Search of human proteins with 10190700

Search of human proteins with 10190700

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10190700 activation-induced cytidine deaminase [Homo
sapiens]
         (198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|10190700 activation-induced cytidine deaminase [Homo sapiens]      422   e-119
gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic poly...   151   4e-37
gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic poly...   144   5e-35
gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic poly...   144   6e-35
gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic poly...   139   1e-33
gi|21955158 phorbolin 1 [Homo sapiens]                                138   3e-33
gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic pol...   132   2e-31
gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic poly...   109   2e-24
gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic polyp...   106   1e-23
gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]        86   2e-17
gi|39932589 Rho GTPase activating protein 18 [Homo sapiens]            29   2.3  
gi|42476193 transmembrane protein 66 [Homo sapiens]                    28   3.9  
gi|77874206 poly(A) polymerase beta (testis specific) [Homo sapi...    28   5.1  
gi|153791492 eukaryotic translation initiation factor 3, subunit...    28   6.7  
gi|134244281 melanoma-associated antigen p97 isoform 1 precursor...    28   6.7  
gi|83700233 eukaryotic translation initiation factor 3, subunit ...    28   6.7  
gi|4503525 eukaryotic translation initiation factor 3, subunit C...    28   6.7  
gi|4885069 ras homolog gene family, member E [Homo sapiens]            27   8.7  
gi|209447096 transmembrane protein 2 isoform b [Homo sapiens]          27   8.7  
gi|7019555 transmembrane protein 2 isoform a [Homo sapiens]            27   8.7  

>gi|10190700 activation-induced cytidine deaminase [Homo sapiens]
          Length = 198

 Score =  422 bits (1086), Expect = e-119
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL 60
           MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL
Sbjct: 1   MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELL 60

Query: 61  FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK 120
           FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK
Sbjct: 61  FLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRK 120

Query: 121 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180
           AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL
Sbjct: 121 AEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180

Query: 181 LPLYEVDDLRDAFRTLGL 198
           LPLYEVDDLRDAFRTLGL
Sbjct: 181 LPLYEVDDLRDAFRTLGL 198


>gi|13399304 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3G [Homo sapiens]
          Length = 384

 Score =  151 bits (381), Expect = 4e-37
 Identities = 83/185 (44%), Positives = 114/185 (61%), Gaps = 12/185 (6%)

Query: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDF--GYLRNK--------NGC 55
           M+   F + F N  W +GR ETYLCY V+R  + T   L+   G+L N+         G 
Sbjct: 197 MDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGR 256

Query: 56  HVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYF 115
           H EL FL  I  W LD  + YRVT FTSWSPC+ CA+ +A F+  N ++SL IFTAR+Y 
Sbjct: 257 HAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIY- 315

Query: 116 CEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQ 175
            +D+    EGLR L  AG +I+IMT+ ++ +CW+TFV++    F+ W+GL E+S  LS +
Sbjct: 316 -DDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGR 374

Query: 176 LRRIL 180
           LR IL
Sbjct: 375 LRAIL 379



 Score = 92.4 bits (228), Expect = 2e-19
 Identities = 61/183 (33%), Positives = 88/183 (48%), Gaps = 9/183 (4%)

Query: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT---SFSLDFGYLRNKNGCHVELLFL 62
           M R  F Y F N      R   +LCY VK +  +       +  G + ++   H E+ F 
Sbjct: 12  MYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRFF 71

Query: 63  RYISDW-DLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKA 121
            + S W  L   + Y VTW+ SWSPC  C R +A FL  +P ++L IF ARLY+  D   
Sbjct: 72  HWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDY 131

Query: 122 EPEGLRRL--HRAG--VQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLR 177
           + E LR L   R G    + IM + ++ +CW+ FV +    F+ W  L +  + L   L 
Sbjct: 132 Q-EALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLHIMLG 190

Query: 178 RIL 180
            IL
Sbjct: 191 EIL 193


>gi|22907039 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3C [Homo sapiens]
          Length = 190

 Score =  144 bits (363), Expect = 5e-35
 Identities = 77/174 (44%), Positives = 100/174 (57%), Gaps = 5/174 (2%)

Query: 11  FLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNK----NGCHVELLFLRYIS 66
           F +QFKN+  A  R ET+LC+ V+     +  S   G  RN+      CH E  FL +  
Sbjct: 17  FYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFC 76

Query: 67  DWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGL 126
           D  L P   Y+VTW+TSWSPC DCA  VA+FL  + N++L IFTARLY+ +      EGL
Sbjct: 77  DDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQ-YPCYQEGL 135

