Guide to the Human Genome
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Name: ZNF187 Sequence: fasta or formatted (479aa) NCBI GI: 161353481
Description:

zinc finger protein 187 isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [344aa] zinc finger protein 187 isoform c
alt prot [478aa] zinc finger protein 187 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         18           1
 C cysteine            4.6         22           1
 D aspartate           2.3         11           1
 E glutamate          11.5         55           2
 F phenylalanine       2.7         13           1
 G glycine             5.8         28           1
 H histidine           7.7         37           2
 I isoleucine          4.0         19           2
 K lysine              8.6         41           2
 L leucine            10.2         49           3
 M methionine          0.6          3           1
 N asparagine          2.7         13           1
 P proline             3.5         17           1
 Q glutamine           8.4         40           2
 R arginine            6.5         31           2
 S serine              6.9         33           3
 T threonine           3.8         18           2
 V valine              4.6         22           4
 W tryptophan          0.4          2           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 187 isoform a 
ZNF187                0.994   zinc finger protein 187 isoform b 
ZNF187                0.716   zinc finger protein 187 isoform c 
ZNF397                0.373   zinc finger protein 397 isoform 1 
ZNF397OS              0.364   zinc finger protein 397 opposite strand 
ZSCAN12               0.361   zinc finger and SCAN domain containing 12 
ZNF192                0.345   zinc finger protein 192 
ZNF323                0.329   zinc finger protein 323 
ZNF323                0.329   zinc finger protein 323 
ZNF323                0.329   zinc finger protein 323 
ZNF323                0.329   zinc finger protein 323 
ZKSCAN3               0.327   zinc finger with KRAB and SCAN domains 3 
ZSCAN21               0.311   zinc finger protein 38 
ZSCAN2                0.307   zinc finger protein 29 isoform 1 
ZNF165                0.305   zinc finger protein 165 
ZNF232                0.283   zinc finger protein 232 
ZNF135                0.278   zinc finger protein 135 
ZNF79                 0.278   zinc finger protein 79 
ZNF167                0.276   zinc finger protein 167 isoform 1 
ZNF16                 0.276   zinc finger protein 16 
ZNF16                 0.276   zinc finger protein 16 
ZNF681                0.275   zinc finger protein 681 
ZNF420                0.273   zinc finger protein 420 
ZNF83                 0.273   zinc finger protein 83 isoform a 
ZNF83                 0.273   zinc finger protein 83 isoform a 
ZNF83                 0.273   zinc finger protein 83 isoform a 
ZNF83                 0.273   zinc finger protein 83 isoform a 
ZNF83                 0.273   zinc finger protein 83 isoform a 
ZNF678                0.272   zinc finger protein 678 
ZNF852                0.271   PREDICTED: zinc finger protein 852 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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