Guide to the Human Genome
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Name: LOC728905 Sequence: fasta or formatted (168aa) NCBI GI: 113411363
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         12           1
 C cysteine            3.0          5           1
 D aspartate           1.2          2           1
 E glutamate           6.0         10           2
 F phenylalanine       2.4          4           1
 G glycine             9.5         16           2
 H histidine           2.4          4           1
 I isoleucine          3.0          5           2
 K lysine              2.4          4           2
 L leucine            15.5         26           2
 M methionine          1.8          3           1
 N asparagine          2.4          4           1
 P proline            10.7         18           2
 Q glutamine           4.8          8           1
 R arginine           10.1         17           2
 S serine              7.1         12           2
 T threonine           4.2          7           1
 V valine              4.2          7           1
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728789             1.000   PREDICTED: hypothetical protein 
PI4KA                 0.022   phosphatidylinositol 4-kinase type 3 alpha isoform 1 ...
PI4KA                 0.022   phosphatidylinositol 4-kinase type 3 alpha isoform ...
CXorf64               0.022   hypothetical protein LOC100130613 
LOC729204             0.019   PREDICTED: similar to hCG2045644 
LOC729204             0.019   PREDICTED: similar to hCG2045644 
LOC729204             0.019   PREDICTED: similar to hCG2045644 
C1orf223              0.019   hypothetical protein LOC374973 
C1orf94               0.016   hypothetical protein LOC84970 isoform b 
C1orf94               0.016   hypothetical protein LOC84970 isoform a 
PKD1L3                0.012   PREDICTED: polycystin 1-like 3 
PKD1L3                0.012   polycystin 1-like 3 
STARD13               0.012   StAR-related lipid transfer (START) domain containin...
STARD13               0.012   StAR-related lipid transfer (START) domain containin...
STARD13               0.012   StAR-related lipid transfer (START) domain containin...
HOXA3                 0.012   homeobox A3 isoform b 
HOXA3                 0.012   homeobox A3 isoform a 
HOXA3                 0.012   homeobox A3 isoform a 
JPH2                  0.012   junctophilin 2 isoform 1 
MAST3                 0.012   microtubule associated serine/threonine kinase 3 [H...
TNR                   0.009   tenascin R 
RUNDC1                0.009   RUN domain containing 1 
LOC100288473          0.009   PREDICTED: hypothetical protein XP_002343336 
CELSR3                0.006   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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