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Search of human proteins with 189027139
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189027139 chromosome 9 open reading frame 61 [Homo sapiens]
(450 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189027139 chromosome 9 open reading frame 61 [Homo sapiens] 901 0.0
gi|189027135 chromosome 9 open reading frame 61 [Homo sapiens] 901 0.0
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 185 6e-47
gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens] 112 9e-25
gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens] 58 2e-08
gi|148833508 notch1 preproprotein [Homo sapiens] 37 0.028
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 37 0.048
gi|203097003 Rho GTPase activating protein 21 [Homo sapiens] 34 0.24
gi|21361749 ubiquitin thioesterase 49 [Homo sapiens] 33 0.40
gi|154816198 transcription elongation factor B polypeptide 3C-li... 33 0.40
gi|156938279 transcription elongation factor B polypeptide 3C [H... 33 0.40
gi|169205253 PREDICTED: hypothetical protein [Homo sapiens] 33 0.53
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 33 0.69
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 33 0.69
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 33 0.69
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 32 0.90
gi|157909822 pragmin [Homo sapiens] 32 1.2
gi|55956788 nucleolin [Homo sapiens] 32 1.5
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 32 1.5
gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens] 31 2.0
gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens] 31 2.0
gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens] 31 2.6
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 31 2.6
gi|28558973 mediator complex subunit 14 [Homo sapiens] 30 3.4
gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens] 30 4.5
gi|32880206 cadherin-like 24 isoform 1 [Homo sapiens] 30 4.5
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 30 5.8
gi|15619006 vasoactive intestinal peptide receptor 1 [Homo sapiens] 30 5.8
gi|45643138 kelch-like 13 [Homo sapiens] 30 5.8
gi|162809334 pregnancy-zone protein [Homo sapiens] 30 5.8
>gi|189027139 chromosome 9 open reading frame 61 [Homo sapiens]
Length = 450
Score = 901 bits (2329), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MILLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAK 60
MILLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAK
Sbjct: 1 MILLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAK 60
Query: 61 CTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCI 120
CTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCI
Sbjct: 61 CTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCI 120
Query: 121 DESQISAEEAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGA 180
DESQISAEEAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGA
Sbjct: 121 DESQISAEEAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGA 180
Query: 181 RIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPN 240
RIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPN
Sbjct: 181 RIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPN 240
Query: 241 IPAEENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTER 300
IPAEENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTER
