Guide to the Human Genome
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Name: C1orf223 Sequence: fasta or formatted (206aa) NCBI GI: 224458295
Description:

hypothetical protein LOC374973

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         18           2
 C cysteine            1.9          4           1
 D aspartate           3.9          8           1
 E glutamate           5.8         12           2
 F phenylalanine       4.9         10           1
 G glycine             3.9          8           2
 H histidine           2.9          6           1
 I isoleucine          3.9          8           2
 K lysine              2.4          5           1
 L leucine            11.7         24           2
 M methionine          1.9          4           1
 N asparagine          5.3         11           1
 P proline            11.7         24           2
 Q glutamine           6.3         13           2
 R arginine            5.3         11           3
 S serine              5.8         12           1
 T threonine           3.9          8           1
 V valine              4.9         10           1
 W tryptophan          2.4          5           1
 Y tyrosine            2.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC374973 
INF2                  0.022   inverted formin 2 isoform 2 
INF2                  0.022   inverted formin 2 isoform 1 
SIN3A                 0.020   transcriptional co-repressor Sin3A 
SIN3A                 0.020   transcriptional co-repressor Sin3A 
SIN3A                 0.020   transcriptional co-repressor Sin3A 
RCOR3                 0.020   REST corepressor 3 isoform a 
RCOR3                 0.020   REST corepressor 3 isoform d 
TROAP                 0.020   tastin isoform 1 
ZFHX4                 0.020   zinc finger homeodomain 4 
ANK3                  0.020   ankyrin 3 isoform 1 
SOBP                  0.020   sine oculis binding protein homolog 
RBM12                 0.017   RNA binding motif protein 12 
RBM12                 0.017   RNA binding motif protein 12 
PRR12                 0.017   proline rich 12 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
SETD1A                0.017   SET domain containing 1A 
GLTSCR1               0.017   glioma tumor suppressor candidate region gene 1 [Ho...
IER5L                 0.017   immediate early response 5-like 
MYBPH                 0.017   myosin binding protein H 
LOC100131102          0.017   PREDICTED: hypothetical protein 
C9orf86               0.015   Rab-like GTP-binding protein 1 isoform 2 
C9orf86               0.015   Rab-like GTP-binding protein 1 isoform 1 
LOC440829             0.015   PREDICTED: transmembrane protein 46-like 
LOC100131102          0.015   PREDICTED: hypothetical protein 
LOC100131102          0.015   PREDICTED: hypothetical protein 
GRID1                 0.015   glutamate receptor, ionotropic, delta 1 precursor [H...
WNK2                  0.015   WNK lysine deficient protein kinase 2 
SETD1B                0.015   SET domain containing 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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