Guide to the Human Genome
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Name: ZNF193 Sequence: fasta or formatted (394aa) NCBI GI: 5454180
Description:

zinc finger protein 193

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8         11           1
 C cysteine            4.6         18           1
 D aspartate           2.5         10           1
 E glutamate          11.9         47           2
 F phenylalanine       2.5         10           1
 G glycine             5.6         22           1
 H histidine           6.3         25           1
 I isoleucine          4.3         17           1
 K lysine              6.3         25           1
 L leucine             9.6         38           2
 M methionine          1.3          5           1
 N asparagine          2.5         10           1
 P proline             4.6         18           1
 Q glutamine           8.4         33           2
 R arginine            7.6         30           2
 S serine              7.1         28           2
 T threonine           4.1         16           1
 V valine              4.8         19           1
 W tryptophan          1.5          6           1
 Y tyrosine            1.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 193 
ZSCAN23               0.484   zinc finger protein 390 
ZNF323                0.417   zinc finger protein 323 
ZNF323                0.417   zinc finger protein 323 
ZNF323                0.417   zinc finger protein 323 
ZNF323                0.417   zinc finger protein 323 
ZNF192                0.405   zinc finger protein 192 
ZSCAN12               0.391   zinc finger and SCAN domain containing 12 
ZSCAN16               0.381   zinc finger and SCAN domain containing 16 
ZNF397                0.376   zinc finger protein 397 isoform 1 
ZKSCAN3               0.361   zinc finger with KRAB and SCAN domains 3 
ZNF232                0.355   zinc finger protein 232 
ZNF24                 0.352   zinc finger protein 24 
ZSCAN21               0.352   zinc finger protein 38 
ZNF165                0.342   zinc finger protein 165 
ZNF397OS              0.336   zinc finger protein 397 opposite strand 
ZKSCAN1               0.319   zinc finger protein 36 
ZNF187                0.319   zinc finger protein 187 isoform b 
ZNF187                0.315   zinc finger protein 187 isoform a 
ZSCAN2                0.296   zinc finger protein 29 isoform 1 
ZKSCAN4               0.273   zinc finger with KRAB and SCAN domains 4 
ZNF396                0.259   zinc finger protein 396 
ZNF394                0.259   zinc finger protein 394 
ZNF551                0.225   zinc finger protein 551 
ZNF389                0.222   zinc finger protein 389 
ZNF174                0.222   zinc finger protein 174 isoform a 
ZNF3                  0.218   zinc finger protein 3 isoform 2 
ZNF383                0.217   zinc finger protein 383 
ZNF586                0.217   zinc finger protein 586 
ZNF16                 0.214   zinc finger protein 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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