Sbjct: 241 IPAEENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTER 300
Query: 301 RLDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENI 360
RLDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENI
Sbjct: 301 RLDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENI 360
Query: 361 KSVLKSDEEHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTP 420
KSVLKSDEEHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTP
Sbjct: 361 KSVLKSDEEHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTP 420
Query: 421 AGRPRAERRPRRVEAERPHSLIGVIRETVL 450
AGRPRAERRPRRVEAERPHSLIGVIRETVL
Sbjct: 421 AGRPRAERRPRRVEAERPHSLIGVIRETVL 450
>gi|189027135 chromosome 9 open reading frame 61 [Homo sapiens]
Length = 450
Score = 901 bits (2329), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MILLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAK 60
MILLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAK
Sbjct: 1 MILLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAK 60
Query: 61 CTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCI 120
CTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCI
Sbjct: 61 CTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCI 120
Query: 121 DESQISAEEAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGA 180
DESQISAEEAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGA
Sbjct: 121 DESQISAEEAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGA 180
Query: 181 RIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPN 240
RIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPN
Sbjct: 181 RIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPN 240
Query: 241 IPAEENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTER 300
IPAEENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTER
Sbjct: 241 IPAEENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTER 300
Query: 301 RLDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENI 360
RLDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENI
Sbjct: 301 RLDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENI 360
Query: 361 KSVLKSDEEHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTP 420
KSVLKSDEEHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTP
Sbjct: 361 KSVLKSDEEHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTP 420
Query: 421 AGRPRAERRPRRVEAERPHSLIGVIRETVL 450
AGRPRAERRPRRVEAERPHSLIGVIRETVL
Sbjct: 421 AGRPRAERRPRRVEAERPHSLIGVIRETVL 450
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 185 bits (470), Expect = 6e-47
Identities = 144/456 (31%), Positives = 209/456 (45%), Gaps = 81/456 (17%)
Query: 3 LLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCE-EFQPAKC 61
L++ F+LLS VCV+LNLAG IL CQ AQ V+S+ C L+ ++C CCE + Q + C
Sbjct: 91 LVITFFMLLSAVCVMLNLAGSILSCQNAQLVNSLEGCQLIKFDSVEVCVCCELQHQSSGC 150
Query: 62 TDKENALKLFPVQP-CSAVHLLLKKVLFALCALNALTTTVCLVAAAL--------RYLQI 112
++ LKL P+Q C+AV L LK +LF++CALN L+T VC +A A+ LQ+
Sbjct: 151 SNLGETLKLNPLQENCNAVRLTLKDLLFSVCALNVLSTIVCALATAMCCMQMVSSDVLQM 210
Query: 113 FATRRSCIDESQISAEEAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMN-RRMVGPDV 171
F +RS + D D+F+PP+PPP Y+ Y+CTP +R + D
Sbjct: 211 FLPQRSHPANPTCVTPHGTVLHQTLDFDEFIPPLPPPPYYPPEYTCTPSTEAQRGLHLDF 270
Query: 172 IPLPH--IYGARIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSF--QMSEGSE-------- 219
P P +Y I + P + PPPYEAVV Q Q +S Q++E S
