Guide to the Human Genome
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Name: FAM189A2 Sequence: fasta or formatted (450aa) NCBI GI: 189027139
Description:

chromosome 9 open reading frame 61

Not currently referenced in the text

Other entries for this name:
alt mRNA {450aa} chromosome 9 open reading frame 61
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         37           3
 C cysteine            4.0         18           2
 D aspartate           4.7         21           2
 E glutamate           6.9         31           2
 F phenylalanine       3.6         16           1
 G glycine             4.0         18           1
 H histidine           2.2         10           1
 I isoleucine          4.7         21           1
 K lysine              2.9         13           2
 L leucine            11.3         51           3
 M methionine          2.0          9           1
 N asparagine          1.8          8           1
 P proline             8.9         40           4
 Q glutamine           4.0         18           1
 R arginine            8.2         37           2
 S serine              8.4         38           2
 T threonine           5.3         24           3
 V valine              7.3         33           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 9 open reading frame 61 
FAM189A2              1.000   chromosome 9 open reading frame 61 
FAM189A1              0.183   hypothetical protein LOC23359 
FAM189B               0.099   hypothetical protein LOC10712 isoform a 
FAM189B               0.038   hypothetical protein LOC10712 isoform b 
NOTCH1                0.014   notch1 preproprotein 
APBB1IP               0.014   amyloid beta (A4) precursor protein-binding, family ...
ARHGAP21              0.010   Rho GTPase activating protein 21 
USP49                 0.009   ubiquitin thioesterase 49 
TCEB3CL               0.009   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.009   transcription elongation factor B polypeptide 3C [H...
LOC647546             0.009   PREDICTED: hypothetical protein 
C6orf132              0.009   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.009   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.009   PREDICTED: hypothetical protein LOC647024 
HCN2                  0.008   hyperpolarization activated cyclic nucleotide-gated...
PRAGMIN               0.008   pragmin 
NCL                   0.008   nucleolin 
MUC5B                 0.008   mucin 5, subtype B, tracheobronchial 
RNASEN                0.007   ribonuclease III, nuclear isoform 2 
RNASEN                0.007   ribonuclease III, nuclear isoform 1 
NAP1L3                0.007   nucleosome assembly protein 1-like 3 
PLCH2                 0.007   phospholipase C, eta 2 
MED14                 0.006   mediator complex subunit 14 
CDH24                 0.006   cadherin-like 24 isoform 2 
CDH24                 0.006   cadherin-like 24 isoform 1 
TAF1                  0.006   TBP-associated factor 1 isoform 1 
VIPR1                 0.006   vasoactive intestinal peptide receptor 1 
KLHL13                0.006   kelch-like 13 
PZP                   0.006   pregnancy-zone protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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