Query: 127 RRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180
           R L + GV + IM ++D+ YCW  FV N    FK W+GL  N   L R+LR  L
Sbjct: 136 RSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESL 189


>gi|22907044 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3F isoform a [Homo sapiens]
          Length = 373

 Score =  144 bits (362), Expect = 6e-35
 Identities = 75/174 (43%), Positives = 102/174 (58%), Gaps = 5/174 (2%)

Query: 11  FLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNK----NGCHVELLFLRYIS 66
           F + FKN+R A GR E++LC+ ++     +  S   G  RN+      CH E  FL +  
Sbjct: 200 FYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFC 259

Query: 67  DWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGL 126
           D  L P   Y VTW+TSWSPC +CA  VA+FL  + N++L IFTARLY+  D   + EGL
Sbjct: 260 DDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQ-EGL 318

Query: 127 RRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180
           R L + G  + IM +KD+ YCW  FV N +  FK W+GL  N + L  +L+ IL
Sbjct: 319 RSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEIL 372



 Score =  108 bits (271), Expect = 2e-24
 Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 4/178 (2%)

Query: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT---SFSLDFGYLRNKNGCHVELLFL 62
           M R  F Y F N      R   +LCY VK +  +       +  G + ++   H E+ FL
Sbjct: 12  MYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFL 71

Query: 63  RYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAE 122
            +     L   +C+++TWF SW+PC DC   +A+FL  +PN++L I  ARLY+  +R   
Sbjct: 72  SWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYR 131

Query: 123 PEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180
              L RL +AG ++ IM  +++ YCW  FV +  + F  W    +N   L R L+ IL
Sbjct: 132 -RALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEIL 188


>gi|22907025 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3B [Homo sapiens]
          Length = 382

 Score =  139 bits (351), Expect = 1e-33
 Identities = 82/188 (43%), Positives = 108/188 (57%), Gaps = 14/188 (7%)

Query: 5   LMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLD--FGYLRN--KN------G 54
           LM+   F + F N      RR+TYLCY V+R D+ T   +D   G+L N  KN      G
Sbjct: 192 LMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCNEAKNLLCGFYG 251

Query: 55  CHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGNPNLSLRIFTAR 112
            H EL FL  +    LDP + YRVTWF SWSPC+   CA  V  FL+ N ++ LRIF AR
Sbjct: 252 RHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAAR 311

Query: 113 LYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRL 172
           +Y  +      E L+ L  AG Q++IMT+ ++ YCW+TFV      F+ W+GL E+S  L
Sbjct: 312 IYDYDP--LYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQAL 369

Query: 173 SRQLRRIL 180
           S +LR IL
Sbjct: 370 SGRLRAIL 377



 Score =  123 bits (308), Expect = 1e-28
 Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 5/186 (2%)

Query: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRN----KNGCHVELLF 61
           M R  F   F+N     GR  T+LCY VK +   ++   D G  R     K   H E+ F
Sbjct: 12  MYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVYFKPQYHAEMCF 71

Query: 62  LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKA 121
           L +     L   +C+++TWF SW+PC DC   +A+FL  +PN++L I  ARLY+  +R  
Sbjct: 72  LSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAARLYYYWERDY 131

Query: 122 EPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILL 181
               L RL +AG ++ IM ++++ YCW  FV N  + F  W    EN   L R L+ IL 
Sbjct: 132 R-RALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAFLHRTLKEILR 190

Query: 182 PLYEVD 187
            L + D
Sbjct: 191 YLMDPD 196


>gi|21955158 phorbolin 1 [Homo sapiens]
          Length = 199

 Score =  138 bits (348), Expect = 3e-33
 Identities = 82/188 (43%), Positives = 110/188 (58%), Gaps = 17/188 (9%)

Query: 5   LMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDF--GYLRN--KN------G 54
           LM+   F   F N     GR +TYLCY V+R D+ TS  +D   G+L N  KN      G
Sbjct: 12  LMDPHIFTSNFNN---GIGRHKTYLCYEVERLDNGTSVKMDQHRGFLHNQAKNLLCGFYG 68

Query: 55  CHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYD--CARHVADFLRGNPNLSLRIFTAR 112
            H EL FL  +    LDP + YRVTWF SWSPC+   CA  V  FL+ N ++ LRIF AR
Sbjct: 69  RHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAAR 128

Query: 113 LYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRL 172
           +Y  +      E L+ L  AG Q++IMT+ ++ +CW+TFV++    F+ W+GL E+S  L
Sbjct: 129 IYDYDP--LYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQGCPFQPWDGLDEHSQAL 186

