VPS53 10442

Name: VPS53	Sequence: fasta or formatted (832aa)		NCBI GI: 189491744
Description: vacuolar protein sorting 53 isoform 1		Referenced in: ER, Golgi, and the Secretory Pathway
Other entries for this name: alt prot [670aa] vacuolar protein sorting 53 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.4 53 2 C cysteine 1.8 15 1 D aspartate 4.9 41 2 E glutamate 8.7 72 4 F phenylalanine 4.0 33 1 G glycine 4.2 35 2 H histidine 1.8 15 1 I isoleucine 6.4 53 2 K lysine 7.9 66 2 L leucine 11.3 94 3 M methionine 2.8 23 2 N asparagine 3.1 26 1 P proline 4.9 41 3 Q glutamine 5.8 48 2 R arginine 4.9 41 3 S serine 6.0 50 3 T threonine 6.1 51 3 V valine 6.2 52 2 W tryptophan 0.6 5 1 Y tyrosine 2.2 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 vacuolar protein sorting 53 isoform 1 VPS53 0.798 vacuolar protein sorting 53 isoform 2 LOC100287386 0.058 PREDICTED: similar to vacuolar protein sorting 53 (... LOC100287386 0.058 PREDICTED: hypothetical protein XP_002343642 CCDC150 0.010 coiled-coil domain containing 150 MYH8 0.009 myosin, heavy chain 8, skeletal muscle, perinatal [... MYH1 0.009 myosin, heavy chain 1, skeletal muscle, adult [Homo... TPM2 0.008 tropomyosin 2 (beta) isoform 2 TPM2 0.007 tropomyosin 2 (beta) isoform 1 TPM1 0.007 tropomyosin 1 alpha chain isoform 7 HOOK1 0.007 hook homolog 1 NIN 0.007 ninein isoform 4 NIN 0.007 ninein isoform 5 NIN 0.007 ninein isoform 1 NIN 0.007 ninein isoform 2 CCDC41 0.007 NY-REN-58 antigen CCDC41 0.007 NY-REN-58 antigen CEP110 0.007 centrosomal protein 110kDa KRT1 0.006 keratin 1 MYH13 0.006 myosin, heavy polypeptide 13, skeletal muscle [Homo... CGN 0.006 cingulin GCOM1 0.006 GRINL1A combined protein isoform 8 LUZP2 0.006 leucine zipper protein 2 KIF4A 0.006 kinesin family member 4 SMC4 0.006 SMC4 structural maintenance of chromosomes 4-like 1 ... SMC4 0.006 SMC4 structural maintenance of chromosomes 4-like 1 ... KIF4B 0.006 kinesin family member 4B TPM4 0.006 tropomyosin 4 isoform 1 TPM1 0.006 tropomyosin 1 alpha chain isoform 2 HOMER2 0.006 homer 2 isoform 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.