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Search of human proteins with 188219620
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo
sapiens]
(262 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo sapi... 555 e-158
gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo sapi... 536 e-153
gi|188219622 hypothetical protein LOC340277 isoform 3 [Homo sapi... 396 e-111
gi|242117996 hypothetical protein LOC392307 [Homo sapiens] 75 8e-14
gi|134031945 SCO-spondin [Homo sapiens] 35 0.051
gi|21264602 laminin alpha 5 [Homo sapiens] 33 0.33
gi|24308065 netrin 5 [Homo sapiens] 33 0.33
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 32 0.43
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 32 0.56
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 31 0.96
gi|114431236 zinc finger protein 462 [Homo sapiens] 31 0.96
gi|24475859 zinc finger protein 101 [Homo sapiens] 31 0.96
gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens] 31 1.3
gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens] 31 1.3
gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens] 31 1.3
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 30 1.6
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 30 1.6
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 30 1.6
gi|126032338 ryanodine receptor 3 [Homo sapiens] 30 2.8
gi|216548193 RAD54-like protein [Homo sapiens] 29 3.6
gi|216548186 RAD54-like protein [Homo sapiens] 29 3.6
gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Ho... 29 3.6
gi|21717822 WAP four-disulfide core domain 5 precursor [Homo sap... 29 3.6
gi|32699015 zinc finger protein 454 [Homo sapiens] 29 3.6
gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 29 4.8
gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 29 4.8
gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform... 29 4.8
gi|134244285 Notch homolog 3 [Homo sapiens] 29 4.8
gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isofor... 29 4.8
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 29 4.8
>gi|188219620 hypothetical protein LOC340277 isoform 2 [Homo
sapiens]
Length = 262
Score = 555 bits (1429), Expect = e-158
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS 60
MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS
Sbjct: 1 MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS 60
Query: 61 PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 120
PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ
Sbjct: 61 PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 120
Query: 121 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 180
PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK
Sbjct: 121 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 180
Query: 181 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER 240
PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER
Sbjct: 181 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER 240
Query: 241 MKMEKAAKWKGKAPLPSATKPS 262
MKMEKAAKWKGKAPLPSATKPS
Sbjct: 241 MKMEKAAKWKGKAPLPSATKPS 262
>gi|188219618 hypothetical protein LOC340277 isoform 1 [Homo
sapiens]
Length = 298
Score = 536 bits (1382), Expect = e-153
Identities = 262/298 (87%), Positives = 262/298 (87%), Gaps = 36/298 (12%)
Query: 1 MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS 60
MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS
Sbjct: 1 MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS 60
Query: 61 PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 120
PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ
Sbjct: 61 PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 120
Query: 121 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 180
PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK
Sbjct: 121 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 180
Query: 181 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGI---------------------------- 212
PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGI
Sbjct: 181 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIGVPSVEFLESPITAVDSPFLKAFQASSS 240
