0.498   zinc finger protein 193 
ZNF323                0.489   zinc finger protein 323 
ZNF323                0.489   zinc finger protein 323 
ZNF323                0.489   zinc finger protein 323 
ZNF323                0.489   zinc finger protein 323 
ZSCAN12               0.476   zinc finger and SCAN domain containing 12 
ZNF24                 0.425   zinc finger protein 24 
ZNF192                0.420   zinc finger protein 192 
ZNF397                0.417   zinc finger protein 397 isoform 1 
ZNF397OS              0.414   zinc finger protein 397 opposite strand 
ZSCAN16               0.410   zinc finger and SCAN domain containing 16 
ZSCAN21               0.394   zinc finger protein 38 
ZNF165                0.375   zinc finger protein 165 
ZKSCAN3               0.341   zinc finger with KRAB and SCAN domains 3 
ZNF213                0.328   zinc finger protein 213 
ZNF213                0.328   zinc finger protein 213 
ZSCAN22               0.323   zinc finger and SCAN domain containing 22 
ZNF187                0.315   zinc finger protein 187 isoform b 
ZNF187                0.314   zinc finger protein 187 isoform a 
ZSCAN2                0.310   zinc finger protein 29 isoform 1 
ZNF396                0.298   zinc finger protein 396 
ZNF394                0.288   zinc finger protein 394 
ZNF551                0.247   zinc finger protein 551 
ZNF250                0.243   zinc finger protein 250 isoform b 
ZNF250                0.243   zinc finger protein 250 isoform a 
ZNF79                 0.236   zinc finger protein 79 
ZNF389                0.234   zinc finger protein 389 
ZNF3                  0.234   zinc finger protein 3 isoform 2 
ZNF436                0.234   zinc finger protein 436 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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