Guide to the Human Genome
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Name: LOC100287386 Sequence: fasta or formatted (188aa) NCBI GI: 239746043
Description:

PREDICTED: hypothetical protein XP_002343642

Not currently referenced in the text

Other entries for this name:
alt prot {188aa} PREDICTED: similar to vacuolar protein sorting 53 (yeast) (predic...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          7           2
 C cysteine            1.6          3           1
 D aspartate           3.2          6           1
 E glutamate           5.9         11           1
 F phenylalanine       4.8          9           1
 G glycine             8.0         15           1
 H histidine           2.1          4           1
 I isoleucine          5.9         11           1
 K lysine              8.5         16           2
 L leucine            13.8         26           2
 M methionine          3.2          6           1
 N asparagine          1.6          3           1
 P proline             8.5         16           2
 Q glutamine           3.2          6           1
 R arginine            5.9         11           2
 S serine              9.0         17           4
 T threonine           3.7          7           1
 V valine              5.3         10           2
 W tryptophan          1.1          2           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343642 
LOC100287386          0.992   PREDICTED: similar to vacuolar protein sorting 53 (...
VPS53                 0.263   vacuolar protein sorting 53 isoform 1 
GSTCD                 0.014   glutathione S-transferase, C-terminal domain contai...
GSTCD                 0.014   glutathione S-transferase, C-terminal domain contai...
GRID2IP               0.008   glutamate receptor, ionotropic, delta 2 (Grid2) int...
C7orf60               0.008   hypothetical protein LOC154743 
AP2A2                 0.008   adaptor-related protein complex 2, alpha 2 subunit [...
ATRIP                 0.008   ATR interacting protein isoform 2 
ATRIP                 0.008   ATR interacting protein isoform 1 
KLHL36                0.008   kelch-like 36 
GREM2                 0.008   gremlin 2 precursor 
ATF4                  0.006   activating transcription factor 4 
ATF4                  0.006   activating transcription factor 4 
C2orf16               0.006   hypothetical protein LOC84226 
OR1J4                 0.006   olfactory receptor, family 1, subfamily J, member 4 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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