Query: 173 SRQLRRIL 180
           S +LR IL
Sbjct: 187 SGRLRAIL 194


>gi|187608816 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3D [Homo sapiens]
          Length = 386

 Score =  132 bits (332), Expect = 2e-31
 Identities = 71/174 (40%), Positives = 98/174 (56%), Gaps = 5/174 (2%)

Query: 11  FLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNK----NGCHVELLFLRYIS 66
           F + FKN+  A GR E++LC+ ++     ++     G  RN+      CH E  FL +  
Sbjct: 213 FYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFC 272

Query: 67  DWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGL 126
           D  L P   Y VTW+TSWSPC +CA  VA+FL  + N++L IFTARL +  D   + EGL
Sbjct: 273 DDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQ-EGL 331

Query: 127 RRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRIL 180
             L + G  + IM +KD+  CW  FV + +  FK W+GL  N   L R+LR IL
Sbjct: 332 CSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREIL 385



 Score =  113 bits (282), Expect = 1e-25
 Identities = 68/193 (35%), Positives = 93/193 (48%), Gaps = 21/193 (10%)

Query: 6   MNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFG------------------ 47
           M R  F   F+N     GR  T+LCY VK +   ++   D G                  
Sbjct: 12  MYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEV 71

Query: 48  YLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLR 107
           Y R +N  H E+ FL +     L   R +++TWF SW+PC  C   V  FL  +PN++L 
Sbjct: 72  YFRFEN--HAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLT 129

Query: 108 IFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHE 167
           I  ARLY+  DR      L RLH+AG ++ IM ++D+ YCW  FV N  + F  W    +
Sbjct: 130 ISAARLYYYRDRDWR-WVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDD 188

Query: 168 NSVRLSRQLRRIL 180
           N   L R L+ IL
Sbjct: 189 NYASLHRTLKEIL 201


>gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3H [Homo sapiens]
          Length = 183

 Score =  109 bits (272), Expect = 2e-24
 Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 15/184 (8%)

Query: 5   LMNRRKFLYQFKNVRWAKGR---RETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELLF 61
           L+    F  QF N R  +     R+  LCY +  ++ +T      GY  NK  CH E+ F
Sbjct: 3   LLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQNGSTPTR---GYFENKKKCHAEICF 59

Query: 62  LRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYF--CEDR 119
           +  I    LD  +CY+VT + +WSPC  CA  + DF++ + +L+L IF +RLY+  C   
Sbjct: 60  INEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWC--- 116

Query: 120 KAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE----RTFKAWEGLHENSVRLSRQ 175
           K + +GLR L  + V + +M F ++  CW  FV++ +      +K  E L +NS  + R+
Sbjct: 117 KPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKMLEELDKNSRAIKRR 176

Query: 176 LRRI 179
           L RI
Sbjct: 177 LERI 180


>gi|5802978 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 2 [Homo sapiens]
          Length = 224

 Score =  106 bits (264), Expect = 1e-23
 Identities = 61/174 (35%), Positives = 89/174 (51%), Gaps = 6/174 (3%)

Query: 11  FLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGC-HVELLFLRYISDWD 69
           F +QF+NV ++ GR +T+LCYVV+ +          GYL +++   H E  F   I    
Sbjct: 52  FKFQFRNVEYSSGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILP-A 110

Query: 70  LDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRL 129
            DP   Y VTW+ S SPC  CA  +   L    NL L I   RL+  E+ + +   L++L
Sbjct: 111 FDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQ-AALKKL 169

Query: 130 HRAGVQIAIMTFKDYFYCWNTFVENHE---RTFKAWEGLHENSVRLSRQLRRIL 180
             AG ++ IM  +D+ Y W  FVE  E   + F+ WE + EN +    +L  IL
Sbjct: 170 KEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADIL 223


>gi|61743957 apolipoprotein B mRNA editing enzyme [Homo sapiens]
          Length = 236

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 39/98 (39%), Positives = 64/98 (65%), Gaps = 2/98 (2%)

Query: 56  HVELLFLR-YISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLY 114
           HVE+ F++ + S+ D  P     +TWF SWSPC++C++ + +FL  +P ++L I+ ARL+
Sbjct: 61  HVEVNFIKKFTSERDFHPSMSCSITWFLSWSPCWECSQAIREFLSRHPGVTLVIYVARLF 120

Query: 115 FCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFV 152
           +  D++   +GLR L  +GV I IM   +Y++CW  FV
Sbjct: 121 WHMDQQ-NRQGLRDLVNSGVTIQIMRASEYYHCWRNFV 157


>gi|39932589 Rho GTPase activating protein 18 [Homo sapiens]
          Length = 663