Sbjct: 271 APSPFGTLYDVAINSPGLLYPAELPPPYEAVVGQPPASQVTSIGQQVAESSSGDPNTSAG 330
Query: 220 -AAVIPLDLGCTQVTQDGDIPNIPAEENASTSTPSSTLVRPIRSRRALPPLR-------- 270
+ +P D V++ P S+ +P + P S ALPP
Sbjct: 331 FSTPVPADSTSLLVSEGTATP-------GSSPSPDGPVGAPAPSEPALPPGHVSPEDPGM 383
Query: 271 -----------TRSKSDPVL-------HPSEERAAPVLSCEA----ATQTERRLDLAAVT 308
+RS SDP L S R + EA A + +A
Sbjct: 384 GSQVQPGPGRVSRSTSDPTLCTSSMAGDASSHRPSCSQDLEAGLSEAVPGSASMSRSATA 443
Query: 309 LRRGLRSRA--------------------SRCRPRSLIDYKSYMDTKLLVARFLEQSSCT 348
R S A S+ RPRSL+D K+Y D ++LVA+FLE S C
Sbjct: 444 ACRAQLSPAGDPDTWKTDQRPTPEPFPATSKERPRSLVDSKAYADARVLVAKFLEHSHCA 503
Query: 349 MTPDIHELVENIKSVLKSDEEHMEEAITSASFLEQI 384
+ + +V ++ + ++E EEA+ A L+Q+
Sbjct: 504 LPTEAQHMVGAMRLAVTNEERLEEEAVFGADVLDQV 539
>gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]
Length = 668
Score = 112 bits (279), Expect = 9e-25
Identities = 81/293 (27%), Positives = 130/293 (44%), Gaps = 43/293 (14%)
Query: 3 LLVNLFVLLSVVCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQPAK-C 61
L+++ F LLSV+CV+L++AG +L C+ AQ +C L EGK+C CC + C
Sbjct: 93 LVISFFSLLSVLCVMLSMAGSVLSCKNAQLARDFQQCSL----EGKVCVCCPSVPLLRPC 148
Query: 62 TDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATR--RSC 119
+ LK+ P C LK +LF++C L +C ++A + +QIF+ +
Sbjct: 149 PESGQELKVAPNSTCDEARGALKNLLFSVCGLTICAAIICTLSAIVCCIQIFSLDLVHTL 208
Query: 120 IDESQISAEEAEDHGRIPDP----------DDFVPPVPPPSYFATFYSCTPRMNRRMVGP 169
E +S P P ++FVPPVPPP Y+ Y+C+ + + +
Sbjct: 209 APERSVSGPLGPLGCTSPPPAPLLHTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSI-- 266
Query: 170 DVIPLPHIYGARIKGVEVFCPLDPPPPYEAVVSQMDQEQGSSF--QMSEGS-------EA 220
Y + P D PP YEAV+ Q + F Q+ +GS
Sbjct: 267 -------TYNGSMDSPVPLYPTDCPPSYEAVMGLRGDSQATLFDPQLHDGSCICERVASI 319
Query: 221 AVIPLDLGCTQVTQDGDIP--NIPAEEN------ASTSTPSSTLVRPIRSRRA 265
+ +D G ++ GD+P + P+E++ S + L R I+ RA
Sbjct: 320 VDVSMDSGSLVLSAIGDLPGGSSPSEDSCLLELQGSVRSVDYVLFRSIQRSRA 372
Score = 30.8 bits (68), Expect = 2.6
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 407 LHLQSCGDLHTFTPAGRPRAERRPRRVEAERPHSLI--GVIRETVL 450
LHL+SCGDL + + R + RR R RPHSL G RET L
Sbjct: 625 LHLRSCGDLSSSSSLRRLLSGRRLER--GTRPHSLSLNGGSRETGL 668
>gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens]
Length = 572
Score = 58.2 bits (139), Expect = 2e-08
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 38/209 (18%)
Query: 86 VLFALCALNALTTTVCLVAAALRYLQIFATR--RSCIDESQISAEEAEDHGRIPDP---- 139
+LF++C L +C ++A + +QIF+ + E +S P P
Sbjct: 77 LLFSVCGLTICAAIICTLSAIVCCIQIFSLDLVHTLAPERSVSGPLGPLGCTSPPPAPLL 136
Query: 140 ------DDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDP 193
++FVPPVPPP Y+ Y+C+ + + + Y + P D
Sbjct: 137 HTMLDLEEFVPPVPPPPYYPPEYTCSSETDAQSI---------TYNGSMDSPVPLYPTDC 187
Query: 194 PPPYEAVVSQMDQEQGSSF--QMSEGS-------EAAVIPLDLGCTQVTQDGDIP--NIP 242
PP YEAV+ Q + F Q+ +GS + +D G ++ GD+P + P
Sbjct: 188 PPSYEAVMGLRGDSQATLFDPQLHDGSCICERVASIVDVSMDSGSLVLSAIGDLPGGSSP 247
Query: 243 AEEN------ASTSTPSSTLVRPIRSRRA 265
+E++ S + L R I+ RA
Sbjct: 248 SEDSCLLELQGSVRSVDYVLFRSIQRSRA 276
Score = 30.8 bits (68), Expect = 2.6
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 407 LHLQSCGDLHTFTPAGRPRAERRPRRVEAERPHSLI--GVIRETVL 450
LHL+SCGDL + + R + RR R RPHSL G RET L
Sbjct: 529 LHLRSCGDLSSSSSLRRLLSGRRLER--GTRPHSLSLNGGSRETGL 572
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 37.4 bits (85), Expect = 0.028
