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Search of human proteins with 190610047
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190610047 late cornified envelope 6A [Homo sapiens]
(80 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190610047 late cornified envelope 6A [Homo sapiens] 181 1e-46
gi|30410039 late cornified envelope 3A [Homo sapiens] 43 5e-05
gi|30410035 late cornified envelope 5A [Homo sapiens] 38 0.002
gi|14211869 late cornified envelope 3D [Homo sapiens] 37 0.003
gi|30410033 late cornified envelope 3E [Homo sapiens] 36 0.006
gi|30410045 late cornified envelope 2A [Homo sapiens] 36 0.006
gi|30410041 late cornified envelope 3B [Homo sapiens] 35 0.013
gi|30387642 late cornified envelope 4A [Homo sapiens] 33 0.049
gi|30410037 late cornified envelope 3C [Homo sapiens] 33 0.064
gi|194353964 coiled-coil domain containing 157 [Homo sapiens] 33 0.064
gi|45827734 small proline-rich protein 1A [Homo sapiens] 33 0.064
gi|114431236 zinc finger protein 462 [Homo sapiens] 32 0.084
gi|83582815 small proline-rich protein 1B [Homo sapiens] 32 0.084
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens] 32 0.14
gi|30410047 late cornified envelope 2C [Homo sapiens] 31 0.24
gi|22212925 nuclear transcription factor, X-box binding 1 isofor... 30 0.42
gi|21361137 nuclear transcription factor, X-box binding 1 isofor... 30 0.42
gi|7657685 late cornified envelope 2B [Homo sapiens] 30 0.42
gi|30410043 late cornified envelope 2D [Homo sapiens] 30 0.42
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 30 0.54
gi|32479521 dishevelled 1 [Homo sapiens] 29 0.93
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 29 0.93
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 29 0.93
gi|116805330 small conductance calcium-activated potassium chann... 28 1.2
gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 28 1.2
gi|30387656 late cornified envelope 1B [Homo sapiens] 28 1.2
gi|38158011 cell death-inducing DFFA-like effector a isoform 2 [... 28 1.2
gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [H... 28 1.2
gi|50952466 host cell factor C1 regulator 1 (XPO1 dependant) iso... 28 1.2
gi|8923536 host cell factor C1 regulator 1 (XPO1 dependant) isof... 28 1.2
>gi|190610047 late cornified envelope 6A [Homo sapiens]
Length = 80
Score = 181 bits (458), Expect = 1e-46
Identities = 80/80 (100%), Positives = 80/80 (100%)
Query: 1 MSQQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKPRRARQK 60
MSQQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKPRRARQK
Sbjct: 1 MSQQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKPRRARQK 60
Query: 61 LRCLSRGTTYHCKEEECEGD 80
LRCLSRGTTYHCKEEECEGD
Sbjct: 61 LRCLSRGTTYHCKEEECEGD 80
>gi|30410039 late cornified envelope 3A [Homo sapiens]
Length = 89
Score = 43.1 bits (100), Expect = 5e-05
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 3 QQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKPRRARQKLR 62
QQ QQ +PP PKC P + CL P S+ C AP S GC SS+R R R+ R
Sbjct: 4 QQNQQQCQPP--PKC-PAKSPAQCLPPASSSC-APSSGGCGPSSERSCCLSHHRCRRSHR 59
Query: 63 C 63
C
Sbjct: 60 C 60
>gi|30410035 late cornified envelope 5A [Homo sapiens]
Length = 118
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 11 PPNVPKCSPPQRSNPCLAPYSTPCG-------APHSEGCHSSSQRPEVQKPRRARQKLRC 63
PP P PPQ S PC P S+ CG + GC S RP Q RR Q C
Sbjct: 29 PPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCCSSEGGGCCLSHHRPR-QSLRRRPQSSSC 87
Query: 64 LSRGTTYHCKEEEC 77
G+ C
Sbjct: 88 CGSGSGQQSGGSSC 101
Score = 32.7 bits (73), Expect = 0.064