Query: 213 --------VGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS 262
VGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS
Sbjct: 241 SSPETLTDVGTSSQVSSLRRPEEDDMAFFERRYQERMKMEKAAKWKGKAPLPSATKPS 298
>gi|188219622 hypothetical protein LOC340277 isoform 3 [Homo
sapiens]
Length = 204
Score = 396 bits (1018), Expect = e-111
Identities = 202/262 (77%), Positives = 203/262 (77%), Gaps = 58/262 (22%)
Query: 1 MERLTLPLGGAAAVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRS 60
MERLTLPLGGAAAVDE Y EY+R
Sbjct: 1 MERLTLPLGGAAAVDE---------------------YLEYRR----------------- 22
Query: 61 PTGMDCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 120
YKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ
Sbjct: 23 --------------------YKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQ 62
Query: 121 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 180
PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK
Sbjct: 63 PIRCRCKHFADQHSAAPGFTCNTCSKCSGFHSCFTCACGQPAYAHDTVVETKQERLAQEK 122
Query: 181 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER 240
PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER
Sbjct: 123 PVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDDMAFFERRYQER 182
Query: 241 MKMEKAAKWKGKAPLPSATKPS 262
MKMEKAAKWKGKAPLPSATKPS
Sbjct: 183 MKMEKAAKWKGKAPLPSATKPS 204
>gi|242117996 hypothetical protein LOC392307 [Homo sapiens]
Length = 402
Score = 74.7 bits (182), Expect = 8e-14
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 27/156 (17%)
Query: 50 LQNRLFVSWRSPTGM-DCKLVGPETLCFCTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQC 108
+Q L++ WR P + DC +G E+ CFC H ++H+ + I +PC+V+ C+C
Sbjct: 245 IQTGLYIGWRCPHYLWDCFRIGDESRCFCGHLLREHRIISD-------ISVPCKVSQCRC 297
Query: 109 RAYLYVPLNGSQ-----------------PIRCRCKHFADQHSAAPGFTCNTCSKCSG-F 150
+ ++P + +CRCKH ++H+A C C G F
Sbjct: 298 FMFCFIPSRPEEVGEFWLKRRATFDPKAWRAQCRCKHSHEEHAATGPHPCRHHGCCCGCF 357
Query: 151 HSCFTC-ACGQPAYAHDTVVETKQERLAQEKPVGQD 185
S F C AC + H+T +T++ R +P G D
Sbjct: 358 ESNFLCAACDRRWEEHETFFDTQKTRQRGGRPRGTD 393
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 35.4 bits (80), Expect = 0.051
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 77 CTHRYKQHKTDLEAIPQQCPIDLPCQVTGCQCRAYLYVPLNGSQPI-RCRCKHFADQHSA 135
C +R + +DL+ C D CQ GC+C G PI C C A HS
Sbjct: 4071 CANRCPRRCSDLQE-GIVCQDDQVCQ-KGCRCPKGSLEQDGGCVPIGHCDCTD-AQGHSW 4127
Query: 136 APGF----TCNTCSKCSGFHSCFTCACGQPAY 163
APG CN CS +G SC C P +
Sbjct: 4128 APGSQHQDACNNCSCQAGQLSCTAQPCPPPTH 4159
>gi|21264602 laminin alpha 5 [Homo sapiens]
Length = 3695
Score = 32.7 bits (73), Expect = 0.33
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 101 CQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCS----GFHSCFTC 156
CQ C R L L G+ + CRC+ PG+T C +CS GF SC C
Sbjct: 629 CQACTCDPRGALD-QLCGAGGL-CRCR---------PGYTGTACQECSPGFHGFPSCVPC 677
Query: 157 ACGQPAYAH 165
C H
Sbjct: 678 HCSAEGSLH 686
>gi|24308065 netrin 5 [Homo sapiens]
Length = 489
Score = 32.7 bits (73), Expect = 0.33
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 106 CQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGF-----------HSCF 154
CQC + ++P RC C+H H+ PG C +C H C
Sbjct: 157 CQCHGHAARCAARARPPRCHCRH----HTTGPG--CESCRPSHRDWPWRPATPRHPHPCL 210
Query: 155 TCACGQPA 162
C+C Q A
Sbjct: 211 PCSCNQHA 218
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 32.3 bits (72), Expect = 0.43
Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 27/128 (21%)
Query: 60 SPTGMDCKLVGPETLCF------CTHRYKQHKTDLEAIPQ-QCPI-DLPCQVTGCQCRAY 111
SP G D L P C C + Y + + + CPI D P Q TG RA
Sbjct: 2075 SPLGCDDDL--PSLCCMHYCCKSCWNEYLTTRIEQNLVLNCTCPIADCPAQPTGAFIRAI 2132
Query: 112 LYVP----------LNG-----SQPIRCRCKHFADQHSAAPGFTCNT-CSKCSGFHSCFT 155
+ P L G S C D+ G C T CSKC G+ SCF
Sbjct: 2133 VSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRILCRQGLGCGTTCSKC-GWASCFN 2191
Query: 156 CACGQPAY 163
C+ + Y
Sbjct: 2192 CSFPEAHY 2199
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 32.0 bits (71), Expect = 0.56