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Query: 190 PLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPAEENAST 249
P PP P+ V S G SF E S+A V PL V +P E A
Sbjct: 2411 PPPPPQPHLGVSSAASGHLGRSFLSGEPSQADVQPLGPSSLAVHTI-----LPQESPALP 2465
Query: 250 STPSSTLVRPIRSRRALPPLRTRSKSDPVLH-PSEERAAP 288
++ S+LV P+ + + L P S S PV + PS + P
Sbjct: 2466 TSLPSSLVPPVTAAQFLTPPSQHSYSSPVDNTPSHQLQVP 2505
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 36.6 bits (83), Expect = 0.048
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 139 PDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPPPP 196
PDDF+PP PPP P + PD +P P A I G E+ P PPPP
Sbjct: 550 PDDFLPPPPPPPPLDDPELPPPPPDFMEPPPDFVPPPPPSYAGIAGSEL--PPPPPPP 605
>gi|203097003 Rho GTPase activating protein 21 [Homo sapiens]
Length = 1958
Score = 34.3 bits (77), Expect = 0.24
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 10/120 (8%)
Query: 184 GVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPA 243
G + C L E + +M++ + SS G A IP T + D DI +IPA
Sbjct: 766 GSDTTCWLPNDARREVHIKRMEERKASSTS-PPGDSLASIPFIDEPTSPSIDHDIAHIPA 824
Query: 244 EENASTST---PSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTER 300
S ST PS V P + A PL R S H E P L + ++TER
Sbjct: 825 SAVISASTSQVPSIATVPPCLTTSA--PLIRRQLS----HDHESVGPPSLDAQPNSKTER 878
>gi|21361749 ubiquitin thioesterase 49 [Homo sapiens]
Length = 640
Score = 33.5 bits (75), Expect = 0.40
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 19/160 (11%)
Query: 274 KSDPVLHPSEERAAPVLSCEAATQTERRLDLAAVTLRR---------GLRSRASRCRPRS 324
KS +L + A P S AA T RR+ A + LRR GLR+ + C S
Sbjct: 207 KSARLLLHTPRDAGPAASRPAALPTSRRVPAATLKLRRQPAMAPGVTGLRNLGNTCYMNS 266
Query: 325 LIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENIKSVL-------KSDEEHMEEAITS 377
++ S++ L+ S T + N K+ L + E +
Sbjct: 267 ILQVLSHLQKFRECFLNLDPSK---TEHLFPKATNGKTQLSGKPTNSSATELSLRNDRAE 323
Query: 378 ASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHT 417
A E + S SR+ +L ++P H+ C +LHT
Sbjct: 324 ACEREGFCWNGRASISRSLELIQNKEPSSKHISLCRELHT 363
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 33.5 bits (75), Expect = 0.40
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 369 EHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTPAGRPRAER 428
E ++E + F E AP PS S H+ +RR P H +P+ PRAER
Sbjct: 101 EALQEREKAWGFPENATAPRSPSHSPEHRRTARRTP-----PGQQRPHPRSPSREPRAER 155
Query: 429 -RPRRVEAER-PH 439
RPR A+ PH
Sbjct: 156 KRPRMAPADSGPH 168
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 33.5 bits (75), Expect = 0.40
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 369 EHMEEAITSASFLEQIMAPLQPSTSRAHKLPSRRQPGLLHLQSCGDLHTFTPAGRPRAER 428
E ++E + F E AP PS S H+ +RR P H +P+ PRAER
Sbjct: 101 EALQEREKAWGFPENATAPRSPSHSPEHRRTARRTP-----PGQQRPHPRSPSREPRAER 155
Query: 429 -RPRRVEAER-PH 439
RPR A+ PH
Sbjct: 156 KRPRMAPADSGPH 168
>gi|169205253 PREDICTED: hypothetical protein [Homo sapiens]
Length = 3859
Score = 33.1 bits (74), Expect = 0.53
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 132 DHGRIPDPDDFVPPVPPPSYFATFYSCTPR--MNRRMVGPDV--IPLPHIYGARIKGVEV 187
D+ +PDP P VP PS F+ + TP ++ + D +P+ + G + +
Sbjct: 2863 DNPGVPDPIRAFPVVPKPSTFSPVVTSTPADWIDVIVTPADCADVPVNPVNGPVVPDLSG 2922
Query: 188 FCPLDPPPPYEAVV 201
CP+ P PP + +V
Sbjct: 2923 DCPVVPVPPTDDIV 2936
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 32.7 bits (73), Expect = 0.69
