Guide to the Human Genome
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Name: TMEM2 Sequence: fasta or formatted (1383aa) NCBI GI: 7019555
Description:

transmembrane protein 2 isoform a

Not currently referenced in the text

Other entries for this name:
alt prot {1320aa} transmembrane protein 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         77           3
 C cysteine            1.8         25           1
 D aspartate           5.4         75           2
 E glutamate           4.7         65           2
 F phenylalanine       5.5         76           2
 G glycine             8.5        117           2
 H histidine           2.8         39           2
 I isoleucine          5.4         75           2
 K lysine              5.3         73           2
 L leucine             8.1        112           3
 M methionine          1.7         23           1
 N asparagine          4.6         64           3
 P proline             5.2         72           5
 Q glutamine           4.9         68           3
 R arginine            5.5         76           3
 S serine              8.2        114           2
 T threonine           5.9         81           2
 V valine              6.1         85           2
 W tryptophan          1.1         15           1
 Y tyrosine            3.7         51           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 2 isoform a 
TMEM2                 0.775   transmembrane protein 2 isoform b 
KIAA1199              0.311   KIAA1199 
PKHD1L1               0.050   fibrocystin L 
PKHD1                 0.015   fibrocystin isoform 2 
PKHD1                 0.015   fibrocystin isoform 1 
POMGNT1               0.009   O-linked mannose beta1,2-N-acetylglucosaminyltransf...
FAM3D                 0.007   family with sequence similarity 3, member D 
FAM3A                 0.006   family 3, member A protein 
FAM3C                 0.006   family with sequence similarity 3, member C precurso...
FAM3C                 0.006   family with sequence similarity 3, member C precursor...
FAM3B                 0.004   family with sequence similarity 3, member B isoform ...
FAM3B                 0.004   family with sequence similarity 3, member B isoform ...
DICER1                0.002   dicer1 
DICER1                0.002   dicer1 
MAP7D1                0.002   MAP7 domain containing 1 
SYCP2L                0.002   synaptonemal complex protein 2-like 
C7orf51               0.002   hypothetical protein FLJ37538 
CRMP1                 0.002   collapsin response mediator protein 1 isoform 1 [Hom...
CRMP1                 0.002   collapsin response mediator protein 1 isoform 2 [Homo...
AKAP4                 0.002   A-kinase anchor protein 4 isoform 2 
AKAP4                 0.002   A-kinase anchor protein 4 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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