Identities = 26/99 (26%), Positives = 29/99 (29%), Gaps = 32/99 (32%)
Query: 92 PQQCPIDLPCQVTG----CQCRAYLYVPL--------------NGSQPIRCR-------- 125
PQQCP C C C + P +G QP C
Sbjct: 1047 PQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCACHPSRARGPT 1106
Query: 126 CKHFADQHSAAPGFTCNTCSKCSGFH------SCFTCAC 158
C F Q GF TCS+C H C C C
Sbjct: 1107 CNEFTGQCHCRAGFGGRTCSECQELHWGDPGLQCHACDC 1145
Score = 28.1 bits (61), Expect = 8.1
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 106 CQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKC-------SGFHSCFTCAC 158
C C P P +C C + Q P +C +C + H C CAC
Sbjct: 1038 CTCNLLGTNPQQCPSPDQCHCDPSSGQCPCLPNVQGPSCDRCAPNFWNLTSGHGCQPCAC 1097
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 31.2 bits (69), Expect = 0.96
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 117 NGSQPIRCRCKHFADQHSAAPGFTCNTCSKC----SGFHSCFTCACGQPAYAHD 166
NG QP +C CK G+T C +C + +C +C C A D
Sbjct: 420 NGKQPGQCPCKE---------GYTGEKCDRCQLGYKDYPTCVSCGCNPVGSASD 464
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 31.2 bits (69), Expect = 0.96
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 127 KHFADQHSAAPGFTCNTCSKCSGFHSCFT 155
+H+ D+H F C CS +GF S FT
Sbjct: 2208 RHYRDKHGGKKLFKCKDCSFYTGFKSAFT 2236
>gi|24475859 zinc finger protein 101 [Homo sapiens]
Length = 436
Score = 31.2 bits (69), Expect = 0.96
Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 13/138 (9%)
Query: 30 GKLFTPEEYEEYKRKVLPLRLQNRLFVSWRSPTG---MDCKLVGPETLC---FCTHRYKQ 83
GK+ T E+ E K P+ + + R+ TG CK G + TH +
Sbjct: 216 GKMHTGEKRYECKYCGKPIDYPSLFQIHVRTHTGEKPYKCKQCGKAFISAGYLRTHEIRS 275
Query: 84 HKTDLEAIPQQCPIDLPCQVT-----GCQCRAYLYVPLNGSQPIRCRCKHFADQ--HSAA 136
H + Q+C L C + LY ++ RC A + H+
Sbjct: 276 HALEKSHQCQECGKKLSCSSSLHRHERTHSGGKLYECQKCAKVFRCPTSLQAHERAHTGE 335
Query: 137 PGFTCNTCSKCSGFHSCF 154
+ CN C K + SCF
Sbjct: 336 RPYECNKCGKTFNYPSCF 353
>gi|110347400 odz, odd Oz/ten-m homolog 1 isoform 3 [Homo sapiens]
Length = 2725
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 13 AVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRSPTGMDCKLVGPE 72
A+ LE R + G LF E E ++ + +++ +PT DCK + P
Sbjct: 1420 AIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEIYIIAGAPTDCDCK-IDPN 1478
Query: 73 TLCF 76
CF
Sbjct: 1479 CDCF 1482
>gi|253970446 odz, odd Oz/ten-m homolog 1 isoform 2 [Homo sapiens]
Length = 2731
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 13 AVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRSPTGMDCKLVGPE 72
A+ LE R + G LF E E ++ + +++ +PT DCK + P
Sbjct: 1426 AIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEIYIIAGAPTDCDCK-IDPN 1484
Query: 73 TLCF 76
CF
Sbjct: 1485 CDCF 1488
>gi|253970444 odz, odd Oz/ten-m homolog 1 isoform 1 [Homo sapiens]
Length = 2732
Score = 30.8 bits (68), Expect = 1.3
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 13 AVDEYLEYRRIVGEDDGGKLFTPEEYEEYKRKVLPLRLQNRLFVSWRSPTGMDCKLVGPE 72
A+ LE R + G LF E E ++ + +++ +PT DCK + P
Sbjct: 1427 AIHSTLESARAISVSHSGLLFIAETDERKVNRIQQVTTNGEIYIIAGAPTDCDCK-IDPN 1485
Query: 73 TLCF 76
CF
Sbjct: 1486 CDCF 1489
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 30.4 bits (67), Expect = 1.6
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 99 LPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFHS-----C 153
+PCQ CQ L++ + + C CK G+ C+ C GFHS C
Sbjct: 378 MPCQPCDCQSAGSLHLQCDDTG--TCACK------PTVTGWKCDRC--LPGFHSLSEGGC 427
Query: 154 FTCACGQPAYAHDT 167
C C PA + DT
Sbjct: 428 RPCTC-NPAGSLDT 440
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 101 CQVTGCQCRAYLY----VPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCS 148
C C+C A + V +NG HF QH +PG C CS+CS
Sbjct: 688 CNRMSCRCGAQMCYLCRVSINGYD-------HFC-QHPRSPGAPCQECSRCS 731
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 12/52 (23%)
Query: 101 CQVTGCQCRAYLY----VPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCS 148
C C+C A + V +NG HF QH +PG C CS+CS
Sbjct: 745 CNRMSCRCGAQMCYLCRVSINGYD-------HFC-QHPRSPGAPCQECSRCS 788
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 29.6 bits (65), Expect = 2.8