Identities = 45/171 (26%), Positives = 60/171 (35%), Gaps = 40/171 (23%)
Query: 136 IPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPPP 195
IP P DF+PP PP ++ A P P PH G R L PP
Sbjct: 208 IPTPPDFIPPAPPLAFLA-----PPPPPVPAPAPPAPASPHTVGTR---------LFPP- 252
Query: 196 PYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPAEENAST--STPS 253
V++ + + + +E + A+ P PAE S P
Sbjct: 253 ---GGVTKWKSDVALNGRQAEATRASP----------------PRSPAEPKGSALGPNPE 293
Query: 254 STLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTERRLDL 304
L P RS + PP R+ S PV E + AP A + RL L
Sbjct: 294 PHLTFP-RSFKVPPPTPVRTSSIPV---QEAQEAPRKEEGATKKAPSRLPL 340
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 32.7 bits (73), Expect = 0.69
Identities = 45/171 (26%), Positives = 60/171 (35%), Gaps = 40/171 (23%)
Query: 136 IPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPPP 195
IP P DF+PP PP ++ A P P PH G R L PP
Sbjct: 208 IPTPPDFIPPAPPLAFLA-----PPPPPVPAPAPPAPASPHTVGTR---------LFPP- 252
Query: 196 PYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPAEENAST--STPS 253
V++ + + + +E + A+ P PAE S P
Sbjct: 253 ---GGVTKWKSDVALNGRQAEATRASP----------------PRSPAEPKGSALGPNPE 293
Query: 254 STLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTERRLDL 304
L P RS + PP R+ S PV E + AP A + RL L
Sbjct: 294 PHLTFP-RSFKVPPPTPVRTSSIPV---QEAQEAPRKEEGATKKAPSRLPL 340
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 32.7 bits (73), Expect = 0.69
Identities = 45/171 (26%), Positives = 60/171 (35%), Gaps = 40/171 (23%)
Query: 136 IPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPPP 195
IP P DF+PP PP ++ A P P PH G R L PP
Sbjct: 208 IPTPPDFIPPAPPLAFLA-----PPPPPVPAPAPPAPASPHTVGTR---------LFPP- 252
Query: 196 PYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPAEENAST--STPS 253
V++ + + + +E + A+ P PAE S P
Sbjct: 253 ---GGVTKWKSDVALNGRQAEATRASP----------------PRSPAEPKGSALGPNPE 293
Query: 254 STLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQTERRLDL 304
L P RS + PP R+ S PV E + AP A + RL L
Sbjct: 294 PHLTFP-RSFKVPPPTPVRTSSIPV---QEAQEAPRKEEGATKKAPSRLPL 340
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.3 bits (72), Expect = 0.90
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 185 VEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPAE 244
V +F P PPP + ++ + Q SF + + V PL LG ++ + P PA
Sbjct: 711 VGLFPPPPPPPQVTSAIATLQQAAAMSF-CPQVARPLVGPLALGSPRLVRRP--PPGPAP 767
Query: 245 ENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLH-PSEERAAPVLSCEAATQTERRLD 303
AS P P S P ++ P P+ A P L ++ R L
Sbjct: 768 AAASPGPP------PPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLS 821
Query: 304 LAAVTLRRGLRSRASRCRPRS 324
+ +L G A+ RP S
Sbjct: 822 ASQPSLPHGAPGPAASTRPAS 842
>gi|157909822 pragmin [Homo sapiens]
Length = 1402
Score = 32.0 bits (71), Expect = 1.2
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 184 GVEVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPA 243
G+E F P PPPP + +M++ ++S+GS ++ P G G ++ +
Sbjct: 705 GIETFSP-PPPPPKSRHLLKMNKSSSDLEKVSQGSAESLSPSFRGVHVSFTTGSTDSLAS 763
Query: 244 E-ENASTSTPSSTLVR-PIRS-RRALPPLRTRSKSDPVLHPSEERAAPVL 290
+ S PSS L P S ++ P+ S S + PS + P L
Sbjct: 764 DSRTCSDGGPSSELAHSPTNSGKKLFAPVPFPSGSTEDVSPSGPQQPPPL 813
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 31.6 bits (70), Expect = 1.5
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 194 PPPYEAVVSQMDQEQGSSFQMSEGSEAAVIPLDLGCTQVTQDGDIPNIPAEENASTSTPS 253