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 3 QQKQQSWKPPNVPKCSP--PQRSNP---------CLAPYSTPCGAPHSEGCHSSS 46
QQ QQ +PP PKC+P P + P C S PC P S C SSS
Sbjct: 4 QQSQQQCQPP--PKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSS 56
>gi|14211869 late cornified envelope 3D [Homo sapiens]
Length = 92
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 3 QQKQQSWKPPNVPKCS----PPQRSNPCLAPYSTPCGAPHSEGCHSSSQ 47
QQ QQ +PP PKC PP+ CL P S+ C AP S GC SS+
Sbjct: 4 QQNQQQCQPP--PKCPSPKCPPKSPVQCLPPASSGC-APSSGGCGPSSE 49
>gi|30410033 late cornified envelope 3E [Homo sapiens]
Length = 92
Score = 36.2 bits (82), Expect = 0.006
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 3 QQKQQSWKPPNVPKCS----PPQRSNPCLAPYSTPCGAPHSEGCHSSSQ 47
QQ Q+ +PP PKC PP+ CL P S+ C AP S GC SS+
Sbjct: 4 QQNQKQCQPP--PKCPSPKCPPKNPVQCLPPASSGC-APSSGGCGPSSE 49
>gi|30410045 late cornified envelope 2A [Homo sapiens]
Length = 106
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/53 (45%), Positives = 26/53 (49%), Gaps = 10/53 (18%)
Query: 3 QQKQQSWKPPNV------PKCSP---PQRSNPCLAPYSTPCGAPHSEGCHSSS 46
QQ QQ +PP PKC P PQ PC P S+ CG P S GC SS
Sbjct: 4 QQNQQQCQPPPKCPPKCPPKCPPKCRPQCPAPCPPPVSSCCG-PSSGGCCGSS 55
>gi|30410041 late cornified envelope 3B [Homo sapiens]
Length = 95
Score = 35.0 bits (79), Expect = 0.013
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 3 QQKQQSWKPPNVPKCS----PPQRSNPCLAPYSTPC-------GAPHSEGCHSSSQRPEV 51
QQ QQ +P +PKC PP+ S CL P S+ C G P SEG S
Sbjct: 4 QQNQQQCQP--LPKCPSPKCPPKSSAQCLPPASSCCAPRPGCCGGPSSEGGCCLSHHRCC 61
Query: 52 QKPRRARQKLRCLSRGTTYHCKEEEC 77
+ R RQ RG+ +C
Sbjct: 62 RSHRCRRQSSNSCDRGSGQQDGASDC 87
>gi|30387642 late cornified envelope 4A [Homo sapiens]
Length = 99
Score = 33.1 bits (74), Expect = 0.049
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 3 QQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSS 46
QQ QQ +PP PKC P+ C + ++ C P S C SSS
Sbjct: 4 QQNQQQCQPP--PKCPIPKYPPKCPSKCASSCPPPISSCCGSSS 45
>gi|30410037 late cornified envelope 3C [Homo sapiens]
Length = 94
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 3 QQKQQSWKPPNV--PKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQ 47
Q +QQ PP+ PKC PP+ CL P S+ C A S GC SS+
Sbjct: 5 QNQQQCQPPPSCPSPKC-PPKSPAQCLPPPSSDC-ALSSGGCGPSSE 49
>gi|194353964 coiled-coil domain containing 157 [Homo sapiens]
Length = 752
Score = 32.7 bits (73), Expect = 0.064
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 6 QQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQ 47
Q PP P SPP++ PC +P PC +P + C S+
Sbjct: 668 QPCTSPPRQPCTSPPRQ--PCTSPPRQPCTSPSRQPCSQPSK 707
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 15 PKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRP 49
P SPP++ PC +P PC +P + C S S++P
Sbjct: 669 PCTSPPRQ--PCTSPPRQPCTSPPRQPCTSPSRQP 701
>gi|45827734 small proline-rich protein 1A [Homo sapiens]
Length = 89
Score = 32.7 bits (73), Expect = 0.064
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 2 SQQKQQSWKPPNVPK-------CSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQ---RPEV 51
SQQ++Q PP P+ C PP + PC+ PC E CH +P+V
Sbjct: 3 SQQQKQPCTPPPQPQQQQVKQPCQPPPQE-PCIPKTKEPCHPKVPEPCHPKVPEPCQPKV 61
Query: 52 QKPRRARQKLRCLSRGT 68
+P + + C S T
Sbjct: 62 PEPCQPKVPEPCPSTVT 78
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 32.3 bits (72), Expect = 0.084
Identities = 17/56 (30%), Positives = 23/56 (41%)
Query: 4 QKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKPRRARQ 59
Q+QQ +PP P PP + P P PH +Q P Q+P+ Q
Sbjct: 538 QQQQPPQPPPPPPPPPPSQPQPLQQPQPPQLQPPHQVPPQPQTQPPPTQQPQPPTQ 593
>gi|83582815 small proline-rich protein 1B [Homo sapiens]
