Guide to the Human Genome
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Name: ZNF165 Sequence: fasta or formatted (485aa) NCBI GI: 4508001
Description:

zinc finger protein 165

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         23           3
 C cysteine            4.3         21           2
 D aspartate           3.3         16           1
 E glutamate          11.3         55           4
 F phenylalanine       4.1         20           1
 G glycine             6.2         30           1
 H histidine           5.8         28           1
 I isoleucine          5.8         28           2
 K lysine              6.8         33           2
 L leucine             8.0         39           2
 M methionine          0.8          4           1
 N asparagine          3.5         17           1
 P proline             3.5         17           2
 Q glutamine           6.6         32           1
 R arginine            7.0         34           2
 S serine              9.1         44           2
 T threonine           3.7         18           1
 V valine              2.7         13           1
 W tryptophan          1.0          5           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 165 
ZNF397OS              0.386   zinc finger protein 397 opposite strand 
ZNF397                0.371   zinc finger protein 397 isoform 1 
ZNF192                0.343   zinc finger protein 192 
ZSCAN12               0.339   zinc finger and SCAN domain containing 12 
ZKSCAN1               0.328   zinc finger protein 36 
ZNF323                0.322   zinc finger protein 323 
ZNF323                0.322   zinc finger protein 323 
ZNF323                0.322   zinc finger protein 323 
ZNF323                0.322   zinc finger protein 323 
ZSCAN21               0.321   zinc finger protein 38 
ZKSCAN3               0.313   zinc finger with KRAB and SCAN domains 3 
ZSCAN22               0.305   zinc finger and SCAN domain containing 22 
ZNF187                0.301   zinc finger protein 187 isoform b 
ZNF187                0.301   zinc finger protein 187 isoform a 
ZNF167                0.291   zinc finger protein 167 isoform 1 
ZNF232                0.289   zinc finger protein 232 
ZNF394                0.280   zinc finger protein 394 
ZSCAN2                0.261   zinc finger protein 29 isoform 1 
ZSCAN23               0.260   zinc finger protein 390 
ZKSCAN5               0.260   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.260   zinc finger with KRAB and SCAN domains 5 
ZNF3                  0.230   zinc finger protein 3 isoform 2 
ZNF251                0.225   zinc finger protein 251 
ZFP3                  0.222   zinc finger protein-3 
LOC344065             0.221   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.221   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.221   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF852                0.217   PREDICTED: zinc finger protein 852 
ZNF852                0.217   PREDICTED: zinc finger protein 852 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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