PPP E D+E + E VIP G + + + +TP+
Sbjct: 19 PPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKKAAATSAKKVVVSPTKKVAVATPA 78
Query: 254 -STLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAP 288
V P + A P +T + + V P ++ A P
Sbjct: 79 KKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATP 114
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 31.6 bits (70), Expect = 1.5
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 209 GSSFQMSEGSEAAVIP--LDLGCTQVTQDGDIPNIPAEENASTSTPSSTLVRPIRSRRAL 266
GS S ++ + P L T +T G N +STP +T + P+ + A
Sbjct: 4665 GSMATPSSSTQTSGTPPSLTTTATTITATGSTTN-------PSSTPGTTPITPVLTSTAT 4717
Query: 267 PPLRTRSKSDPVLHPSEERAAPVLSCEAATQT 298
P T SK+ P PVL+ A T
Sbjct: 4718 TPAATSSKATSSSSPRTATTLPVLTSTATKST 4749
Score = 29.3 bits (64), Expect = 7.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 248 STSTPSSTLVRP----IRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAATQT 298
ST+TP+STL + + A P T SK+ P P A P L A T T
Sbjct: 1925 STATPTSTLRTAPPPKVLTTTATTPTVTSSKATPSSSPGTATALPALRSTATTPT 1979
>gi|155030236 ribonuclease III, nuclear isoform 2 [Homo sapiens]
Length = 1337
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 144 PPVP----PPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPPPP 196
PPV PPS +T +S +P N PD +P P +G CP+ PP P
Sbjct: 47 PPVQYQYEPPSAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFP 103
>gi|155030234 ribonuclease III, nuclear isoform 1 [Homo sapiens]
Length = 1374
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 144 PPVP----PPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPPPP 196
PPV PPS +T +S +P N PD +P P +G CP+ PP P
Sbjct: 47 PPVQYQYEPPSAPSTTFSNSPAPNFLPPRPDFVPFPPPMPPSAQGPLPPCPIRPPFP 103
>gi|21327710 nucleosome assembly protein 1-like 3 [Homo sapiens]
Length = 506
Score = 30.8 bits (68), Expect = 2.6
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 237 DIPNIPAEENASTSTPSSTLVRPIRSRRALPPLRTRSKSDPVLHPSEERAAPVLSCEAAT 296
+IP + AEE A + + +P ++ K P ++ RAA V
Sbjct: 226 EIPEVKAEEKADSKDCMEATPEVKEDPKEVPQVKADDKEQPKATEAKARAA-VRETHKRV 284
Query: 297 QTERRLDLAAVTLRRGLRSRASRCRPRSLIDY 328
ER D +V L+R + + R P+ + DY
Sbjct: 285 PEERLQD--SVDLKRARKGKPKREDPKGIPDY 314
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 30.8 bits (68), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 236 GDIPNIPAEENASTSTPSSTLVRPIRSRRALPPL 269
G P PA+E + +P T RP+ ++R LPPL
Sbjct: 969 GPAPEAPAQEGPGSGSPRDT--RPLSTQRPLPPL 1000
>gi|28558973 mediator complex subunit 14 [Homo sapiens]
Length = 1454
Score = 30.4 bits (67), Expect = 3.4
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 387 PLQPSTSRAHKLPS---------RRQPGLLHLQSCGDLH-TFTPAGRPRAERRPRRVEAE 436
P QP TS A+ L S + P ++H QS G+LH +P+G RA V
Sbjct: 1010 PKQPGTSGAYPLTSPPTSYHSTVNQSPSMMHTQSPGNLHAASSPSGALRAPSPASFVPTP 1069
Query: 437 RPHS 440
P S
Sbjct: 1070 PPSS 1073
>gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens]
Length = 781
Score = 30.0 bits (66), Expect = 4.5
Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 21/181 (11%)
Query: 60 KCTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQ--IFATRR 117
+C + +P SA L +L + + AL V L A R Q +
Sbjct: 578 RCQPDGSVASCWPEAHLSAAGLSTGALLAIITCVGALLALVVLFVALRRQKQEALMVLEE 637
Query: 118 SCIDESQISAE---------EAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVG 168
+ E+ I+ + EA D + +PD PP P P R++R+
