Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RNF216 Sequence: fasta or formatted (923aa) NCBI GI: 46358403
Description:

ring finger protein 216 isoform a

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [866aa] ring finger protein 216 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         53           3
 C cysteine            3.6         33           2
 D aspartate           5.9         54           3
 E glutamate          11.4        105           3
 F phenylalanine       4.6         42           2
 G glycine             4.6         42           2
 H histidine           2.6         24           1
 I isoleucine          4.7         43           3
 K lysine              5.9         54           2
 L leucine             8.6         79           2
 M methionine          1.7         16           1
 N asparagine          4.4         41           3
 P proline             8.8         81           2
 Q glutamine           6.4         59           2
 R arginine            5.4         50           2
 S serine              6.1         56           3
 T threonine           2.9         27           1
 V valine              3.3         30           2
 W tryptophan          0.9          8           1
 Y tyrosine            2.8         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 216 isoform a 
RNF216                0.903   ring finger protein 216 isoform b 
RNF144A               0.030   ring finger protein 144 
RBCK1                 0.024   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.024   RanBP-type and C3HC4-type zinc finger containing 1 ...
RNF19A                0.023   ring finger protein 19 
RNF19A                0.023   ring finger protein 19 
RNF14                 0.020   ring finger protein 14 isoform 1 
RNF14                 0.020   ring finger protein 14 isoform 1 
RNF14                 0.020   ring finger protein 14 isoform 1 
RNF14                 0.020   ring finger protein 14 isoform 2 
RNF14                 0.020   ring finger protein 14 isoform 1 
RNF19B                0.020   ring finger protein 19B isoform a 
RNF19B                0.019   ring finger protein 19B isoform b 
ARIH1                 0.019   ariadne ubiquitin-conjugating enzyme E2 binding pro...
ARIH2                 0.019   ariadne homolog 2 
RNF217                0.017   ring finger protein 217 
RNF144B               0.016   IBR domain containing 2 
MLL4                  0.013   myeloid/lymphoid or mixed-lineage leukemia 4 
FMN1                  0.010   formin 1 
PARK2                 0.010   parkin isoform 3 
PARK2                 0.010   parkin isoform 2 
PARK2                 0.010   parkin isoform 1 
PPP1R13L              0.010   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.010   protein phosphatase 1, regulatory subunit 13 like [H...
SFRS15                0.009   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.009   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.009   splicing factor, arginine/serine-rich 15 isoform 1 [...
LOC100291797          0.008   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.008   PREDICTED: hypothetical protein XP_002346504 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press