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Search of human proteins with 188219622
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188219622 hypothetical protein LOC340277 isoform 3 [Homo
sapiens]
(204 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188219622 hypothetical protein LOC340277 isoform 3 [Homo sapi... 431 e-121
gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo sapi... 396 e-111
gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo sapi... 378 e-105
gi|242117996 hypothetical protein LOC392307 [Homo sapiens] 50 1e-06
gi|134031945 SCO-spondin [Homo sapiens] 34 0.075
gi|21264602 laminin alpha 5 [Homo sapiens] 33 0.22
gi|24308065 netrin 5 [Homo sapiens] 33 0.22
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 32 0.37
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 32 0.49
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 31 0.64
gi|114431236 zinc finger protein 462 [Homo sapiens] 31 0.64
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 30 1.1
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 30 1.1
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 30 1.1
gi|40807489 egf-like module containing, mucin-like, hormone rece... 30 1.4
gi|126032338 ryanodine receptor 3 [Homo sapiens] 30 1.9
gi|216548193 RAD54-like protein [Homo sapiens] 29 2.4
gi|216548186 RAD54-like protein [Homo sapiens] 29 2.4
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho... 29 2.4
gi|21717822 WAP four-disulfide core domain 5 precursor [Homo sap... 29 2.4
gi|32699015 zinc finger protein 454 [Homo sapiens] 29 2.4
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 29 3.2
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 29 3.2
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 29 3.2
gi|134244285 Notch homolog 3 [Homo sapiens] 29 3.2
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 29 3.2
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 29 3.2
gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens] 29 3.2
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 28 4.1
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 28 4.1
>gi|188219622 hypothetical protein LOC340277 isoform 3 [Homo
sapiens]
Length = 204
Score = 431 bits (1108), Expect = e-121
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MERLTLPLGGAAAVDEYLEYRRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNG 60
MERLTLPLGGAAAVDEYLEYRRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNG
Sbjct: 1 MERLTLPLGGAAAVDEYLEYRRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNG 60
Query: 61 SQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQ 120
SQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQ
Sbjct: 61 SQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQ 120
Query: 121 EKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQ 180
EKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQ
Sbjct: 121 EKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQ 180
Query: 181 ERMKMEKAAKWKGKAPLPSATKPS 204
ERMKMEKAAKWKGKAPLPSATKPS
Sbjct: 181 ERMKMEKAAKWKGKAPLPSATKPS 204
>gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo
sapiens]
Length = 262
Score = 396 bits (1018), Expect = e-111
Identities = 202/262 (77%), Positives = 203/262 (77%), Gaps = 58/262 (22%)
Query: 1 MERLTLPLGGAAAVDE---------------------YLEYRR----------------- 22
MERLTLPLGGAAAVDE Y EY+R
Sbjct: 1 MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS 60
Query: 23 --------------------YKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 62
YKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ
Sbjct: 61 PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 120
Query: 63 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 122
PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK
Sbjct: 121 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 180
Query: 123 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER 182
PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER
Sbjct: 181 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER 240
Query: 183 MKMEKAAKWKGKAPLPSATKPS 204
MKMEKAAKWKGKAPLPSATKPS
Sbjct: 241 MKMEKAAKWKGKAPLPSATKPS 262
>gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo
sapiens]
Length = 298
Score = 378 bits (971), Expect = e-105
Identities = 202/298 (67%), Positives = 203/298 (68%), Gaps = 94/298 (31%)
Query: 1 MERLTLPLGGAAAVDE---------------------YLEYRR----------------- 22
MERLTLPLGGAAAVDE Y EY+R
Sbjct: 1 MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS 60
Query: 23 --------------------YKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 62
YKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ
Sbjct: 61 PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 120
Query: 63 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 122
PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK
Sbjct: 121 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 180
Query: 123 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGI---------------------------- 154
PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGI
Sbjct: 181 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIGVPSVEFLESPITAVDSPFLKAFQASSS 240
Query: 155 --------VGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS 204
VGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS
Sbjct: 241 SSPETLTDVGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS 298
>gi|242117996 hypothetical protein LOC392307 [Homo sapiens]
Length = 402
Score = 50.4 bits (119), Expect = 1e-06
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 39 IDLPCQVTGCQCRAYLYVPLNGSQP-----------------IRCRCKHFADQHSAAPGF 81
I +PC+V+ C+C + ++P + +CRCKH ++H+A
Sbjct: 286 ISVPCKVSQCRCFMFCFIPSRPEEVGEFWLKRRATFDPKAWRAQCRCKHSHEEHAATGPH 345
Query: 82 TCNTCSKCSG-FHSCFTC-ACGQPAYAHDTVVETKQERLAQEKPVGQD 127
C C G F S F C AC + H+T +T++ R +P G D
Sbjct: 346 PCRHHGCCCGCFESNFLCAACDRRWEEHETFFDTQKTRQRGGRPRGTD 393
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 34.3 bits (77), Expect = 0.075
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 37 CPIDLPCQVTGCQCRAYLYVPLNGSQPI-RCRCKHFADQHSAAPGF----TCNTCSKCSG 91
C D CQ GC+C G PI C C A HS APG CN CS +G
Sbjct: 4088 CQDDQVCQ-KGCRCPKGSLEQDGGCVPIGHCDCTD-AQGHSWAPGSQHQDACNNCSCQAG 4145
Query: 92 FHSCFTCACGQPAY 105
SC C P +
Sbjct: 4146 QLSCTAQPCPPPTH 4159
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 43 CQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCS----GFHSCFTC 98
CQ C R L L G+ + CRC+ PG+T C +CS GF SC C
Sbjct: 629 CQACTCDPRGALD-QLCGAGGL-CRCR---------PGYTGTACQECSPGFHGFPSCVPC 677
Query: 99 ACGQPAYAH 107
C H
Sbjct: 678 HCSAEGSLH 686
>gi|24308065 netrin 5 [Homo sapiens]
Length = 489
Score = 32.7 bits (73), Expect = 0.22
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 48 CQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGF-----------HSCF 96
CQC + ++P RC C+H H+ PG C +C H C
Sbjct: 157 CQCHGHAARCAARARPPRCHCRH----HTTGPG--CESCRPSHRDWPWRPATPRHPHPCL 210
Query: 97 TCACGQPA 104
C+C Q A
Sbjct: 211 PCSCNQHA 218
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 32.0 bits (71), Expect = 0.37
Identities = 26/99 (26%), Positives = 29/99 (29%), Gaps = 32/99 (32%)
Query: 34 PQQCPIDLPCQVTG----CQCRAYLYVPL--------------NGSQPIRCR-------- 67
PQQCP C C C + P +G QP C
Sbjct: 1047 PQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCACHPSRARGPT 1106
Query: 68 CKHFADQHSAAPGFTCNTCSKCSGFH------SCFTCAC 100
C F Q GF TCS+C H C C C
Sbjct: 1107 CNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDC 1145
Score = 29.6 bits (65), Expect = 1.9
Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 19/106 (17%)
Query: 9 GGAAAVDEYLEYRRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQPIRC-- 66
G AAA++ + RY+ H+ L +P + C +Y NG+ P +C
Sbjct: 733 GDAAALERQATFERYQCHEEGL--VPSKTSPSEACAPLLISLSTLIY---NGALPCQCNP 787
Query: 67 ------RCKHFADQHSAAPGFTCNTCSKCS------GFHSCFTCAC 100
C Q PG C C+ G C C C
Sbjct: 788 QGSLSSECNPHGGQCLCKPGVVGRRCDLCAPGYYGFGPTGCQACQC 833
Score = 28.1 bits (61), Expect = 5.4