Sbjct: 638 EDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAPGPPARRDVLP-RARVSRQPRP 696
Query: 169 PDVIPLPHIYGARIKGVEVFCPLDP-PPPYEAVVSQMDQEQGSS----FQMSEGSEAAVI 223
P + + R++ + DP PPY++V + +GSS + GSEA
Sbjct: 697 PGPADVAQLLALRLREADE----DPGVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGA 752
Query: 224 P 224
P
Sbjct: 753 P 753
>gi|32880206 cadherin-like 24 isoform 1 [Homo sapiens]
Length = 819
Score = 30.0 bits (66), Expect = 4.5
Identities = 42/181 (23%), Positives = 68/181 (37%), Gaps = 21/181 (11%)
Query: 60 KCTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQ--IFATRR 117
+C + +P SA L +L + + AL V L A R Q +
Sbjct: 616 RCQPDGSVASCWPEAHLSAAGLSTGALLAIITCVGALLALVVLFVALRRQKQEALMVLEE 675
Query: 118 SCIDESQISAE---------EAEDHGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVG 168
+ E+ I+ + EA D + +PD PP P P R++R+
Sbjct: 676 EDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAPGPPARRDVLP-RARVSRQPRP 734
Query: 169 PDVIPLPHIYGARIKGVEVFCPLDP-PPPYEAVVSQMDQEQGSS----FQMSEGSEAAVI 223
P + + R++ + DP PPY++V + +GSS + GSEA
Sbjct: 735 PGPADVAQLLALRLREADE----DPGVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGA 790
Query: 224 P 224
P
Sbjct: 791 P 791
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 29.6 bits (65), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 186 EVFCPLDPPPPYEAVVSQMDQEQGSSFQMSEGSEAAVIP 224
++ C L PPPP + D++Q S +SE E ++P
Sbjct: 150 DIDCKLMPPPPPPPGPMKKDKDQDSITGVSENGEGIILP 188
>gi|15619006 vasoactive intestinal peptide receptor 1 [Homo
sapiens]
Length = 457
Score = 29.6 bits (65), Expect = 5.8
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 14 VCVLLNLAGFILGCQGAQFVSSVPRCDLVDLGEGKICFCCEEFQ----PAKCTDKENALK 69
+CVL + LG G Q CD V + E + C EE Q C+ + L
Sbjct: 12 LCVLAGALAWALGPAGGQAARLQEECDYVQMIEVQHKQCLEEAQLENETIGCSKMWDNLT 71
Query: 70 LFPVQPCSAVHLLLKKVLFAL 90
+P P V +L ++F L
Sbjct: 72 CWPATPRGQVVVLACPLIFKL 92
>gi|45643138 kelch-like 13 [Homo sapiens]
Length = 655
Score = 29.6 bits (65), Expect = 5.8
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 291 SCEAATQTERRLDLAAVTLRRGLRSRASRCRPRSLIDYKSYMD----TKLLVARFLEQSS 346
+C E R+D AA ++ R P+ LI+Y +D V LE S+
Sbjct: 261 TCRWLRLEEPRMDFAAKLMKN---IRFPLMTPQELINYVQTVDFMRTDNTCVNLLLEASN 317
Query: 347 CTMTPDIHELVENIKSVLKSDEEHMEEAITSASFLEQ---IMAPLQPSTSRAHKLPS 400
M P + ++++ ++ ++SD H+ +T L Q + L+ +AH+ S
Sbjct: 318 YQMMPYMQPVMQSDRTAIRSDTTHL---VTLGGVLRQQLVVSKELRMYDEKAHEWKS 371
>gi|162809334 pregnancy-zone protein [Homo sapiens]
Length = 1482
Score = 29.6 bits (65), Expect = 5.8
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 44 LGEGKICFCCEEFQPAKCTDKENALKLFPVQ--PCSAVHLLLKKVLFALCALNALTTTVC 101
L +G++ E+F+ C + L P Q P S HL + +LCAL A+ +V
Sbjct: 542 LPDGEVVGDSEKFEIENCLANKVDLSFSPAQSPPASHAHLQVAAAPQSLCALRAVDQSVL 601
Query: 102 LV 103
L+
Sbjct: 602 LM 603
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,838,745
Number of Sequences: 37866
Number of extensions: 935622
Number of successful extensions: 3660
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 3592
Number of HSP's gapped (non-prelim): 91
length of query: 450
length of database: 18,247,518
effective HSP length: 106
effective length of query: 344
effective length of database: 14,233,722
effective search space: 4896400368
effective search space used: 4896400368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.