APOBEC3B 15684

Name: APOBEC3B	Sequence: fasta or formatted (382aa)		NCBI GI: 22907025
Description: apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B		Referenced in: Additional Host Defense Functions RNA Editing and Other RNA Modifications
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 23 2 C cysteine 3.9 15 1 D aspartate 5.2 20 1 E glutamate 6.5 25 2 F phenylalanine 7.1 27 1 G glycine 4.7 18 1 H histidine 1.8 7 1 I isoleucine 3.4 13 1 K lysine 2.4 9 1 L leucine 9.9 38 2 M methionine 2.9 11 1 N asparagine 5.0 19 2 P proline 4.5 17 1 Q glutamine 5.2 20 2 R arginine 7.9 30 3 S serine 3.7 14 1 T threonine 4.5 17 1 V valine 4.5 17 1 W tryptophan 3.7 14 1 Y tyrosine 7.3 28 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 apolipoprotein B mRNA editing enzyme, catalytic poly... APOBEC3D 0.520 apolipoprotein B mRNA editing enzyme, catalytic pol... APOBEC3F 0.519 apolipoprotein B mRNA editing enzyme, catalytic poly... APOBEC3G 0.509 apolipoprotein B mRNA editing enzyme, catalytic poly... APOBEC3A 0.414 phorbolin 1 APOBEC3C 0.230 apolipoprotein B mRNA editing enzyme, catalytic poly... AICDA 0.142 activation-induced cytidine deaminase APOBEC3H 0.089 apolipoprotein B mRNA editing enzyme, catalytic poly... APOBEC2 0.086 apolipoprotein B mRNA editing enzyme, catalytic polyp... APOBEC1 0.082 apolipoprotein B mRNA editing enzyme APOBEC3F 0.055 apolipoprotein B mRNA editing enzyme, catalytic poly... APOBEC4 0.009 apolipoprotein B C13orf18 0.006 hypothetical protein LOC80183 TMEM129 0.005 transmembrane protein 129 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.