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 170 ETKQERLAQEKPVGQDIPYAAMGGLTGFSSLAEGYMRLDDSGIVGTSSQVSSLRRPEEDD 229
E ++E Q P+ Q I Y + LT S L + + S ++ S Q +ED
Sbjct: 3541 EEEEETEKQPDPLHQIILYFSRNALTERSKLEDDPLYTSYSSMMAKSCQSGEDEEEDEDK 3600
Query: 230 MAFFERRYQERMK 242
FE + E+ K
Sbjct: 3601 EKTFEEKEMEKQK 3613
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 106 CQCRAYLYVPLNGSQPIRCRCKHFADQHS-AAPGFTCNTCSKCSG 149
C+ R YLYV L+G+ I+ R K +S ++P F SK G
Sbjct: 533 CRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGG 577
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 106 CQCRAYLYVPLNGSQPIRCRCKHFADQHS-AAPGFTCNTCSKCSG 149
C+ R YLYV L+G+ I+ R K +S ++P F SK G
Sbjct: 533 CRARRYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGG 577
>gi|31317272 WD repeat and FYVE domain containing 3 isoform 1 [Homo
sapiens]
Length = 3526
Score = 29.3 bits (64), Expect = 3.6
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 157 ACGQPAYAHDTVVETKQERLAQEKPVGQDIPYAAMGGLT-----GFSSLAEGYMRLDDSG 211
A G PA D +VE+ + AQ++P + A + GL S +G +
Sbjct: 2445 ASGNPAIVQDAIVESSEGEAAQQEPEHGEDTIAKVKGLVKPPLKRSRSAPDGGDEENQEQ 2504
Query: 212 IVGTSSQVSSLRRPEEDDMAFFERRYQERMKME 244
+ ++ SS+ E+ D A R +E K++
Sbjct: 2505 LQDQIAEGSSIEEEEKTDNATLLRLLEEGEKIQ 2537
>gi|21717822 WAP four-disulfide core domain 5 precursor [Homo
sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 3.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 94 QCPIDLPCQVTGC--QCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSGFH 151
QCP+ C C QC + V L + RC + C+ S CSG
Sbjct: 54 QCPLTRKCCYRACFRQCVPRVSVKLGSCPEDQLRCL-------SPMNHLCHKDSDCSGKK 106
Query: 152 SCFTCACGQ 160
C ACG+
Sbjct: 107 RCCHSACGR 115
>gi|32699015 zinc finger protein 454 [Homo sapiens]
Length = 522
Score = 29.3 bits (64), Expect = 3.6
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 24/88 (27%)
Query: 118 GSQPIRCRC--KHFADQ---------HSAAPGFTCNTCSKCSGFHSCFT----------- 155
G +P RC K F DQ H+ +TCN C K HS T
Sbjct: 408 GEKPYRCGLCEKAFRDQSALAQHQRIHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKP 467
Query: 156 --CACGQPAYAHDTVVETKQERLAQEKP 181
C + A+ T + Q EKP
Sbjct: 468 YKCKICEKAFIRSTHLTQHQRIHTGEKP 495
>gi|19913358 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 139 FTCNTCSKCSGFHSCFTC 156
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|19913350 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 139 FTCNTCSKCSGFHSCFTC 156
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|19913348 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 139 FTCNTCSKCSGFHSCFTC 156
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 28.9 bits (63), Expect = 4.8
Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 22/79 (27%)
Query: 94 QCPIDLPCQVT----GCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSG 149
QCP+ +PCQ T C C L P C+ F A +C + C
Sbjct: 1297 QCPVGVPCQQTPRGPRCACPPGLSGP---------SCRSFPGSPPGASNASC-AAAPCLH 1346
Query: 150 FHSC--------FTCACGQ 160
SC F CAC Q
Sbjct: 1347 GGSCRPAPLAPFFRCACAQ 1365
>gi|109633019 Wolf-Hirschhorn syndrome candidate 1 protein isoform 1
[Homo sapiens]
Length = 1365
Score = 28.9 bits (63), Expect = 4.8
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 139 FTCNTCSKCSGFHSCFTC 156
FTC+ C+ SG HSCF C
Sbjct: 705 FTCSECA--SGIHSCFVC 720
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 28.9 bits (63), Expect = 4.8
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 92 PQQCPIDLPCQVTGCQCRAYLYVPLNGSQPIRCRCKHFADQHSAAPGFTCNTCSKCSG 149
P+ CP+ C+V G + + V LN S P C+ H TC C + G
Sbjct: 1193 PEDCPV---CEVAGRRFASGKKVTLNPSDPEHCQI-----CHCDVVNLTCEACQEPGG 1242
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,456,182
Number of Sequences: 37866
Number of extensions: 554602
Number of successful extensions: 1713
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1681
Number of HSP's gapped (non-prelim): 65
length of query: 262
length of database: 18,247,518
effective HSP length: 100
effective length of query: 162
effective length of database: 14,460,918
effective search space: 2342668716
effective search space used: 2342668716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.