Guide to the Human Genome
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Name: ZSCAN16 Sequence: fasta or formatted (348aa) NCBI GI: 13376834
Description:

zinc finger and SCAN domain containing 16

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4         12           1
 C cysteine            3.4         12           1
 D aspartate           6.0         21           1
 E glutamate          10.3         36           2
 F phenylalanine       2.3          8           1
 G glycine             6.0         21           1
 H histidine           5.5         19           2
 I isoleucine          4.0         14           2
 K lysine              8.9         31           2
 L leucine             9.5         33           2
 M methionine          0.9          3           1
 N asparagine          2.0          7           1
 P proline             5.7         20           1
 Q glutamine           6.6         23           2
 R arginine            8.6         30           3
 S serine              5.2         18           3
 T threonine           4.9         17           2
 V valine              2.6          9           1
 W tryptophan          1.4          5           1
 Y tyrosine            2.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger and SCAN domain containing 16 
ZNF323                0.459   zinc finger protein 323 
ZNF323                0.459   zinc finger protein 323 
ZNF323                0.459   zinc finger protein 323 
ZNF323                0.459   zinc finger protein 323 
ZSCAN23               0.449   zinc finger protein 390 
ZNF193                0.429   zinc finger protein 193 
ZNF24                 0.417   zinc finger protein 24 
ZNF397                0.405   zinc finger protein 397 isoform 1 
ZSCAN12               0.404   zinc finger and SCAN domain containing 12 
ZKSCAN3               0.390   zinc finger with KRAB and SCAN domains 3 
ZSCAN21               0.370   zinc finger protein 38 
ZKSCAN4               0.369   zinc finger with KRAB and SCAN domains 4 
ZNF232                0.366   zinc finger protein 232 
ZNF397OS              0.365   zinc finger protein 397 opposite strand 
ZNF165                0.348   zinc finger protein 165 
ZNF187                0.335   zinc finger protein 187 isoform b 
ZNF187                0.332   zinc finger protein 187 isoform a 
ZSCAN22               0.311   zinc finger and SCAN domain containing 22 
ZNF192                0.300   zinc finger protein 192 
ZNF396                0.293   zinc finger protein 396 
ZSCAN2                0.279   zinc finger protein 29 isoform 1 
ZNF174                0.258   zinc finger protein 174 isoform a 
ZKSCAN1               0.240   zinc finger protein 36 
SCAND3                0.233   SCAN domain containing 3 
ZNF397                0.222   zinc finger protein 397 isoform 2 
ZNF389                0.213   zinc finger protein 389 
ZNF3                  0.212   zinc finger protein 3 isoform 2 
ZFP3                  0.212   zinc finger protein-3 
ZNF135                0.208   zinc finger protein 135 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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