Length = 89
Score = 32.3 bits (72), Expect = 0.084
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 2 SQQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRP 49
SQQ++Q PP P+ Q PC P PC E CH P
Sbjct: 3 SQQQKQPCTPP--PQLQQQQVKQPCQPPPQEPCIPKTKEPCHPKVPEP 48
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 3 QQKQQSWKPPNVPK------CSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRP 49
QQKQ PP + + C PP + PC+ PC E CH P
Sbjct: 5 QQKQPCTPPPQLQQQQVKQPCQPPPQE-PCIPKTKEPCHPKVPEPCHPKVPEP 56
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 3 QQKQQSWKPPNVPKCSP-------PQRSNPCLAPYSTPCGAPHSEGCHSSSQR--PEVQK 53
QQ +Q +PP C P P+ PC PC E CH P +
Sbjct: 19 QQVKQPCQPPPQEPCIPKTKEPCHPKVPEPCHPKVPEPCQPKVPEPCHPKVPEPCPSIVT 78
Query: 54 PRRARQKLR 62
P A+QK +
Sbjct: 79 PAPAQQKTK 87
>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
Length = 457
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 17 CSPPQRSNPCLAPYSTPC------GAPHSEGCHSSSQRPEVQK-------PRRARQKLRC 63
C P++ P PYSTP G+ HS SSS V PR + C
Sbjct: 27 CLLPEKGLPAPGPYSTPLRTPLWNGSNHSIETQSSSSEEIVPSPPSPPPLPRIYKPCFVC 86
Query: 64 LSRGTTYHCKEEECEG 79
+ + YH CEG
Sbjct: 87 QDKSSGYHYGVSACEG 102
>gi|30410047 late cornified envelope 2C [Homo sapiens]
Length = 110
Score = 30.8 bits (68), Expect = 0.24
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 28/91 (30%)
Query: 3 QQKQQSWKPPNV--PKCSP-----------PQRSNPCLAPYSTPCG-------APHSEGC 42
QQ QQ +PP PKC+P PQ PC S+ CG P S GC
Sbjct: 4 QQNQQQCQPPPKCPPKCTPKCPPKCPPKCPPQCPAPCFPAVSSCCGPSSGSCCGPSSGGC 63
Query: 43 HSSS--------QRPEVQKPRRARQKLRCLS 65
SS RP + RR + C S
Sbjct: 64 CSSGAGGCSLSHHRPRLFHRRRHQSPDCCES 94
>gi|22212925 nuclear transcription factor, X-box binding 1 isoform 2
[Homo sapiens]
Length = 1024
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 25 PCLAPYSTP---CGAPHSEGCHSSSQRPEVQKPRRARQKLRCLSRGTTYHCKE 74
PC P +TP CG P CH+SS P + + C R C E
Sbjct: 851 PCKQPCTTPRADCGHPCMAPCHTSSPCPVTACKAKVELQCECGRRKEMVICSE 903
>gi|21361137 nuclear transcription factor, X-box binding 1 isoform 1
[Homo sapiens]
Length = 1120
Score = 30.0 bits (66), Expect = 0.42
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 25 PCLAPYSTP---CGAPHSEGCHSSSQRPEVQKPRRARQKLRCLSRGTTYHCKE 74
PC P +TP CG P CH+SS P + + C R C E
Sbjct: 851 PCKQPCTTPRADCGHPCMAPCHTSSPCPVTACKAKVELQCECGRRKEMVICSE 903
>gi|7657685 late cornified envelope 2B [Homo sapiens]
Length = 110
Score = 30.0 bits (66), Expect = 0.42
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 14/53 (26%)
Query: 3 QQKQQSWKPPNV--PKCSP-----------PQRSNPCLAPYSTPCGAPHSEGC 42
QQ QQ +PP PKC+P PQ PC S+ CG P S GC
Sbjct: 4 QQNQQQCQPPPKCPPKCTPKCPPKCPPKCLPQCPAPCSPAVSSCCG-PISGGC 55
>gi|30410043 late cornified envelope 2D [Homo sapiens]
Length = 110
Score = 30.0 bits (66), Expect = 0.42
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 28/91 (30%)
Query: 3 QQKQQSWKPPNV--PKCSP-----------PQRSNPCLAPYSTPCG-------APHSEGC 42
QQ QQ +PP PKC+P PQ PC S+ CG P S GC
Sbjct: 4 QQNQQQCQPPPKCPPKCTPKCPPKCPPKCPPQCPAPCSPAVSSCCGPSSGSCCGPSSGGC 63
Query: 43 HSSS--------QRPEVQKPRRARQKLRCLS 65
SS RP + RR + C S
Sbjct: 64 CSSGGGGCCLSHHRPRLFHRRRHQSPDCCES 94
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 4 QKQQSWKPPNVPKCSPPQRSNPCLA---PYSTPCGAPHSEGCHSSSQRPEVQKPRRARQK 60
Q Q+ PP P+ PPQ N P P G P G S P KP R +
Sbjct: 46 QPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQ 105
Query: 61 LRCLSRGT 68
S+GT
Sbjct: 106 GGNQSQGT 113
Score = 28.9 bits (63), Expect = 0.93
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 11 PPNVPKCSPPQRSNPCLAP---YSTPCGAPHSEGCHSSSQRPEVQKPRRARQK 60
