Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZSCAN12 Sequence: fasta or formatted (611aa) NCBI GI: 254281232
Description:

zinc finger and SCAN domain containing 12

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         21           1
 C cysteine            5.1         31           1
 D aspartate           3.4         21           2
 E glutamate          12.1         74           3
 F phenylalanine       3.1         19           1
 G glycine             6.2         38           1
 H histidine           6.4         39           2
 I isoleucine          4.1         25           2
 K lysine              7.4         45           1
 L leucine             5.9         36           2
 M methionine          1.1          7           1
 N asparagine          2.6         16           2
 P proline             3.6         22           1
 Q glutamine           8.0         49           2
 R arginine            6.7         41           2
 S serine              7.0         43           2
 T threonine           6.2         38           2
 V valine              3.8         23           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.9         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and SCAN domain containing 12 
ZSCAN2                0.387   zinc finger protein 29 isoform 1 
ZNF397                0.372   zinc finger protein 397 isoform 1 
ZNF167                0.371   zinc finger protein 167 isoform 1 
ZNF502                0.367   zinc finger protein 502 
ZNF502                0.367   zinc finger protein 502 
ZNF502                0.367   zinc finger protein 502 
ZNF502                0.367   zinc finger protein 502 
ZNF420                0.354   zinc finger protein 420 
ZNF85                 0.352   zinc finger protein 85 
ZNF184                0.350   zinc finger protein 184 
ZNF345                0.350   zinc finger protein 345 
ZNF192                0.349   zinc finger protein 192 
ZNF665                0.348   zinc finger protein 665 
DKFZp686E2433         0.347   hypothetical protein LOC345462 
ZNF852                0.345   PREDICTED: zinc finger protein 852 
ZNF135                0.345   zinc finger protein 135 
ZNF678                0.345   zinc finger protein 678 
ZNF568                0.343   zinc finger protein 568 
ZNF347                0.343   zinc finger protein 347 
ZNF852                0.343   PREDICTED: zinc finger protein 852 
ZNF852                0.343   PREDICTED: zinc finger protein 852 
LOC647678             0.342   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.342   PREDICTED: hypothetical protein XP_002343697 
ZNF287                0.342   zinc finger protein 287 
ZNF160                0.341   zinc finger protein 160 
ZNF160                0.341   zinc finger protein 160 
ZNF160                0.341   zinc finger protein 160 
LOC647678             0.339   PREDICTED: similar to zinc finger protein 347 [Homo...
ZNF83                 0.339   zinc finger protein 83 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press