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 14/181 (7%)

Query: 16  KNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELLFLRYISDW---DLDP 72
           + ++ +KG   T   + + +  + T+   D      K  CH+ L+ L  + D    +L  
Sbjct: 249 EKIQKSKGDDATLPSFRLPKDKTGTTRIGDLAPQDMKKVCHLALIELTALYDVLGIELKQ 308

Query: 73  GRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLR-IFTARLYFCEDRKAEPEGLRRLHR 131
            +  ++    S   C      +    R  P + +  IF   +   E+R  E EGL R+  
Sbjct: 309 QKAVKIKTKDSGLFCVPLTALLEQDQRKVPGMRIPLIFQKLISRIEERGLETEGLLRIPG 368

Query: 132 AGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGL--HENSVRLSRQLRRILLPLYEVDDL 189
           A ++I  +       C     + +E TF  WE +  H+ +  L   +R +  PL  V+ L
Sbjct: 369 AAIRIKNL-------CQELEAKFYEGTFN-WESVKQHDAASLLKLFIRELPQPLLSVEYL 420

Query: 190 R 190
           +
Sbjct: 421 K 421


>gi|42476193 transmembrane protein 66 [Homo sapiens]
          Length = 339

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 125 GLRRLHRAGVQIAIMTFKDYFYCWNT 150
           GL++L  +G Q    +F DY+Y W++
Sbjct: 142 GLQKLKESGKQHGFASFSDYYYKWSS 167


>gi|77874206 poly(A) polymerase beta (testis specific) [Homo
           sapiens]
          Length = 637

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 36  RDSATSFSLDFGYLRNKNGCHVELLFLRYISDWDLDPGRCYRVTW--FTSWSPCYDCARH 93
           RD +   +LD   +R+ NGC V    L  + + D      +R+T      W+ C++   +
Sbjct: 186 RDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNID-----NFRLTLRAIKLWAKCHNIYSN 240

Query: 94  VADFLRGNPNLSLRIFTARLY 114
           +  FL G     L   T +LY
Sbjct: 241 ILGFLGGVSWAMLVARTCQLY 261


>gi|153791492 eukaryotic translation initiation factor 3, subunit
           C-like [Homo sapiens]
          Length = 914

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 84  WSPCYDCARHVADFLRGNPNL 104
           W  C DC   + D L  NPN+
Sbjct: 399 WGKCLDCINELMDILFANPNI 419


>gi|134244281 melanoma-associated antigen p97 isoform 1 precursor
           [Homo sapiens]
          Length = 738

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 27  TYLCYVVKRRDSATSFSLDFGYLRNKNGCH 56
           +Y    V RRDS+ +F+LD   LR K  CH
Sbjct: 450 SYYVVAVVRRDSSHAFTLD--ELRGKRSCH 477


>gi|83700233 eukaryotic translation initiation factor 3, subunit C
           [Homo sapiens]
          Length = 913

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 84  WSPCYDCARHVADFLRGNPNL 104
           W  C DC   + D L  NPN+
Sbjct: 398 WGKCLDCINELMDILFANPNI 418


>gi|4503525 eukaryotic translation initiation factor 3, subunit C
           [Homo sapiens]
          Length = 913

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 84  WSPCYDCARHVADFLRGNPNL 104
           W  C DC   + D L  NPN+
Sbjct: 398 WGKCLDCINELMDILFANPNI 418


>gi|4885069 ras homolog gene family, member E [Homo sapiens]
          Length = 244

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 56 HVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCAR 92
          +V  +F  Y + +++D  R     W TS SP YD  R
Sbjct: 52 YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 88


>gi|209447096 transmembrane protein 2 isoform b [Homo sapiens]
          Length = 1320

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 11/49 (22%)

Query: 8    RRKFLY--QFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNG 54
            R  FLY   F    W +      LCY      S TSF + FGYL+ +NG
Sbjct: 991  RTTFLYLVNFNKNDWIR----VGLCY-----PSNTSFQVTFGYLQRQNG 1030


>gi|7019555 transmembrane protein 2 isoform a [Homo sapiens]
          Length = 1383

 Score = 27.3 bits (59), Expect = 8.7
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 11/49 (22%)

Query: 8    RRKFLY--QFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNG 54
            R  FLY   F    W +      LCY      S TSF + FGYL+ +NG
Sbjct: 1054 RTTFLYLVNFNKNDWIR----VGLCY-----PSNTSFQVTFGYLQRQNG 1093


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.143    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,510,392
Number of Sequences: 37866
Number of extensions: 319471
Number of successful extensions: 610
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 24
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.