PP P+ PPQ N P P G P EG S S R KP+ Q+
Sbjct: 137 PPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQ 189
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 5 KQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKPRRARQ 59
K Q PP P+ PP NP P + P G P RP +P + +Q
Sbjct: 193 KPQGPPPPGKPQGPPPAGGNP-QQPQAPPAGKPQGPPPPPQGGRP--PRPAQGQQ 244
>gi|32479521 dishevelled 1 [Homo sapiens]
Length = 670
Score = 28.9 bits (63), Expect = 0.93
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 12 PNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSS-SQRPEVQKPRRARQK 60
P P C PP +P + S G+ SEG SS S R + P R +++
Sbjct: 518 PGPPPCFPPAYQDPGFSYGSGSTGSQQSEGSKSSGSTRSSRRAPGREKER 567
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 2 SQQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKP 54
S Q+Q +PP + PP P P+ AP+ ++ Q P+ Q P
Sbjct: 499 SYQQQPQSQPPQLQSSQPPYSQQPSQPPHQ-QSPAPYPSQQSTTQQHPQSQPP 550
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 1 MSQQKQQSWKPPNVPKCSPPQRSNP---CLAPYSTPCGAPHSEGCHSSSQRPEVQK 53
M QQ+QQ++K P PP + + PYST G P + + +P Q+
Sbjct: 1361 MYQQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLPPAQPQPASQQ 1416
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 2 SQQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKP 54
S Q+Q +PP + PP P P+ AP+ ++ Q P+ Q P
Sbjct: 499 SYQQQPQSQPPQLQSSQPPYSQQPSQPPHQ-QSPAPYPSQQSTTQQHPQSQPP 550
>gi|116805330 small conductance calcium-activated potassium
channel protein 3 isoform a [Homo sapiens]
Length = 731
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 3 QQKQQSWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQKP 54
QQ+QQ PP P +P Q P L P P + Q+ + Q+P
Sbjct: 35 QQQQQQQPPPPAPPAAPQQPLGPSLQPQ-----PPQLQQQQQQQQQQQQQQP 81
>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
isoform a precursor [Homo sapiens]
Length = 382
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 8 SWKPPNVPKCSPPQRSNPCLAPYSTPCGAPHSEGCHSSSQRPEVQK 53
S +PP+ PP +++P AP P S G + ++RPE+ +
Sbjct: 253 SQEPPDTTSPEPPDKTSPEPAPQQGSTHTPRSPG-STRTRRPEISQ 297
>gi|30387656 late cornified envelope 1B [Homo sapiens]
Length = 118
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 3 QQKQQSWKPPN-VPKCSP-------PQRSNPCLAPYSTPCGAPHSEGCHSSS 46
Q +QQ PP +PKC P P + P P S+ C C SSS
Sbjct: 5 QNQQQCQPPPKCIPKCPPKCLTPRCPPKCPPKCPPVSSCCSVSSGGCCGSSS 56
>gi|38158011 cell death-inducing DFFA-like effector a isoform 2
[Homo sapiens]
Length = 253
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 1 MSQQKQQSWKP--PNVPKCSPPQRS 23
M +K Q W P +VP CSPP+RS
Sbjct: 134 MILEKGQKWMPGSQHVPTCSPPKRS 158
>gi|4557465 cell death-inducing DFFA-like effector a isoform 1 [Homo
sapiens]
Length = 219
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 1 MSQQKQQSWKP--PNVPKCSPPQRS 23
M +K Q W P +VP CSPP+RS
Sbjct: 100 MILEKGQKWMPGSQHVPTCSPPKRS 124
>gi|50952466 host cell factor C1 regulator 1 (XPO1 dependant)
isoform 2 [Homo sapiens]
Length = 119
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 15 PKCSPPQRSNPCLAPYSTPC 34
P CSPP +P L P +PC
Sbjct: 59 PYCSPPMTFSPALPPLRSPC 78
>gi|8923536 host cell factor C1 regulator 1 (XPO1 dependant)
isoform 1 [Homo sapiens]
Length = 138
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 15 PKCSPPQRSNPCLAPYSTPC 34
P CSPP +P L P +PC
Sbjct: 78 PYCSPPMTFSPALPPLRSPC 97
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,625,800
Number of Sequences: 37866
Number of extensions: 216607
Number of successful extensions: 1122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 203
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.