Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: APOBEC3B Sequence: fasta or formatted (382aa) NCBI GI: 22907025
Description:

apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B

Referenced in:

Additional Host Defense Functions
RNA Editing and Other RNA Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         23           2
 C cysteine            3.9         15           1
 D aspartate           5.2         20           1
 E glutamate           6.5         25           2
 F phenylalanine       7.1         27           1
 G glycine             4.7         18           1
 H histidine           1.8          7           1
 I isoleucine          3.4         13           1
 K lysine              2.4          9           1
 L leucine             9.9         38           2
 M methionine          2.9         11           1
 N asparagine          5.0         19           2
 P proline             4.5         17           1
 Q glutamine           5.2         20           2
 R arginine            7.9         30           3
 S serine              3.7         14           1
 T threonine           4.5         17           1
 V valine              4.5         17           1
 W tryptophan          3.7         14           1
 Y tyrosine            7.3         28           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apolipoprotein B mRNA editing enzyme, catalytic poly... 
APOBEC3D              0.520   apolipoprotein B mRNA editing enzyme, catalytic pol...
APOBEC3F              0.519   apolipoprotein B mRNA editing enzyme, catalytic poly...
APOBEC3G              0.509   apolipoprotein B mRNA editing enzyme, catalytic poly...
APOBEC3A              0.414   phorbolin 1 
APOBEC3C              0.230   apolipoprotein B mRNA editing enzyme, catalytic poly...
AICDA                 0.142   activation-induced cytidine deaminase 
APOBEC3H              0.089   apolipoprotein B mRNA editing enzyme, catalytic poly...
APOBEC2               0.086   apolipoprotein B mRNA editing enzyme, catalytic polyp...
APOBEC1               0.082   apolipoprotein B mRNA editing enzyme 
APOBEC3F              0.055   apolipoprotein B mRNA editing enzyme, catalytic poly...
APOBEC4               0.009   apolipoprotein B 
C13orf18              0.006   hypothetical protein LOC80183 
TMEM129               0.005   transmembrane protein 129 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press