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 48 CQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKC-------SGFHSCFTCAC 100
C C P P +C C + Q P +C +C + H C CAC
Sbjct: 1038 CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCAC 1097
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 31.6 bits (70), Expect = 0.49
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 37 CPI-DLPCQVTGCQCRAYLYVP----------LNG-----SQPIRCRCKHFADQHSAAPG 80
CPI D P Q TG RA + P L G S C D+ G
Sbjct: 2115 CPIADCPAQPTGAFIRAIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRILCRQG 2174
Query: 81 FTCNT-CSKCSGFHSCFTCACGQPAY 105
C T CSKC G+ SCF C+ + Y
Sbjct: 2175 LGCGTTCSKC-GWASCFNCSFPEAHY 2199
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 31.2 bits (69), Expect = 0.64
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 59 NGSQPIRCRCKHFADQHSAAPGFTCNTCSKC----SGFHSCFTCACGQPAYAHD 108
NG QP +C CK G+T C +C + +C +C C A D
Sbjct: 420 NGKQPGQCPCKE---------GYTGEKCDRCQLGYKDYPTCVSCGCNPVGSASD 464
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 31.2 bits (69), Expect = 0.64
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 69 KHFADQHSAAPGFTCNTCSKCSGFHSCFT 97
+H+ D+H F C CS +GF S FT
Sbjct: 2208 RHYRDKHGGKKLFKCKDCSFYTGFKSAFT 2236
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 30.4 bits (67), Expect = 1.1
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 41 LPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHS-----C 95
+PCQ CQ L++ + + C CK G+ C+ C GFHS C
Sbjct: 378 MPCQPCDCQSAGSLHLQCDDTG--TCACK------PTVTGWKCDRC--LPGFHSLSEGGC 427
Query: 96 FTCACGQPAYAHDT 109
C C PA + DT
Sbjct: 428 RPCTC-NPAGSLDT 440
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 43 CQVTGCQCRAYLY----VPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCS 90
C C+C A + V +NG HF QH +PG C CS+CS
Sbjct: 688 CNRMSCRCGAQMCYLCRVSINGYD-------HFC-QHPRSPGAPCQECSRCS 731
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 43 CQVTGCQCRAYLY----VPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCS 90
C C+C A + V +NG HF QH +PG C CS+CS
Sbjct: 745 CNRMSCRCGAQMCYLCRVSINGYD-------HFC-QHPRSPGAPCQECSRCS 788
>gi|40807489 egf-like module containing, mucin-like, hormone
receptor-like sequence 1 [Homo sapiens]
Length = 886
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 14/93 (15%)
Query: 17 YLEYRRYKQHKTDLEAIPQQCPIDLPCQVTG----CQCRAYLYVPLNG-----SQPIRCR 67
+L ++ K D++ + CPI+ C T C C + P NG Q + CR
Sbjct: 209 HLSFQGLKASCEDIDECTEMCPINSTCTNTPGSYFCTCHPG-FAPSNGQLNFTDQGVECR 267
Query: 68 CKHFADQHSAAPGFTCNTCSKCSGFHSCFTCAC 100
D+ P TC S C+ ++C C
Sbjct: 268 ---DIDECRQDPS-TCGPNSICTNALGSYSCGC 296
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 29.6 bits (65), Expect = 1.9
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 112 ETKQERLAQEKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDD 171
E ++E Q P+ Q I Y + LT S L + + S ++ S Q +ED
Sbjct: 3541 EEEEETEKQPDPLHQIILYFSRNALTERSKLEDDPLYTSYSSMMAKSCQSGEDEEEDEDK 3600
Query: 172 MAFFERRYQERMK 184
FE + E+ K
Sbjct: 3601 EKTFEEKEMEKQK 3613
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 48 CQCRAYLYVPLNGSQPIRCRCKHFADQHS-AAPGFTCNTCSKCSG 91
C+ R YLYV L+G+ I+ R K +S ++P F SK G
Sbjct: 533 CRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGG 577
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 29.3 bits (64), Expect = 2.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 48 CQCRAYLYVPLNGSQPIRCRCKHFADQHS-AAPGFTCNTCSKCSG 91
C+ R YLYV L+G+ I+ R K +S ++P F SK G
Sbjct: 533 CRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGG 577
>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 3526
Score = 29.3 bits (64), Expect = 2.4
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 99 ACGQPAYAHDTVVETKQERLAQEKPVGQDIPYAAMGGLT-----GFSSLAEGYMRLDDSG 153
A G PA D +VE+ + AQ++P + A + GL S +G +
Sbjct: 2445 ASGNPAIVQDAIVESSEGEAAQQEPEHGEDTIAKVKGLVKPPLKRSRSAPDGGDEENQEQ 2504
Query: 154 IVGTSSQVSSLRRPEEDDMAFFERRYQERMKME 186
+ ++ SS+ E+ D A R +E K++
Sbjct: 2505 LQDQIAEGSSIEEEEKTDNATLLRLLEEGEKIQ 2537
>gi|21717822 WAP four-disulfide core domain 5 precursor [Homo
sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 2.4
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 36 QCPIDLPCQVTGC--QCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFH 93
QCP+ C C QC + V L + RC + C+ S CSG
Sbjct: 54 QCPLTRKCCYRACFRQCVPRVSVKLGSCPEDQLRCL-------SPMNHLCHKDSDCSGKK 106
Query: 94 SCFTCACGQ 102
C ACG+
Sbjct: 107 RCCHSACGR 115
>gi|32699015 zinc finger protein 454 [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 2.4
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 24/88 (27%)
Query: 60 GSQPIRCRC--KHFADQ---------HSAAPGFTCNTCSKCSGFHSCFT----------- 97
G +P RC K F DQ H+ +TCN C K HS T
Sbjct: 408 GEKPYRCGLCEKAFRDQSALAQHQRIHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKP 467
Query: 98 --CACGQPAYAHDTVVETKQERLAQEKP 123
C + A+ T + Q EKP
Sbjct: 468 YKCKICEKAFIRSTHLTQHQRIHTGEKP 495
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 3.2
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 81 FTCNTCSKCSGFHSCFTC 98
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 3.2
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 81 FTCNTCSKCSGFHSCFTC 98
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 3.2
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 81 FTCNTCSKCSGFHSCFTC 98
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 28.9 bits (63), Expect = 3.2
Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 22/79 (27%)
Query: 36 QCPIDLPCQVT----GCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSG 91
QCP+ +PCQ T C C L P C+ F A +C + C
Sbjct: 1297 QCPVGVPCQQTPRGPRCACPPGLSGP---------SCRSFPGSPPGASNASC-AAAPCLH 1346
Query: 92 FHSC--------FTCACGQ 102
SC F CAC Q
Sbjct: 1347 GGSCRPAPLAPFFRCACAQ 1365
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 3.2
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 81 FTCNTCSKCSGFHSCFTC 98
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 28.9 bits (63), Expect = 3.2
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 34 PQQCPIDLPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSG 91
P+ CP+ C+V G + + V LN S P C+ H TC C + G
Sbjct: 1193 PEDCPV---CEVAGRRFASGKKVTLNPSDPEHCQI-----CHCDVVNLTCEACQEPGG 1242
>gi|154937359 cysteine-rich PAK1 inhibitor [Homo sapiens]
Length = 446
Score = 28.9 bits (63), Expect = 3.2
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 30/90 (33%)
Query: 48 CQCRAYLYVPLNGSQPIRCRCKHFADQH--------------SAAPGFTCN----TCSK- 88
C A +VP+ ++ + CRC A H P TC CS+
Sbjct: 256 CGVPACSHVPMWSARLLTCRCGVPACSHVPMWSARLLTRAHVECPPAHTCRRGVPACSRA 315
Query: 89 ---CSGFHSCF--------TCACGQPAYAH 107
C H+C TC CG PA +H
Sbjct: 316 HMECPPAHTCHCGVPACSHTCRCGVPACSH 345
Score = 28.1 bits (61), Expect = 5.4
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 36 QCPIDLPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSC 95
+CP P C A +VP+ ++ + CRC A H P ++
Sbjct: 227 ECP---PAHTCRCGVPACSHVPMWSARLLTCRCGVPACSH--VPMWSARL---------- 271
Query: 96 FTCACGQPAYAH 107
TC CG PA +H
Sbjct: 272 LTCRCGVPACSH 283
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 28.5 bits (62), Expect = 4.1
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 45 VTGCQCRAYLYVPLNGS-QPIRCRCKHFADQHSAAPGFT----CNTCSKCSGFHSCFTCA 99
V GC C L G P C C+ + PG CNTC+ SG C T
Sbjct: 379 VDGCYCPNGLIFEDGGCVAPAECPCEFHGTLYP--PGSVVKEDCNTCTCTSGKWECSTAV 436
Query: 100 C 100
C
Sbjct: 437 C 437
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 28.5 bits (62), Expect = 4.1
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 45 VTGCQCRAYLYVPLNGS-QPIRCRCKHFADQHSAAPGFT----CNTCSKCSGFHSCFTCA 99
V GC C L G P C C+ + PG CNTC+ SG C T
Sbjct: 451 VDGCYCPNGLIFEDGGCVAPAECPCEFHGTLYP--PGSVVKEDCNTCTCTSGKWECSTAV 508
Query: 100 C 100
C
Sbjct: 509 C 509
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,571,537
Number of Sequences: 37866
Number of extensions: 397415
Number of successful extensions: 1473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1443
Number of HSP's gapped (non-prelim): 66
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.