Guide to the Human Genome
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Name: LOC729204 Sequence: fasta or formatted (363aa) NCBI GI: 169204628
Description:

PREDICTED: similar to hCG2045644

Not currently referenced in the text

Other entries for this name:
alt prot {301aa} PREDICTED: similar to hCG2045644
alt prot {301aa} PREDICTED: similar to hCG2045644
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         37           4
 C cysteine            1.9          7           1
 D aspartate           1.9          7           1
 E glutamate           3.6         13           1
 F phenylalanine       2.5          9           2
 G glycine             8.8         32           2
 H histidine           3.3         12           1
 I isoleucine          2.8         10           1
 K lysine              1.4          5           1
 L leucine             9.9         36           3
 M methionine          1.4          5           1
 N asparagine          3.0         11           2
 P proline            12.4         45           2
 Q glutamine           3.6         13           2
 R arginine           12.1         44           4
 S serine             10.2         37           2
 T threonine           4.4         16           1
 V valine              3.6         13           2
 W tryptophan          1.7          6           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2045644 
LOC729204             0.736   PREDICTED: similar to hCG2045644 
LOC729204             0.730   PREDICTED: similar to hCG2045644 
APC2                  0.022   adenomatosis polyposis coli 2 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
SEC31A                0.021   SEC31 homolog A isoform 3 
SEC31A                0.019   SEC31 homolog A isoform 1 
SEC31A                0.019   SEC31 homolog A isoform 2 
SEC31A                0.019   SEC31 homolog A isoform 1 
RSBN1                 0.017   round spermatid basic protein 1 
LOC100289085          0.017   PREDICTED: hypothetical protein XP_002343916 
LOC100288738          0.017   PREDICTED: hypothetical protein XP_002343788 
COL23A1               0.017   collagen, type XXIII, alpha 1 
TAF4                  0.017   TBP-associated factor 4 
SRRM2                 0.017   splicing coactivator subunit SRm300 
LOC100293575          0.015   PREDICTED: hypothetical protein 
LOC728431             0.015   PREDICTED: hypothetical protein 
LOC100290681          0.015   PREDICTED: hypothetical protein XP_002346859 
LOC100287330          0.015   PREDICTED: hypothetical protein XP_002342702 
LOC729370             0.015   PREDICTED: hypothetical protein 
ZNF828                0.015   zinc finger protein 828 
LOC100292296          0.014   PREDICTED: hypothetical protein 
LOC100290476          0.014   PREDICTED: hypothetical protein XP_002347412 
LOC100133280          0.014   PREDICTED: similar to Putative POM121-like protein ...
DACT3                 0.014   thymus expressed gene 3-like 
COL3A1                0.014   collagen type III alpha 1 preproprotein 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
BLNK                  0.012   B-cell linker isoform 1 
AGAP2                 0.012   centaurin, gamma 1 isoform PIKE-L 
LOC729417             0.012   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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